Inverse sequence-tagged repeat (ISTR) analysis of genetic variability in forest coffee (Coffea arabica L.) from Ethiopia

Genetic Resources and Crop Evolution

Volumn 53, Issue 4, 2006, Pages 721-728

  Aga, Esayas ^a,b   Bryngelsson, Tomas ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b ADDIS ABABA UNIVERSITY   (Ethiopia)

Author keywords

Coffea arabica; Conservation; Ethiopia; Forest coffee; Genetic diversity; ISTR

Indexed keywords

BIODIVERSITY; BIOMARKER; COFFEE; GENETIC VARIATION; SEEDLING; TAGGING;

AFRICA; EAST AFRICA; ETHIOPIA; SUB-SAHARAN AFRICA;

COFFEA ARABICA;

EID: 33645976828     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-004-5729-5     Document Type: Article

References (31)

1. E. Aga T. Bryngelsson E. Bekele B. Salomon 2003 Genetic diversity of forest arabica coffee (Coffea arabica L.) in Ethiopia as revealed by random amplified polymorphic DNA (RAPD) analysis Hereditas 138 36 46
2. Ameha M. 1991. Significance of Ethiopian coffee genetic re-sources to coffee improvement. In: Engels J.M.M., Hawkes J.G. and Worede M. (eds), Plant Genetic Resources of Ethiopia. Cambridge University Press, pp. 354-359.
3. B.J. Bassam G. Caetano-Anollés P.M. Gresshoff 1991 Fast and sensitive silver staining of DNA in polyacrylamide gels Anal. Biochem. 196 80 83
4. Berthaud J. and Charrier A. 1988. Genetic resources of Coffea. In: Clark R.J. and Macrae R. (eds), Coffee Vol. 4: Agronomy. Elsevier Applied Science, pp. 1-42.
5. D.M. Bridson B. Vercourt 1988 Rubiaceae (Part 2) R.M. Polhill Flora of Tropical East Africa Balkema Rotterdom/Brookfield 703 723
6. J.M. Brownbridge E. Gebre-Egziabher 1968 The quality of some of the main Ethiopian mild coffees Turrialba 18 361 372
7. A. Charrier J. Berthaud 1985 Botanical classification of coffee M.N. Clifford K.C. Willson CoffeeBotany, Biochemistry and Production of Beans and Beverage Croom Helm London and Sydney 13 47
8. A.J. Flavell M.R. Knox S.R. Pearce T.H.N. Ellis 1998 Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis Plant J. 16 643 650
9. J.R. Harlan 1969 Ethiopia: a center of diversity Econ. Bot. 23 309 314
10. P.W. Hedrick 1998 Maintenance of genetic polymorphism: spatial selection and self-fertilization Am. Nat. 152 145 150
11. J.S. Heywood 1991 Spatial analysis of genetic variation in plant populations Annu. Rev. Ecol. Syst. 22 334 355
12. R.L. Hunter C.L. Markert 1957 Histochemical demonstration of enzymes separated by zone electrophoresis in starch gels Science 125 1294 1295
13. P. Jaccard 1908 Novelles recherches sur la distribution florale Bull. Soc. Vaud. Sci. Nat. 44 223 270
14. R. Kalendar T. Grob M. Regina A. Suoniemi A. Schulman 1999 IRAP & REMAP: two new retrotransposon-based DNA fingerprinting techniques Theor. Appl. Genet. 98 704 711
15. Karp A., Kresovich S., Bhat K.V., Ayad W.G. and Hodgkin T. 1997. Molecular tools in plant genetic conservation: a guide to the techniques. International Plant Genetic Resources Institute Technical Bulletin No. 2, pp. 5-47.
16. M. Kimura J.F. Crow 1964 The number of alleles that can be maintained in a finite population Genetics 49 725 738
17. P. Lashermes P. Trouslot F. Anthony M.C. Comes A. Charrier 1996 Genetic diversity for RAPD markers between cultivated and wild accessions of Coffea arabica Euphytica 87 59 64
18. C.R. Layton F.R. Ganders 1984 The genetic consequences of contrasting breeding systems in Plectritis (Valerianaceae) Evolution 38 1308 1325
19. E.M. [tmp] McCarthy J. Liu G. Lizhi J.F. [tmp] McDonald 2002 Long terminal repeat of Oryza sativa Genome Biol. 3 10 0053.1 0053.11
20. G.F. Meyer 1965 Notes on forest Coffea arabica from Southwestern Ethiopiawith some historical considerations Econ. Bot. 19 136 151
21. M. Nei 1987 Molecular Evolutionary Genetics Colombia University Press New York
22. A.M. Odasz O. Savolainen 1996 Genetic variation in populations of the arctic perennial Pedicularis dasyantha (Scrophulariaceae), on SvalbardNorway Am. J. Bot. 83 1379 1385
23. W. Rohde A. Kullaya J. Rodriguez E. Ritter 1995 Genome analysis of Cocos nucifera L. by PCR amplification of spacer sequences separating a subset of copia-like EcoRI repetitive elements J. Genet. Breed. 49 179 186
24. W. Rohde 1996 Inverse sequence-tagged repeat (ISTR) analysis, a novel and universal PCR-based technique for genome analysis in the plant and animal kingdom J. Genet. Breed. 50 249 261
25. F.J. Rohlf 2000 NTSYS-pc, Numerical Taxonomy and Multivariate Analysis Systemversion 2.1 Exeter Software New York
26. Sneath P.H.A. and Sokal R.R. 1973. Principles and Practice of Numerical Taxonomy. W H Freeman.
27. V.D. Soleimani B.R. Baum D.A. Johnson 2002 AFLP and pedigree-based genetic diversity estimates in modern cultivars of durum wheat [Triticum L. subsp. durum (Desf.) Husn.] Theor. Appl. Genet. 104 350 357
28. P.G. Sylvain 1958 Ethiopian coffee: Its significance to world coffe problems Econ. Bot. 12 111 130
29. R.I. Tayyar J.G. WAINES 1996 Genetic relationships among annual species of Cicer (Fabaceae) using isozyme variation Theor. Appl. Genet. 92 245 254
30. N.A. Van der Graaff 1981 Selection of Arabica coffee types resistant to coffee berry disease in Ethiopia Agricultural University of Wageningen Wageningen Ph.D. thesis
31. M. Wang B.J. Oppedijk X. Lu B.V. Duijn R.A. Schilperoort 1996 Apoptosis in barley aleurone during germination and its inhibition by abscisic acid Plant Mol. Biol. 32 1125 1134