Sequence divergence of coiled coils-structural rods, myosin filament packing, and the extraordinary conservation of cohesins

Journal of Structural Biology

Volumn 154, Issue 2, 2006, Pages 111-121

  White, Glenn E ^a   Erickson, Harold P ^b  

^a WINGATE UNIVERSITY   (United States)

^b DUKE UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

Cohesin; Coiled coils; Condensin; Desmin; Evolution; Giantin; Kinesin; Lamin; Myosin; NuMA; SMC

Indexed keywords

COHESIN; CONDENSIN; GIANTIN; INTERMEDIATE FILAMENT PROTEIN; LAMIN; MYOSIN; PROTEIN; PROTEIN NDC80P; PROTEIN NUF2P; PROTEIN NUMA; UNCLASSIFIED DRUG;

ALPHA HELIX; ARTICLE; GENETIC CONSERVATION; HUMAN VERSUS ANIMAL COMPARISON; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN STRUCTURE; RODENT; SEQUENCE ANALYSIS; SISTER CHROMATID; SKELETAL MUSCLE; STRUCTURE ANALYSIS; SURFACE PROPERTY; UNINDEXED SEQUENCE;

ACTINS; AMINO ACID SEQUENCE; ANIMALS; ANTIGENS, NUCLEAR; CELL CYCLE PROTEINS; CHROMOSOMAL PROTEINS, NON-HISTONE; CONSERVED SEQUENCE; EVOLUTION, MOLECULAR; HUMANS; MEMBRANE PROTEINS; MODELS, MOLECULAR; MYOSINS; NUCLEAR MATRIX-ASSOCIATED PROTEINS; NUCLEAR PROTEINS; PROTEIN CONFORMATION; PROTEIN SUBUNITS; STRUCTURE-ACTIVITY RELATIONSHIP; VARIATION (GENETICS);

ANIMALIA; MAMMALIA; RODENTIA;

EID: 33646033471     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2006.01.001     Document Type: Article

References (48)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25 (1997) 3389-3402
2. Anderson D.E., Losada A., Erickson H.P., and Hirano T. Condensin and cohesin display different arm conformations with characteristic hinge angles. J. Cell Biol. 156 (2002) 419-424
3. Au Y. The muscle ultrastructure: a structural perspective of the sarcomere. Cell Mol. Life Sci. 61 (2004) 3016-3033
4. Bar H., Strelkov S.V., Sjoberg G., Aebi U., and Herrmann H. The biology of desmin filaments: how do mutations affect their structure, assembly, and organisation?. J. Struct. Biol. 148 (2004) 137-152
5. Barr F.A., and Short B. Golgins in the structure and dynamics of the Golgi apparatus. Curr. Opin. Cell. Biol. 15 (2003) 405-413
6. Ben Yaou R., Muchir A., Arimura T., Massart C., Demay L., Richard P., and Bonne G. Genetics of laminopathies. Novartis Found Symp. 264 (2005) 81-90 discussion 90-97, 227-230.
7. Chakravarthy S., Park Y.J., Chodaparambil J., Edayathumangalam R.S., and Luger K. Structure and dynamic properties of nucleosome core particles. FEBS Lett. 579 (2005) 895-898
8. Chothia C., and Janin J. Principles of protein-protein recognition. Nature 256 (1975) 705-708
9. Cobbe N., and Heck M.M. The evolution of SMC proteins: phylogenetic analysis and structural implications. Mol. Biol. Evol. 21 (2004) 332-347
10. Coy D.L., Hancock W.O., Wagenbach M., and Howard J. Kinesin's tail domain is an inhibitory regulator of the motor domain. Nat. Cell Biol. 1 (1999) 288-292
11. Fant X., Merdes A., and Haren L. Cell and molecular biology of spindle poles and NuMA. Int. Rev. Cytol. 238 (2004) 1-57
12. Ferguson S.S. Evolving concepts in G protein-coupled receptor endocytosis: the role in receptor desensitization and signaling. Pharmacol. Rev. 53 (2001) 1-24
13. Friedman D.S., and Vale R.D. Single-molecule analysis of kinesin motility reveals regulation by the cargo-binding tail domain. Nat. Cell Biol. 1 (1999) 293-297
14. Gerton J. Chromosome cohesion: a cycle of holding together and falling apart. PLoS Biol. 3 (2005) e94
15. Gillingham A.K., and Munro S. Long coiled-coil proteins and membrane traffic. Biochim. Biophys. Acta. 1641 (2003) 71-85
16. Glynn E.F., Megee P.C., Yu H.G., Mistrot C., Unal E., Koshland D.E., DeRisi J.L., and Gerton J.L. Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. PLoS Biol. 2 (2004) E259
17. Gruber M., and Lupas A.N. Historical review: another 50th anniversary-new periodicities in coiled coils. Trends Biochem. Sci. 28 (2003) 679-685
18. Gruber S., Haering C.H., and Nasmyth K. Chromosomal cohesin forms a ring. Cell 112 (2003) 765-777
19. Haering C.H., Lowe J., Hochwagen A., and Nasmyth K. Molecular architecture of SMC proteins and the yeast cohesin complex. Mol. Cell 9 (2002) 773-788
20. Haering C.H., and Nasmyth K. Building and breaking bridges between sister chromatids. Bioessays 25 (2003) 1178-1191
21. Herrmann H., and Aebi U. Intermediate filaments: molecular structure, assembly mechanism, and integration into functionally distinct intracellular Scaffolds. Annu. Rev. Biochem. 73 (2004) 749-789
22. Hirano T. The ABCs of SMC proteins: two-armed ATPases for chromosome condensation, cohesion, and repair. Genes Dev. 16 (2002) 399-414
23. Hirano T. SMC proteins and chromosome mechanics: from bacteria to humans. Philos. Trans. R Soc. Lond. B Biol. Sci. 360 (2005) 507-514
24. Jessberger R. The many functions of smc proteins in chromosome dynamics. Nat. Rev. Mol. Cell Biol. 3 (2002) 767-778
25. Khan A.U., and Krishnamurthy S. Histone modifications as key regulators of transcription. Front Biosci. 10 (2005) 866-872
26. Korn E.D. Coevolution of head, neck, and tail domains of myosin heavy chains. Proc. Natl. Acad. Sci. USA 97 (2000) 12559-12564
27. Langford G.M. Myosin-V, a versatile motor for short-range vesicle transport. Traffic 3 (2002) 859-865
28. Lengronne A., Katou Y., Mori S., Yokobayashi S., Kelly G.P., Itoh T., Watanabe Y., Shirahige K., and Uhlmann F. Cohesin relocation from sites of chromosomal loading to places of convergent transcription. Nature 430 (2004) 573-578
29. Lupas A. Coiled coils: new structures and new functions. TIBS 21 (1998) 375-382
30. Lupas A., Van Dyke M., and Stock J. Predicting coiled coils from protein sequences. Science 252 (1991) 1162-1164
31. Lupas A.N., and Gruber M. The structure of α-helical coiled coils. Adv. Protein Chem. 70 (2005) 37-78
32. Makalowski W., and Boguski M.S. Evolutionary parameters of the transcribed mammalian genome: an analysis of 2820 orthologous rodent and human sequences. Proc. Natl. Acad. Sci. USA 95 (1998) 9407-9412
33. Melby T.E., Ciampaglio C.N., Briscoe G., and Erickson H.P. The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge. J. Cell Biol. 142 (1998) 1595-1604
34. Millman B.M. The filament lattice of striated muscle. Physiol. Rev. 78 (1998) 359-391
35. Nasmyth K. How might cohesin hold sister chromatids together?. Philos Trans. R Soc. Lond. B Biol. Sci. 360 (2005) 483-496
36. Paulin D., and Li Z. Desmin: a major intermediate filament protein essential for the structural integrity and function of muscle. Exp. Cell Res. 301 (2004) 1-7
37. Rose A., and Meier I. Scaffolds, levers, rods and springs: diverse cellular functions of long coiled-coil proteins. Cell Mol. Life Sci. 61 (2004) 1996-2009
38. Santama N., Er C.P., Ong L.L., and Yu H. Distribution and functions of kinectin isoforms. J. Cell Sci. 117 (2004) 4537-4549
39. Scholey J.M., Taylor K.A., and Kendrick-Jones J. Regulation of non-muscle myosin assembly by calmodulin-dependent light chain kinase. Nature 287 (1980) 233-235
40. Sergeant J., Taylor E., Palecek J., Fousteri M., Andrews E.A., Sweeney S., Shinagawa H., Watts F.Z., and Lehmann A.R. Composition and architecture of the Schizosaccharomyces pombe Rad18 (Smc5-6) complex. Mol. Cell. Biol. 25 (2005) 172-184
41. Squire J.M., and Morris E.P. A new look at thin filament regulation in vertebrate skeletal muscle. FASEB J. 12 (1998) 761-771
42. Stock M.F., Guerrero J., Cobb B., Eggers C.T., Huang T.G., Li X., and Hackney D.D. Formation of the compact confomer of kinesin requires a COOH-terminal heavy chain domain and inhibits microtubule-stimulated ATPase activity. J. Biol. Chem. 274 (1999) 14617-14623
43. Stuurman N., Heins S., and Aebi U. Nuclear lamins: their structure, assembly, and interactions. J. Struct. Biol. 122 (1998) 42-66
44. Suzuki H., Onishi H., Takahashi K., and Watanabe S. Structure and function of chicken gizzard myosin. J. Biochem. (Tokyo) 84 (1978) 1529-1542
45. Toyoshima I., Yu H., Steuer E.R., and Sheetz M.P. Kinectin, a major kinesin-binding protein on ER. J. Cell Biol. 118 (1992) 1121-1131
46. Tyska M.J., and Mooseker M.S. Myosin-V motility: these levers were made for walking. Trends Cell Biol. 13 (2003) 447-451
47. Wei R.R., Sorger P.K., and Harrison S.C. Molecular organization of the Ndc80 complex, an essential kinetochore component. Proc. Natl. Acad. Sci. USA 102 (2005) 5363-5367
48. Xu J.Q., Harder B.A., Uman P., and Craig R. Myosin filament structure in vertebrate smooth muscle. J. Cell Biol. 134 (1996) 53-66