Erratum to "Gamma-irradiated RecD overproducers become permanent recB-/C- phenocopies for extrachromosomal DNA processing due to prolonged titration of RecBCD enzyme on damaged Escherichia coli chromosome" [Biochimie 88(3-4) (2006) 379-386] (DOI:10.1016/j.biochi.2005.11.003);Gamma-irradiated RecD overproducers become permanent recB-/C- phenocopies for extrachromosomal DNA processing due to prolonged titration of RecBCD enzyme on damaged Escherichia coli chromosome

Biochimie

Volumn 88, Issue 3-4, 2006, Pages 379-386

  Dermić, Damir ^a   Dermić, Edyta ^b   Zahradka, Davor ^a   Petranović, Mirjana ^a   Lerš, Nella ^a  

^a RUDER BO KOVI INSTITUTE   (Croatia)

^b UNIVERSITY OF ZAGREB   (Croatia)

Author keywords

Double strand break repair; RecBCD enzyme processivity; T4 2 phage plating; red gam phage recombination

Indexed keywords

BACTERIOPHAGE DNA; DOUBLE STRANDED DNA; EXODEOXYRIBONUCLEASE V; POLYPEPTIDE; RECD POLYPEPTIDE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL CHROMOSOME; BACTERIAL STRAIN; CONTROLLED STUDY; DEGRADATION; DNA DETERMINATION; DNA METABOLISM; DNA REPAIR; DNA STRAND BREAKAGE; ENZYME ACTIVITY; ENZYME INHIBITION; ESCHERICHIA COLI; GAMMA IRRADIATION; GENETIC RECOMBINATION; NONHUMAN; PHENOTYPE; TITRIMETRY; ULTRAVIOLET RADIATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 33645963437     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2007.03.012     Document Type: Erratum

References (43)

1. D.A. Arnold, S.C. Kowalczykowski, RecBCD helicase/nuclease, in: Encyclopedia of Life Science, Nature Publishing Group, London [Online.] http://www.els.net., 1999.
2. Kuzminov A. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol. Mol. Biol. Rev. 63 (1999) 751-813
3. Willets N.S., and Mount D.W. Genetic analysis of recombination-deficient mutants of Escherichia coli K-12 carrying rec mutations cotransducible with thyA. J. Bacteriol. 100 (1969) 923-934
4. Emmerson P.T. Recombination deficient mutants of Escherichia coli K12 that map between thyA and argA. Genetics 60 (1968) 19-30
5. Capaldo F., Ramsey G., and Barbour S.D. Analysis of the growth of recombination-deficient strains of Escherichia coli K-12. J. Bacteriol. 118 (1974) 242-249
6. Dillingham M.S., Spies M., and Kowalczykowski S.C. RecBCD enzyme is a bipolar DNA helicase. Nature 423 (2003) 893-897
7. Taylor A.F., and Smith G.R. RecBCD enzyme: a DNA helicase with fast and slow motors. Nature 423 (2003) 889-893
8. Dixon D.A., and Kowalczykowski S.C. The recombinational hotspot χ is a regulatory sequence that acts by attenuating the nuclease activity of the E. coli RecBCD enzyme. Cell 73 (1993) 87-96
9. Spies M., Bianco P.R., Dillingham M.S., Handa N., Baskin R.J., and Kowalczykowski S.C. A molecular throttle: the recombination hotspot χ controls DNA translocation by the RecBCD helicase. Cell 114 (2003) 647-654
10. Anderson D.G., and Kowalczykowski S.C. The recombination hot spot, Chi, is a regulatory element that switches the polarity of DNA degradation by the RecBCD enzyme. Genes Dev. 11 (1997) 571-581
11. Anderson D.G., and Kowalczykowski S.C. The translocating RecBCD enzyme stimulates recombination by directing RecA protein onto ssDNA in a χ-regulated manner. Cell 90 (1997) 77-86
12. Lam S.T., Stahl M.M., McMilin K.D., and Stahl F.W. Rec-mediated recombinational hot spot activity in bacteriophage lambda. II. A mutation which causes hot spot activity. Genetics 77 (1974) 425-433
13. Dixon D.A., Churchill J.J., and Kowalczykowski S.C. Reversible inactivation of the Escherichia coli RecBCD enzyme by the recombination hotspot χ in vitro: evidence for functional inactivation or loss of the RecD subunit. Proc. Natl. Acad. Sci. USA 91 (1994) 2980-2984
14. Amundsen S.K., Taylor A.F., and Smith G.R. The RecD subunit of the Escherichia coli RecBCD enzyme inhibits RecA loading, homologous recombination, and DNA repair. Proc. Natl. Acad. Sci. USA 97 (2000) 7399-7404
15. Myers R.S., Kuzminov A., and Stahl F.W. The recombination hot spot χ activates RecBCD recombination by converting Escherichia coli to a recD mutant phenocopy. Proc. Natl. Acad. Sci. USA 92 (1995) 6244-6248
16. Köppen A., Krobitsch S., Thoms B., and Wackernagel W. Interaction with the recombination hot spot χ in vivo converts the RecBCD enzyme of Escherichia coli into a χ-independent recombinase by inactivation of the RecD subunit. Proc. Natl. Acad. Sci. USA 92 (1995) 6249-6253
17. Dohoney K.M., and Gelles J. Chi-sequence recognition and DNA translocation by single RecBCD helicase/nuclease molecules. Nature 409 (2001) 370-374
18. Handa N., Bianco P.R., Baskin R.J., and Kowalczykowski S.C. Direct visualization of RecBCD movement reveals cotranslocation of the RecD motor after χ recognition. Mol. Cell 17 (2005) 745-750
19. Taylor A.F., and Smith G.R. RecBCD enzyme is altered upon cutting DNA at a Chi recombination hotspot. Proc. Natl. Acad. Sci. USA 89 (1992) 5226-5230
20. Amundsen S.K., Taylor A.F., and Smith G.R. recD: the gene for an essential third subunit of exonuclease V. Proc. Natl. Acad. Sci. USA 83 (1986) 5558-5562
21. Thaler D.S., Sampson E., Siddiqi I., Rosenberg S.M., Thomason L.C., Stahl F.W., and Stahl M.M. Recombination of bacteriophage lambda in recD mutants of Escherichia coli. Genome 31 (1989) 53-67
22. Churchill J.J., Anderson D.G., and Kowalczykowski S.C. The RecBC enzyme loads RecA protein onto ssDNA asymmetrically and independently of χ, resulting in constitutive recombination activation. Genes Dev. 13 (1999) 901-911
23. Korangy F., and Julin D.A. Efficiency of ATP hydrolysis and DNA unwinding by the RecBC enzyme from Escherichia coli. Biochemistry 33 (1994) 9552-9560
24. Korangy F., and Julin D.A. Kinetics and processivity of ATP hydrolysis and DNA unwinding by the RecBC enzyme from Escherichia coli. Biochemistry 32 (1993) 4873-4880
25. Brčić-Kostić K., Stojiljković I., Salaj-Šmic E., and Trgovčević Z.. Overproduction of the RecD polypeptide sensitizes Escherichia coli cells to γ-radiation. Mutat. Res. 281 (1992) 123-127
26. Miranda A., and Kuzminov A. Chromosomal lesion suppression and removal in Escherichia coli via linear DNA degradation. Genetics 163 (2003) 1255-1271
27. Singleton M.R., Dillingham M.S., Gaudier M., Kowalczykowski S.C., and Wigley D.B. Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks. Nature 432 (2004) 187-193
28. Dermić D., Halupecki E., Zahradka D., and Petranović M. RecBCD enzyme overproduction impairs DNA repair and homologous recombination in Escherichia coli. Res. Microbiol. 156 (2005) 304-311
29. Bachmann B.J. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. In: Neidhardt F.C., et al. (Ed). Escherichia coli and Salmonella: Cellular and Molecular Biology (1996), ASM Press, Washington, DC 2460-2488
30. Salaj-Šmic E., Dermić D., Brčić-Kostić K., Čogelja-Čajo G., and Trgovčević Z.. In vivo studies of the Escherichia coli RecB polypeptide lacking its nuclease center. Res. Microbiol. 151 (2000) 769-776
31. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning, a Laboratory Manual (1989), Cold Spring Harbor Laboratory Press, New York
32. Ponticelli A.S., Schultz D.W., Taylor A.Y., and Smith G.R. Chi-dependent DNA strand cleavage by RecBC enzyme. Cell 41 (1985) 145-151
33. Boehmer P.E., and Emmerson P.T. Escherichia coli RecBCD enzyme: inducible overproduction and reconstitution of the ATP-dependent deoxyribonuclease from purified subunits. Gene 102 (1991) 1-16
34. Miller J.H. A Short Course in Bacterial Genetics (1992.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
35. Arber W., Enquist L., Hohn B., Murray N., and Murray K. Experimental methods for use with lambda. In: Hendrix R.W., Roberts J.W., Stahl F.W., and Weisberg R.A. (Eds). Lambda II (1983), Cold Spring Harbor Laboratory Press, Plainview, NY 433-466
36. Jockovich M.E., and Myers R.S. Nuclease activity is essential for RecBCD recombination in Escherichia coli. Mol. Microbiol. 41 (2001) 949-962
37. Oliver D.B., and Goldberg E.B. Protection of parental T4 DNA from a restriction exonuclease by the product of gene 2. J. Mol. Biol. 116 (1977) 877-881
38. Brčić-Kostić K., Salaj-Šmic E., Maršić N., Kajić S., Stojiljković I., and Trgovčević Z.. Interaction of RecBCD enzyme with DNA damaged by gamma radiation. Mol. Gen. Genet. 228 (1991) 136-142
39. Pyle A.M. DNA repair: big engine finds small breaks. Nature 432 (2004) 157-158
40. Kuzminov A., Schabtach E., and Stahl F.W. χ-sites in combination with RecA protein increase the survival of linear DNA in E. coli by inactivating exoV activity of RecBCD nuclease. EMBO J. 13 (1994) 2764-2776
41. Kuzminov A., and Stahl F. Stability of linear DNA in recA mutant Escherichia coli cells reflects ongoing chromosomal DNA degradation. J. Bacteriol. 179 (1997) 880-888
42. Roman L.J., Eggleston A.K., and Kowalczykowski S.C. Processivity of the DNA helicase activity of Escherichia coli RecBCD enzyme. J. Biol. Chem. 267 (1992) 4207-4214
43. Myers R.S., Stahl M.M., and Stahl F.W. χ Recombination activity in phage λ decays as a function of genetic distance. Genetics 141 (1995) 805-812