메뉴 건너뛰기




Volumn 157, Issue 4, 2006, Pages 367-375

Phylogenetic analysis of members of the metabolically diverse genus Gordonia based on proteins encoding the gyrB gene

Author keywords

16S rRNA gene; Gordonia; gyrB gene; Phylogeny

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) B;

EID: 33646024642     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2005.09.007     Document Type: Article
Times cited : (41)

References (22)
  • 2
    • 16844382131 scopus 로고    scopus 로고
    • Reclassification of Gordonia nitida Yoon et al. 2000 as a latter synonym of Gordonia alkanivorans Kummer et al. 1999
    • Arenskötter M., Linos A., Schumann P., Kroppenstedt R.M., and Steinbüchel A. Reclassification of Gordonia nitida Yoon et al. 2000 as a latter synonym of Gordonia alkanivorans Kummer et al. 1999. Int. J. Syst. Evol. Microbiol. 55 (2005) 695-697
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 695-697
    • Arenskötter, M.1    Linos, A.2    Schumann, P.3    Kroppenstedt, R.M.4    Steinbüchel, A.5
  • 3
    • 0037133365 scopus 로고    scopus 로고
    • Use of the gyrB gene for the identification of Pandoraea species
    • Coenye T., and Lipuma J.J. Use of the gyrB gene for the identification of Pandoraea species. FEMS Microbiol. Lett. 208 (2002) 15-19
    • (2002) FEMS Microbiol. Lett. , vol.208 , pp. 15-19
    • Coenye, T.1    Lipuma, J.J.2
  • 4
    • 0033986599 scopus 로고    scopus 로고
    • Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences
    • Kasai H., Ezaki T., and Harayama S. Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences. J. Clin. Microbiol. 38 (2000) 301-308
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 301-308
    • Kasai, H.1    Ezaki, T.2    Harayama, S.3
  • 5
    • 0033971219 scopus 로고    scopus 로고
    • Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness
    • Kasai H., Tamura T., and Harayama S. Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness. Int. J. Syst. Evol. Microbiol. 50 (2000) 127-134
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 127-134
    • Kasai, H.1    Tamura, T.2    Harayama, S.3
  • 6
    • 0028126828 scopus 로고
    • Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordonia as Gordona aichiensis comb. nov. and Gordona amarae comb. nov
    • Klatte S., Rainey F.A., and Kroppenstedt M. Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordonia as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. Int. J. Syst. Bacteriol. 44 (1994) 769-773
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 769-773
    • Klatte, S.1    Rainey, F.A.2    Kroppenstedt, M.3
  • 7
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics software
    • Kumar S., Tamura K., Jackobsen I.B., and Nei M. MEGA2: Molecular evolutionary genetics software. Bioinformatics 17 (2001) 1244-1245
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jackobsen, I.B.3    Nei, M.4
  • 8
    • 0033951388 scopus 로고    scopus 로고
    • Mycolic acids from Rhodococcus, Gordonia, and Dietzia
    • Nishiuchi Y., Baba T., and Yano I. Mycolic acids from Rhodococcus, Gordonia, and Dietzia. J. Microbiol. Methods 40 (2000) 1-9
    • (2000) J. Microbiol. Methods , vol.40 , pp. 1-9
    • Nishiuchi, Y.1    Baba, T.2    Yano, I.3
  • 10
    • 9644268091 scopus 로고    scopus 로고
    • Development of PCR primers specific for the amplification and direct sequencing of gyrB genes from microbacteria, order Actinomycetales
    • Richert K., Brambilla E., and Stackbrandt E. Development of PCR primers specific for the amplification and direct sequencing of gyrB genes from microbacteria, order Actinomycetales. J. Microbiol. Methods 60 (2005) 115-123
    • (2005) J. Microbiol. Methods , vol.60 , pp. 115-123
    • Richert, K.1    Brambilla, E.2    Stackbrandt, E.3
  • 11
    • 0028838551 scopus 로고
    • Phylogeny of the Genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences
    • Ruimy R., Riegel P., Boiron P., Monteil H., and Christen R. Phylogeny of the Genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences. Int. J. Syst. Bacteriol. 45 (1995) 740-746
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 740-746
    • Ruimy, R.1    Riegel, P.2    Boiron, P.3    Monteil, H.4    Christen, R.5
  • 12
    • 23944505243 scopus 로고    scopus 로고
    • Rapid detection and identification of the metabolically diverse genus Gordonia by 16S rRNA-gene-targeted genus-specific primers
    • Shen F.T., and Young C.C. Rapid detection and identification of the metabolically diverse genus Gordonia by 16S rRNA-gene-targeted genus-specific primers. FEMS Microbiol. Lett. 250 (2005) 221-227
    • (2005) FEMS Microbiol. Lett. , vol.250 , pp. 221-227
    • Shen, F.T.1    Young, C.C.2
  • 13
    • 0001450337 scopus 로고
    • Evidence of phylogenetic heterogeneity within the genus Rhodococcus: Revival of the genus Gordona (Tsukamura)
    • Stackebrandt E., Smida J., and Collins M.D. Evidence of phylogenetic heterogeneity within the genus Rhodococcus: Revival of the genus Gordona (Tsukamura). J. Gen. Appl. Microbiol. 34 (1988) 341-348
    • (1988) J. Gen. Appl. Microbiol. , vol.34 , pp. 341-348
    • Stackebrandt, E.1    Smida, J.2    Collins, M.D.3
  • 14
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 15
    • 0035221043 scopus 로고    scopus 로고
    • Automated fluorescent DNA sequencing on the ABI PRISM 310 Genetic Analyzer
    • Watts D., and MacBeath J.R. Automated fluorescent DNA sequencing on the ABI PRISM 310 Genetic Analyzer. Methods Mol. Biol. 167 (2001) 153-170
    • (2001) Methods Mol. Biol. , vol.167 , pp. 153-170
    • Watts, D.1    MacBeath, J.R.2
  • 16
    • 0028948030 scopus 로고
    • PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains
    • Yamamoto S., and Harayama S. PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains. Appl. Environ. Microbiol. 61 (1995) 1104-1109
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1104-1109
    • Yamamoto, S.1    Harayama, S.2
  • 17
    • 0029863154 scopus 로고    scopus 로고
    • Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products
    • Yamamoto S., and Harayama S. Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products. Int. J. Syst. Bacteriol. 46 (1996) 506-511
    • (1996) Int. J. Syst. Bacteriol. , vol.46 , pp. 506-511
    • Yamamoto, S.1    Harayama, S.2
  • 18
    • 0031827993 scopus 로고    scopus 로고
    • Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes
    • Yamamoto S., and Harayama S. Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes. Int. J. Syst. Bacteriol. 48 (1998) 813-819
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 813-819
    • Yamamoto, S.1    Harayama, S.2
  • 19
    • 0032931780 scopus 로고    scopus 로고
    • Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: Comparison with the grouping by DNA-DNA hybridization
    • Yamamoto S., Bouvet P.J.M., and Harayama S. Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: Comparison with the grouping by DNA-DNA hybridization. Int. J. Syst. Bacteriol. 49 (1999) 87-95
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 87-95
    • Yamamoto, S.1    Bouvet, P.J.M.2    Harayama, S.3
  • 20
    • 0033764790 scopus 로고    scopus 로고
    • Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes
    • Yamamoto S., Kasai H., Arnold D.L., Jackson R.W., Vivian A., and Harayama S. Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146 (2000) 2385-2394
    • (2000) Microbiology , vol.146 , pp. 2385-2394
    • Yamamoto, S.1    Kasai, H.2    Arnold, D.L.3    Jackson, R.W.4    Vivian, A.5    Harayama, S.6
  • 21
    • 13244281763 scopus 로고    scopus 로고
    • Chryseobacterium formosense sp. nov. isolated from the rhizosphere of Latuca sativa L. (Garden lettuce)
    • Young C.C., Kämpfer P., Shen F.T., Lai W.A., and Arun A.B. Chryseobacterium formosense sp. nov. isolated from the rhizosphere of Latuca sativa L. (Garden lettuce). Int. J. Syst. Evol. Microbiol. 55 (2005) 432-436
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 432-436
    • Young, C.C.1    Kämpfer, P.2    Shen, F.T.3    Lai, W.A.4    Arun, A.B.5
  • 22
    • 33646029506 scopus 로고    scopus 로고
    • C.C. Young, T.C. Lin, M.S. Yeh, F.T. Shen, J.S. Chang, Identification and kinetic characteristics of an indigenous diesel-degrading Gordonia alkanivorans strain, World J. Microbiol. Biotechnol., in press


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.