Inverse sequence-tagged repeat (ISTR) analysis, a novel and universal PCR-based technique for genome analysis in the plant and animal kingdom

Journal of Genetics and Breeding

Volumn 50, Issue 3, 1996, Pages 249-261

  Rohde, W ^a  

^a MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

Author keywords

Biodiversity; DNA fingerprinting; Molecular markers; Polymorphisms

Indexed keywords

EID: 0030378032     PISSN: 03949257     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (24)

1. ASHLEY, C.T. and WARREN, S.T. 1995. Trinucleotide repeat expansion and human disease. Ann. Rev. Genetics, 29: 703-728.
2. BONIERBALE, M.W., PLAISTED, R.L. and TANKSLEY, S.D., 1988. RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics, 120: 1095-1103.
3. BURR, B., 1994. Some concepts and new methods for molecular mapping in plants. In: PHILLIPS, R.L. and VASIL, I.K., eds., DNA-based Markers in Plants. Kluwer Academic Publishers, Dordrecht, pp. 1-7.
4. DOYLE, J.J. and DOYLE, J.L, 1990. Isolation of plant DNA from fresh tissue. Focus, 12: 13-15.
5. DUTRILLAUX, B., 1995. Pathways of chromosome alteration in human epithelial cancers. Adv. Cancer Res., 67: 59-82.
6. ENGELS, J.M.M., ed., 1995. In Situ Conservation and Sustainable Use of Plant Genetic Resources for Food and Agriculture in Developing Countries. IPGRI/DSE, Rome and Feldafing.
7. FINNEGAN, D.J., 1985. Transposable elements in eukaryotes. Int. Rev. Cytology, 93: 281-326.
8. FLAVELL, A.J., DUNBAR, E., ANDERSON, R., PEARCE, S.R., HARTLEY, R. and KUMAR, A., 1992. Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res., 20: 3639-3644.
9. HAYWARD, M.D., BOSEMARK, N.O. and ROMAGOSA, I., eds., 1993. Plant Breeding. Principles and Prospects. Chapman & Hall, London.
10. HIROCHIKA, H. and HIROCHIKA, R., 1993. Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn. J. Genet., 68: 35-46.
11. KUMAR, A., 1994. Somaclonal variation. In: BRADSHAW, J.E. and MACKAY, G.R., eds., Potato Genetics. CAB Wallingford, pp. 197-212.
12. MANNINEN, I. and SCHULMAN, A.H., 1993. BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol. Biol., 22: 829-846.
13. METCALF, D., 1994. Hemopoietic regulators and leukemia development: a personal retrospective. Adv. Cancer. Res., 63: 41-91.
14. MOORE, G., 1995. Cereal genome evolution: pastoral pursuits with «Lego» genomes. Curr. Opin. Genet. Devel., 5: 717-724.
15. PESCHKE, V.M. and PHILLIPS, R.L., 1992. Genetic implication of somaclonal variation in plants. Adv. Genetics, 30: 41-75.
16. PHILLIPS, R.L. and VASIL, I.K., eds., 1994. DNA-based Markers in Plants. Kluwer Academic Publishers, Dordrecht.
17. POWELL, W., BONAR, N., BAIRD, E., RUSSELL, J. and WAUGH, R., 1994. Molecular marker techniques for barley genome analysis and breeding. SCRI Ann. Rep., pp. 57-58.
18. RAFALSKI, J.A. and TINGEY, S.V., 1993. Genetic diagnostics in plant breeding: RAPDs, microsatellites and machines. Trends Genet., 9: 275-280.
19. ROHDE, W., SALAMINI, F., ASHBURNER, R. and RANDLES, J.W., 1992. An EcoRI repetitive sequence family of the coconut palm Cocos nucifera L. shows sequence homology to copia-like elements. J. Genet. & Breed., 46: 391-394.
20. ROHDE, W., KULLAYA, A., RODRIGUEZ, J. and RITTER, E., 1995. Genetic analysis of Cocos nucifera L. by PCR amplification of spacer sequences separating a subset of copia-like EcoRI repetitive elements. J. Genet. & Breed., 49: 179-186.
21. SENSI, E., VIGNANI, R., ROHDE, W. and BIRICOLTI, S., 1996. Characterization of genetic biodiversity with Vitis vinifera L. «Sangiovese» and «Colorino» genotypes by AFLP and ISTR DNA marker technology. Vitis, 35: 183-188.
22. VOS, P., HOGERS, R., BLEEKER, M., REIJANS, M., VAND DE LEE, T., HORNERS, M., FRIJTERS, A., POT, J., PELEMAN, J., KUIPER, M. and ZABEAL, M., 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res., 23: 4407-4414.
23. VOYTAS, D.F., CUMMINGS, M.P., KONIECZNY, A., AUSUBEL, F.M. and RODERMEL, S.R., 1992. copia-like retrotransposons are ubiquitous among plants. Proc. Natl. Acad. Sci. USA, 89: 7124-7128.
24. WESSLER, S.R., BUREAU, T.E. and WHITE, S.E., 1995. LTR-retrotransposons and mites: important players in the evolution of plant genomes. Curr. Opin. Genet. Devel., 5: 814-821.