The complete genomic sequence of the carp fast skeletal myosin heavy chain gene

Gene

Volumn 349, Issue , 2005, Pages 143-151

  Muramatsu Uno, Maiko ^a   Kikuchi, Kiyoshi ^a,b   Suetake, Hiroaki ^a,b   Ikeda, Daisuke ^a   Watabe, Shugo ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Carp; Cyprinus carpio; Exon intron organization; Fast skeletal muscle; Myosin heavy chain gene

Indexed keywords

AMINO ACID; COMPLEMENTARY DNA; FISH PROTEIN; MESSENGER RNA; MYOSIN HEAVY CHAIN; NUCLEOTIDE;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; AMINO ACID SEQUENCE; ANIMAL TISSUE; ARTICLE; CARP; CHICKEN; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; DNA SEQUENCE; EXON; FAST SKELETAL MYOSIN HEAVY CHAIN GENE; FISH GENETICS; GENE; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC CODE; GENETIC SIMILARITY; GENOME ANALYSIS; INTRON; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; PRIORITY JOURNAL; RNA TRANSCRIPTION; RODENT; SPECIES COMPARISON;

EID: 17044436988     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.11.040     Document Type: Article

References (34)

1. R. Breathnach, C. Benoist, K. O'Hara, F. Gannon, and P. Chambon Ovalbumin gene: evidence for leader sequence in mRNA and DNA sequences at the exon-intron boundaries Proc. Natl. Acad. Sci. U. S. A. 75 1978 4853 4857
2. A.R. Brooks, and B. Levy-Wilson Hepatocyte nuclear factor I and C/EBP are essential for the activation of the human apolipoprotein B gene second introns enhancer Mol. Cell. Biol. 12 1992 1134 1148
3. D.F. Colgan, and J.L. Manley Mechanism and regulation of mRNA polyadenylation Genes Dev. 11 1997 2755 2766
4. P.R. Desjardins, J.M. Murkman, J.B. Shrager, L.A. Allmond, and H.H. Stedman Evolutionary implications of three novel members of the human sarcomeric myosin heavy chain gene family Mol. Biol. Evol. 19 2002 375 393
5. G. Elgar, R. Sandford, S. Aparicio, A. Macrae, B. Venkatesh, and S. Brenner Small is beautiful: comparative genomics with the puffer fish (Fugu rubripes) Trends Gen. 12 1996 145 150
6. S. Ennion, L. Gauvry, P. Butterworth, and G. Goldspink Small-diameter white myotomal muscle fibres associated with growth hyperplasia in the carp (Cyprinus carpio) express a distinct myosin heavy chain gene J. Exp. Biol. 198 1995 1603 1611
7. F.E.J. Fry, and J.S. Hart Cruising speed of goldfish in relation to water temperature J. Fish. Res. Bd. Can. 7 1948 169 175
8. L.L. Gauvry, and B.B. Fauconneau Cloning of a trout fast skeletal myosin heavy chain expressed both in embryo and adult muscles neoformed in vitro Comp. Biochem. Physiol. 115B 1996 183 190
9. E.L. George, M.B. Ober, and C.P. Emerson Jr. Functional domains of the Drosophila melanogaster muscle myosin heavy-chain gene are encoded by alternatively spliced exons Mol. Cell. Biol. 9 1989 2957 2974
10. G.F. Gerlach, L. Turay, K.T.A. Malik, J. Lida, A. Scutt, and G. Goldspink Mechanisms of temperature acclimation in the carp: a molecular biology approach Am. J. Physiol. 259 1990 R237 R244
11. H.V. Goodson, H.M. Warrick, and J.A. Spudich Specialized conservation of surface loops of myosin: evidence that loops are involved in determining functional characteristics J. Mol. Biol. 287 1999 173 185
12. X.-F. Guo, M. Nakaya, and S. Watabe Myosin subfragment-1 isoforms having different heavy chain structures from fast skeletal muscle of thermally acclimated carp J. Biochem (Tokyo) 116 1994 728 735
13. W.F. Harrington, and M.E. Rodgers Myosin Ann. Rev. Biochem 53 1984 35 73
14. R. Hinergardner, and D. Rosen Cellular DNA content and evolution of teleostean fishes Amer. Nat. 106 1972 621 644
15. Y. Hirayama, and S. Watabe Structural differences in the crossbridge head of temperature-associated myosin subfragment-1 isoforms from carp fast skeletal muscle Eur. J. Biochem. 246 1997 380 387
16. Y. Hirayama, K. Sutoh, and S. Watabe Structure-function relationships of the two surface loops of myosin heavy chain isoforms from thermally acclimated carp Biochem. Biophys. Res. Commun. 269 2000 237 241
17. D. Ikeda Identification of novel tropomyosin 1 genes of pufferfish (Fugu rubripes) on genomic sequences and tissue distribution of their transcripts Mol. Biol. Rep. 38 2003 83 90
18. D. Ikeda Genomic structural analysis of the pufferfish (Takifugu rubripes) skeletal myosin heavy chain genes Marine Biotechnol. 2004 (in press)
19. J. Imai, Y. Hirayama, K. Kikuchi, M. Kakinuma, and S. Watabe cDNA cloning of myosin heavy chain isoforms from carp fast skeletal muscle and their gene expression associated with temperature acclimation J. Exp. Biol. 200 1997 27 34
20. T. Jaenicke The complete sequence of the human beta-myosin heavy chain gene and a comparative analysis of its product Genomics 8 1990 194 206
21. J. Karn, S. Brenner, and L. Barnett Protein structural domains in the Caenorhabditis elegans unc-54 myosin heavy chain gene are not separated by introns Proc. Natl. Acad. Sci. U. S. A. 80 1983 4253 4257
22. K. Kikuchi, M. Muramatsu, Y. Hirayama, and S. Watabe Characterization of the carp myosin heavy chain multigene family Gene 228 1999 189 196
23. K. McGuigan, P.C. Phillips, and J.H. Postlethwait Evolution of sarcomeric myosin heavy chain genes: evidence from fish Mol. Biol. Evol. 21 2004 1042 1056
24. M.I. Molina, K.E. Kropp, J. Gulick, and J. Robbins The sequence of an embryonic myosin heavy chain gene and isolation of its corresponding cDNA J. Biol. Chem. 262 1987 6478 6488
25. W. Nikovits Jr. Isolation and characterization of an avian slow myosin heavy chain gene expressed during embryonic skeletal muscle fiber formation J. Biol. Chem. 271 1996 17047 17056
26. L. Nyitray, A. Jancso, Y. Ochiai, L. Graf, and A.G. Szent-Gyorgyi Scallop striated and smooth muscle myosin heavy-chain isoforms are produced by alternative RNA splicing from a single gene Proc. Natl. Acad. Sci. U. S. A. 91 1994 12686 12690
27. J.R. Sellers, and H.V. Goodson Myosin Protein Profile 2 1995 1323 1339
28. T. Strachan, and A.P. Read Human molecular genetics 1996 BIOS Scientific Publishers London
29. E.E. Strehler, M.A. Strehler-Page, J.C. Perriard, M. Periasamy, and B. Nadal-Ginard Complete nucleotide and encoded amino acid sequence of a mammalian myosin heavy chain gene. Evidence against intron-dependent evolution of the rod J. Mol. Biol. 190 1986 291 317
30. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
31. T. Toramoto, D. Ikeda, Y. Ochiai, M. Minoshima, N. Shimizu, and S. Watabe Multiple genes organization of pufferfish Fugu rubripes tropomyosin isoforms and tissue distribution of their transcripts Gene 331 2004 41 51
32. S. Watabe Temperature plasticity of contractile proteins in fish muscle J. Exp. Biol. 205 2002 2231 2236
33. S. Watabe Temperature acclimation induces light meromyosin isoforms with different primary structures in carp fast skeletal muscle Biochem. Biophys. Res. Commun. 208 1995 118 125
34. S. Watabe Carp expresses fast skeletal myosin isoforms with altered motor functions and structural stabilities to compensate for changes in environmental temperature J. Therm. Biol. 22 1998 375 390