Conserving a volatile metabolite: A role for carboxysome-like organelles in Salmonella enterica

Journal of Bacteriology

Volumn 188, Issue 8, 2006, Pages 2865-2874

  Penrod, Joseph T ^a   Roth, John R ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETAL; ACETALDEHYDE; ALCOHOL; BACTERIAL ENZYME; CARBON; CARBON DIOXIDE; ETHANOLAMINE; EUTG ENZYME; GENE PRODUCT; NITROGEN; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE; UNCLASSIFIED DRUG; VOLATILE AGENT;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; CARBON SOURCE; CARBOXYSOME LIKE ORGANELLE; CELL ORGANELLE; CONTROLLED STUDY; EUT OPERON; EUTG GENE; EUTK GENE; EUTL GENE; EUTM GENE; EUTN GENE; GENE; METABOLITE; NONHUMAN; OPERON; PH; PRIORITY JOURNAL; RECYCLING; SALMONELLA ENTERICA;

ACETALDEHYDE; BACTERIAL PROTEINS; ETHANOL; ETHANOLAMINE; GENE DELETION; MODELS, BIOLOGICAL; ORGANELLES; SALMONELLA TYPHIMURIUM;

BACTERIA (MICROORGANISMS); SALMONELLA ENTERICA;

EID: 33645964606     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.188.8.2865-2874.2006     Document Type: Article

References (43)

1. 2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution. J. Exp. Bot. 54:609-622.
2. Berkowitz, D., J. M. Hushon, H. J. Whitfield, Jr., J. R. Roth, and B. N. Ames. 1968. Procedure for identifying nonsense mutations. J. Bacteriol. 96:215-220.
3. Bobik, T., Y. Xu, R. Jeter, K. Otto, and J. R. Roth. 1997. Propanediol utilization genes (pdu) of Salmonella typhimurium: three genes for the propanediol dehydratase. J. Bacteriol. 179:6633-6639.
4. 12-dependent 1,2-propanediol degradation. J. Bacteriol. 181:5967-5975.
5. Bradbeer, C. 1965. The clostridial fermentations of choline and ethanolamine. I. Preparation and properties of cell-free extracts. J. Biol. Chem. 240:4669-4674.
6. Bradbeer, C. 1965. The clostridial fermentations of choline and ethanolamine. II. Requirement for a cobamide coenzyme by an ethanolamine deaminase. J. Biol. Chem. 240:4675-4681.
7. Brinsmade, S. R., and J. C. Escalante-Semerena. 2004. The eutD gene of Salmonella enterica encodes a protein with phosphotransacetylase enzyme activity. J. Bacteriol. 186:1890-1892.
8. Brinsmade, S. R., T. Paldon, and J. C. Escalante-Semerena. 2005. Minimal functions and physiological conditions required for growth of Salmonella enterica on ethanolamine in the absence of the metabolosome. J. Bacteriol. 187:8039-8046.
9. Buan, N. R., S. J. Suh, and J. C. Escalante-Semerena. 2004. The eutT gene of Salmonella enterica encodes an oxygen-labile, metal-containing ATP:corrinoid adenosyltransferase enzyme. J. Bacteriol. 186:5708-5714.
10. Cannon, G. C., C. E. Bradburne, H. C. Aldrich, S. H. Baker, S. Heinhorst, and J. M. Shively. 2001. Microcompartments in prokaryotes: carboxysomes and related polyhedra. Appl. Environ. Microbiol. 67:5351-5361.
11. Court, D. L., J. A. Sawitzke, and L. C. Thomason. 2002. Genetic engineering using homologous recombination. Annu. Rev. Genet. 36:361-388.
12. Czymmek, K., J. Penrod, E. Kofoid, and J. R. Roth. Unpublished data.
13. Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. USA 97:6640-6645.
14. Davis, R. W., D. Botstein, and J. R. Roth. 1980. Advanced bacterial genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
15. 12-dependent degradation of 1,2-propanediol in Salmonella enterica serovar Typhimurium LT2. J. Bacteriol. 185:5086-5095.
16. 12-dependent degradation of 1,2-propanediol in Salmonella enterica serovar typhimurium LT2. J. Bacteriol. 184:1253-1261.
17. 12) de novo under anaerobic growth conditions. J. Bacteriol. 159:206-216.
18. Johnson, C. L. V. J., E. Pechonick, S. D. Park, G. D. Havemann, N. A. Leal, and T. A. Bobik. 2001. Functional genomic, biochemical, and genetic characterization of the Salmonella pduO gene, an ATP:cob(I)alamin adenosyltransferase gene. J. Bacteriol. 183:1577-1584.
19. 2 Concentrating mechanisms in photosynthetic microorganisms. Annu. Rev. Plant Physiol. Plant Mol. Biol. 50:539-570.
20. Kofoid, E., C. Rappleye, I. Stojiljkovic, and J. Roth. 1999. The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins. J. Bacteriol. 181:5317-5329.
21. Mori, K., T. Tobimatsu, T. Hara, and T. Toraya. 1997. Characterization, sequencing, and expression of the genes encoding a reactivating factor for glycerol-inactivated adenosylcobalamin-dependent diol dehydratase. J. Biol. Chem. 272:32034-32041.
22. Penrod, J., T. Fazzio, C. Mace, E. C. Kofoid, and J. R. Roth. Unpublished data.
23. Penrod, J. T., C. C. Mace, and J. R. Roth. 2004. A pH-sensitive function and phenotype: evidence that EutH facilitates diffusion of uncharged ethanolamine in Salmonella enterica. J. Bacteriol. 186:6885-6890.
24. Price-Carter, M., T. G. Fazzio, E. I. Vallbona, and J. R. Roth. 2005. Polyphosphate kinase protects Salmonella enterica from weak organic acid stress. J. Bacteriol. 187:3088-3099.
25. 12-dependent anaerobic growth of Salmonella enterica sevrovar Typhimurium on ethanolamine or 1,2-propanediol. J. Bacteriol. 183:2463-2475.
26. Rondon, M. R., A. R. Horswill, and J. C. Escalante-Semerena. 1995. DNA polymerase I function is required for the utilization of ethanolamine, 1,2-propanediol, and propionate by Salmonella typhimurium LT2. J. Bacteriol. 177:7119-7124.
27. Rondon, M. R., R. Kazmierczak, and J. C. Escalante-Semerena. 1995. Glutathione is required for maximal transcription of the cobalamin biosynthetic and 1,2-propanediol utilization (cob/pdu) regulon and for the catabolism of ethanolamine, 1,2-propanediol, and propionate in Salmonella typhimurium LT2. J. Bacteriol. 177:5434-5439.
28. Roof, D. M., and J. R. Roth. 1992. Autogenous regulation of ethanolamine utilization by a transcriptional activator of the eut operon in Salmonella typhimunum. J. Bacteriol. 174:6634-6643.
29. Roof, D. M., and J. R. Roth. 1988. Ethanolamine utilization in Salmonella typhimurium. J. Bacteriol. 170:3855-3863.
30. 12-dependent ethanolamine utilization in Salmonella typhimurium. J. Bacteriol. 171:3316-3323.
31. 12): synthesis and biological significance. Annu. Rev. Microbiol. 50:137-181.
32. Salmond, C. V., R. G. Kroll, and I. R. Booth. 1984. The effect of food preservatives on pH homeostasis in Escherichia coli. J. Gen. Microbiol. 130:2845-2850.
33. Sampson, E. M., C. L. Johnson, and T. A. Bobik. 2005. Biochemical evidence that the pduS gene encodes a bifunctional cobalamin reductase. Microbiology 151:1169-1177.
34. 12-dependent ethanolamine ammonia-lyase in Escherichia coli and Klebsiella aerogenes. J. Gen. Microbiol. 95:173-176.
35. Schmieger, H. 1971. A method of detection of phage mutants with altered transducing ability. Mol. Gen. Genet. 110:378-381.
36. 12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica. J. Bacteriol. 186:7635-7644.
37. Sheppard, D. E., and J. R. Roth. 1994. A rationale for autoinduction of a transcriptional activator: ethanolamine ammonia-lyase (EutBC) and the operon activator (EutR) compete for adenosyl-cobalamin in Salmonella typhimurium. J. Bacteriol. 176:1287-1296.
38. Shively, J., and R. English. 1991. The carboxysome, a prokaryotic organelle: a mini review. Can. J. Bot. 69:957-963.
39. Soda, K. 1967. A spectrophotometric microdetermination of keto acids with 3-methyl-2-benzothiazolone hydrazone. Agric. Biol. Chem. 31:1054-1060.
40. Starai, V. J., J. Garrity, and J. C. Escalante-Semerena. 2005. Acetate excretion during growth of Salmonella enterica on ethanolamine requires phosphotransacetylase (EutD) activity, and acetate recapture requires acetyl-CoA synthetase (Acs) and phosphotransacetylase (Pta) activities. Microbiology 151:3793-3801.
41. Stojiljkovic, I., A. J. Baumler, and F. Heffron. 1995. Ethanolamine utilization in Salmonella typhimurium: nucleotide sequence, protein expression, and mutational analysis of the cchA cchB eutE eutJ eutG eutH gene cluster. J. Bacteriol. 177:1357-1366.
42. 12-dependent diol dehydratase: glycerol as both a good substrate and a potant inactivator. Biochem. Biophys. Res. Commun. 69:475-480.
43. Yu, D., J. A. Sawitzke, H. Ellis, and D. L. Court. 2003. Recombineering with overlapping single-stranded DNA oligonucleotides: testing a recombination intermediate. Proc. Natl. Acad. Sci. USA 100:7207-7212.