-
1
-
-
11144355852
-
Large-scale recording of neuronal ensembles
-
Buzsaki G. Large-scale recording of neuronal ensembles. Nat Neurosci 7 (2004) 446-451
-
(2004)
Nat Neurosci
, vol.7
, pp. 446-451
-
-
Buzsaki, G.1
-
2
-
-
18944382753
-
Large-scale imaging of cortical network activity with calcium indicators
-
Ikegaya Y., Le Bon-Jego M., and Yuste R. Large-scale imaging of cortical network activity with calcium indicators. Neurosci Res 52 (2005) 132-138
-
(2005)
Neurosci Res
, vol.52
, pp. 132-138
-
-
Ikegaya, Y.1
Le Bon-Jego, M.2
Yuste, R.3
-
3
-
-
14144249743
-
Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex
-
This study demonstrates the state-of-the-art technology in two-photon calcium imaging by recording from thousands of cortical neurons in vivo. The authors exploit the single-neuron resolution of the technique to quantify the transitions in orientation selectivity at the edges of orientation columns in V1.
-
Ohki K., Chung S., Ch'ng Y.H., Kara P., and Reid R.C. Functional imaging with cellular resolution reveals precise micro-architecture in visual cortex. Nature 433 (2005) 597-603. This study demonstrates the state-of-the-art technology in two-photon calcium imaging by recording from thousands of cortical neurons in vivo. The authors exploit the single-neuron resolution of the technique to quantify the transitions in orientation selectivity at the edges of orientation columns in V1.
-
(2005)
Nature
, vol.433
, pp. 597-603
-
-
Ohki, K.1
Chung, S.2
Ch'ng, Y.H.3
Kara, P.4
Reid, R.C.5
-
4
-
-
0002842392
-
Population-level analysis of multi-single neuron recording data: multivariate statistical methods
-
Nicolelis M.A. (Ed), CRC Press
-
Chapin J.K. Population-level analysis of multi-single neuron recording data: multivariate statistical methods. In: Nicolelis M.A. (Ed). Methods for neural ensemble recordings (1999), CRC Press 193-228
-
(1999)
Methods for neural ensemble recordings
, pp. 193-228
-
-
Chapin, J.K.1
-
5
-
-
2142765521
-
Multiple neural spike train data analysis: state-of-the-art and future challenges
-
Brown E.N., Kass R.E., and Mitra P.P. Multiple neural spike train data analysis: state-of-the-art and future challenges. Nat Neurosci 7 (2004) 456-461
-
(2004)
Nat Neurosci
, vol.7
, pp. 456-461
-
-
Brown, E.N.1
Kass, R.E.2
Mitra, P.P.3
-
6
-
-
2442597086
-
Nonlinear population codes
-
Shamir M., and Sompolinsky H. Nonlinear population codes. Neural Comput 16 (2004) 1105-1136
-
(2004)
Neural Comput
, vol.16
, pp. 1105-1136
-
-
Shamir, M.1
Sompolinsky, H.2
-
7
-
-
0034704222
-
Nonlinear dimensionality reduction by locally linear embedding
-
Roweis S.T., and Saul L.K. Nonlinear dimensionality reduction by locally linear embedding. Science 290 (2000) 2323-2326
-
(2000)
Science
, vol.290
, pp. 2323-2326
-
-
Roweis, S.T.1
Saul, L.K.2
-
8
-
-
0141852938
-
Intensity versus identity coding in an olfactory system
-
Stopfer M., Jayaraman V., and Laurent G. Intensity versus identity coding in an olfactory system. Neuron 39 (2003) 991-1004
-
(2003)
Neuron
, vol.39
, pp. 991-1004
-
-
Stopfer, M.1
Jayaraman, V.2
Laurent, G.3
-
9
-
-
0032744823
-
Principal component analysis of neuronal ensemble activity reveals multidimensional somatosensory representations
-
Chapin J.K., and Nicolelis M.A. Principal component analysis of neuronal ensemble activity reveals multidimensional somatosensory representations. J Neurosci Methods 94 (1999) 121-140
-
(1999)
J Neurosci Methods
, vol.94
, pp. 121-140
-
-
Chapin, J.K.1
Nicolelis, M.A.2
-
10
-
-
10944233799
-
Global forebrain dynamics predict rat behavioral states and their transitions
-
The authors used frequency-domain representations of simultaneous LFP recordings from several brain regions to classify the behavioral states of rats. They used PCA to visualize state-space maps and plotted the trajectories and transitions between states. Importantly, they compared the results within individual animals.
-
Gervasoni D., Lin S.C., Ribeiro S., Soares E.S., Pantoja J., and Nicolelis M.A. Global forebrain dynamics predict rat behavioral states and their transitions. J Neurosci 24 (2004) 11137-11147. The authors used frequency-domain representations of simultaneous LFP recordings from several brain regions to classify the behavioral states of rats. They used PCA to visualize state-space maps and plotted the trajectories and transitions between states. Importantly, they compared the results within individual animals.
-
(2004)
J Neurosci
, vol.24
, pp. 11137-11147
-
-
Gervasoni, D.1
Lin, S.C.2
Ribeiro, S.3
Soares, E.S.4
Pantoja, J.5
Nicolelis, M.A.6
-
11
-
-
0042826822
-
Independent component analysis: algorithms and applications
-
Hyvarinen A., and Oja E. Independent component analysis: algorithms and applications. Neural Netw 13 (2000) 411-430
-
(2000)
Neural Netw
, vol.13
, pp. 411-430
-
-
Hyvarinen, A.1
Oja, E.2
-
13
-
-
2642584972
-
Modular premotor drives and unit bursts as primitives for frog motor behaviors
-
The authors sought to unmix electromyographic recordings from the hindlimbs of frogs during locomotory movements. They used ICA to identify bursts of activity (or independent muscle drives) that corresponded to the activation of groups of muscles.
-
Hart C.B., and Giszter S.F. Modular premotor drives and unit bursts as primitives for frog motor behaviors. J Neurosci 24 (2004) 5269-5282. The authors sought to unmix electromyographic recordings from the hindlimbs of frogs during locomotory movements. They used ICA to identify bursts of activity (or independent muscle drives) that corresponded to the activation of groups of muscles.
-
(2004)
J Neurosci
, vol.24
, pp. 5269-5282
-
-
Hart, C.B.1
Giszter, S.F.2
-
14
-
-
0037421736
-
Multineuronal firing patterns in the signal from eye to brain
-
Schnitzer M.J., and Meister M. Multineuronal firing patterns in the signal from eye to brain. Neuron 37 (2003) 499-511
-
(2003)
Neuron
, vol.37
, pp. 499-511
-
-
Schnitzer, M.J.1
Meister, M.2
-
15
-
-
0345768782
-
Analyzing neural responses to natural signals: maximally informative dimensions
-
Sharpee T., Rust N.C., and Bialek W. Analyzing neural responses to natural signals: maximally informative dimensions. Neural Comput 16 (2004) 223-250
-
(2004)
Neural Comput
, vol.16
, pp. 223-250
-
-
Sharpee, T.1
Rust, N.C.2
Bialek, W.3
-
16
-
-
0034768759
-
Neural assemblies: technical issues, analysis, and modeling
-
Gerstein G.L., and Kirkland K.L. Neural assemblies: technical issues, analysis, and modeling. Neural Netw 14 (2001) 589-598
-
(2001)
Neural Netw
, vol.14
, pp. 589-598
-
-
Gerstein, G.L.1
Kirkland, K.L.2
-
17
-
-
0003922190
-
-
Duda R.O., Hart P.E., and Stork D.G. (Eds), Wiley-Interscience. This text provides a good mathematical introduction to many classification and discrimination algorithms.
-
In: Duda R.O., Hart P.E., and Stork D.G. (Eds). Pattern Classification (2000), Wiley-Interscience. This text provides a good mathematical introduction to many classification and discrimination algorithms.
-
(2000)
Pattern Classification
-
-
-
18
-
-
0030297850
-
Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability
-
Fee M.S., Mitra P.P., and Kleinfeld D. Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability. J Neurosci Methods 69 (1996) 175-188
-
(1996)
J Neurosci Methods
, vol.69
, pp. 175-188
-
-
Fee, M.S.1
Mitra, P.P.2
Kleinfeld, D.3
-
20
-
-
25644434894
-
Population dynamics of face-responsive neurons in the inferior temporal cortex
-
Matsumoto N., Okada M., Sugase-Miyamoto Y., Yamane S., and Kawano K. Population dynamics of face-responsive neurons in the inferior temporal cortex. Cereb Cortex 15 (2005) 1103-1112
-
(2005)
Cereb Cortex
, vol.15
, pp. 1103-1112
-
-
Matsumoto, N.1
Okada, M.2
Sugase-Miyamoto, Y.3
Yamane, S.4
Kawano, K.5
-
21
-
-
0035793358
-
Dynamic optimization of odor representations by slow temporal patterning of mitral cell activity
-
Friedrich R.W., and Laurent G. Dynamic optimization of odor representations by slow temporal patterning of mitral cell activity. Science 291 (2001) 889-894
-
(2001)
Science
, vol.291
, pp. 889-894
-
-
Friedrich, R.W.1
Laurent, G.2
-
22
-
-
0037849943
-
Neural activity in prefrontal cortex during copying geometrical shapes. II. Decoding shape segments from neural ensembles
-
Averbeck B.B., Crowe D.A., Chafee M.V., and Georgopoulos A.P. Neural activity in prefrontal cortex during copying geometrical shapes. II. Decoding shape segments from neural ensembles. Exp Brain Res 150 (2003) 142-153
-
(2003)
Exp Brain Res
, vol.150
, pp. 142-153
-
-
Averbeck, B.B.1
Crowe, D.A.2
Chafee, M.V.3
Georgopoulos, A.P.4
-
23
-
-
1542375343
-
Wavelet-based processing of neuronal spike trains prior to discriminant analysis
-
Laubach M. Wavelet-based processing of neuronal spike trains prior to discriminant analysis. J Neurosci Methods 134 (2004) 159-168
-
(2004)
J Neurosci Methods
, vol.134
, pp. 159-168
-
-
Laubach, M.1
-
24
-
-
21244494853
-
A two-stage linear discriminant analysis via QR-decomposition
-
Ye J., and Li Q. A two-stage linear discriminant analysis via QR-decomposition. IEEE Trans Pattern Anal Mach Intell 27 (2005) 929-941
-
(2005)
IEEE Trans Pattern Anal Mach Intell
, vol.27
, pp. 929-941
-
-
Ye, J.1
Li, Q.2
-
26
-
-
1842733200
-
Odor-driven attractor dynamics in the antennal lobe allow for simple and rapid olfactory pattern classification
-
The authors recorded calcium signals from ∼20 glomeruli in the antennal lobe of honeybees. Following odor stimulation, they used an SVM algorithm to analyze the different phases of responses along trajectories in the multidimensional-phase space.
-
Fdez Galan R., Sachse S., Galizia C.G., and Herz A.V. Odor-driven attractor dynamics in the antennal lobe allow for simple and rapid olfactory pattern classification. Neural Comput 16 (2004) 999-1012. The authors recorded calcium signals from ∼20 glomeruli in the antennal lobe of honeybees. Following odor stimulation, they used an SVM algorithm to analyze the different phases of responses along trajectories in the multidimensional-phase space.
-
(2004)
Neural Comput
, vol.16
, pp. 999-1012
-
-
Fdez Galan, R.1
Sachse, S.2
Galizia, C.G.3
Herz, A.V.4
-
27
-
-
0347088824
-
Spatiotemporal tuning of motor cortical neurons for hand position and velocity
-
Paninski L., Fellows M.R., Hatsopoulos N.G., and Donoghue J.P. Spatiotemporal tuning of motor cortical neurons for hand position and velocity. J Neurophysiol 91 (2004) 515-532
-
(2004)
J Neurophysiol
, vol.91
, pp. 515-532
-
-
Paninski, L.1
Fellows, M.R.2
Hatsopoulos, N.G.3
Donoghue, J.P.4
-
28
-
-
1542723013
-
PSTH-based classification of sensory stimuli using ensembles of single neurons
-
Foffani G., and Moxon K.A. PSTH-based classification of sensory stimuli using ensembles of single neurons. J Neurosci Methods 135 (2004) 107-120
-
(2004)
J Neurosci Methods
, vol.135
, pp. 107-120
-
-
Foffani, G.1
Moxon, K.A.2
-
30
-
-
0003684449
-
-
Springer-Verlag. The text covers a wide range of supervised-learning algorithms for machine learning, using real-world examples.
-
Hastie T., Tibshirani R., and Friedman J. The Elements of Statistical Learning: Data Mining, Inference, and Prediction (2001), Springer-Verlag. The text covers a wide range of supervised-learning algorithms for machine learning, using real-world examples.
-
(2001)
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
31
-
-
0348226887
-
Principal component and linear discriminant analyses of free amino acids and biogenic amines in hungarian wines
-
This study is a reminder that the analysis techniques used in systems neuroscience are also commonly used in many different research fields, from economics to meteorology and oenology.
-
Heberger K., Csomos E., and Simon-Sarkadi L. Principal component and linear discriminant analyses of free amino acids and biogenic amines in hungarian wines. J Agric Food Chem 51 (2003) 8055-8060. This study is a reminder that the analysis techniques used in systems neuroscience are also commonly used in many different research fields, from economics to meteorology and oenology.
-
(2003)
J Agric Food Chem
, vol.51
, pp. 8055-8060
-
-
Heberger, K.1
Csomos, E.2
Simon-Sarkadi, L.3
-
32
-
-
0036832159
-
Olfactory network dynamics and the coding of multidimensional signals
-
Laurent G. Olfactory network dynamics and the coding of multidimensional signals. Nat Rev Neurosci 3 (2002) 884-895
-
(2002)
Nat Rev Neurosci
, vol.3
, pp. 884-895
-
-
Laurent, G.1
-
33
-
-
21544449122
-
Fidelity of the ensemble code for visual motion in primate retina
-
Using a planar electrode array, the authors simultaneously recorded a large population of retinal ganglion cells (RGCs) from primate retina during a moving-bar stimulus. Combining the spatial and temporal aspects of the signals, they calculated the precision with which populations of RGCs represent the speed of moving stimuli.
-
Frechette E.S., Sher A., Grivich M.I., Petrusca D., Litke A.M., and Chichilnisky E.J. Fidelity of the ensemble code for visual motion in primate retina. J Neurophysiol 94 (2005) 119-135. Using a planar electrode array, the authors simultaneously recorded a large population of retinal ganglion cells (RGCs) from primate retina during a moving-bar stimulus. Combining the spatial and temporal aspects of the signals, they calculated the precision with which populations of RGCs represent the speed of moving stimuli.
-
(2005)
J Neurophysiol
, vol.94
, pp. 119-135
-
-
Frechette, E.S.1
Sher, A.2
Grivich, M.I.3
Petrusca, D.4
Litke, A.M.5
Chichilnisky, E.J.6
-
34
-
-
27744438719
-
Neural codes for perceptual discrimination in primary somatosensory cortex
-
Luna R., Hernandez A., Brody C.D., and Romo R. Neural codes for perceptual discrimination in primary somatosensory cortex. Nat Neurosci 8 (2005) 1210-1219
-
(2005)
Nat Neurosci
, vol.8
, pp. 1210-1219
-
-
Luna, R.1
Hernandez, A.2
Brody, C.D.3
Romo, R.4
-
35
-
-
3342970973
-
Multiplexing using synchrony in the zebrafish olfactory bulb
-
Friedrich R.W., Habermann C.J., and Laurent G. Multiplexing using synchrony in the zebrafish olfactory bulb. Nat Neurosci 7 (2004) 862-871
-
(2004)
Nat Neurosci
, vol.7
, pp. 862-871
-
-
Friedrich, R.W.1
Habermann, C.J.2
Laurent, G.3
-
36
-
-
2442443907
-
Dynamics of olfactory bulb input and output activity during odor stimulation in zebrafish
-
Friedrich R.W., and Laurent G. Dynamics of olfactory bulb input and output activity during odor stimulation in zebrafish. J Neurophysiol 91 (2004) 2658-2669
-
(2004)
J Neurophysiol
, vol.91
, pp. 2658-2669
-
-
Friedrich, R.W.1
Laurent, G.2
-
37
-
-
2142653516
-
Using multi-neuron population recordings for neural prosthetics
-
Chapin J.K. Using multi-neuron population recordings for neural prosthetics. Nat Neurosci 7 (2004) 452-455
-
(2004)
Nat Neurosci
, vol.7
, pp. 452-455
-
-
Chapin, J.K.1
-
38
-
-
0037118078
-
What songbirds teach us about learning
-
Brainard M.S., and Doupe A.J. What songbirds teach us about learning. Nature 417 (2002) 351-358
-
(2002)
Nature
, vol.417
, pp. 351-358
-
-
Brainard, M.S.1
Doupe, A.J.2
-
39
-
-
3242688751
-
Neural mechanisms of vocal sequence generation in the songbird
-
Fee M.S., Kozhevnikov A.A., and Hahnloser R.H. Neural mechanisms of vocal sequence generation in the songbird. Ann N Y Acad Sci 1016 (2004) 153-170
-
(2004)
Ann N Y Acad Sci
, vol.1016
, pp. 153-170
-
-
Fee, M.S.1
Kozhevnikov, A.A.2
Hahnloser, R.H.3
-
40
-
-
12744280678
-
Ensemble coding of vocal control in birdsong
-
Leonardo A., and Fee M.S. Ensemble coding of vocal control in birdsong. J Neurosci 25 (2005) 652-661
-
(2005)
J Neurosci
, vol.25
, pp. 652-661
-
-
Leonardo, A.1
Fee, M.S.2
-
41
-
-
0029746196
-
Temporal hierarchical control of singing in birds
-
Yu A.C., and Margoliash D. Temporal hierarchical control of singing in birds. Science 273 (1996) 1871-1875
-
(1996)
Science
, vol.273
, pp. 1871-1875
-
-
Yu, A.C.1
Margoliash, D.2
-
42
-
-
21544435722
-
Midbrain dopamine neurons encode a quantitative reward prediction error signal
-
Bayer H.M., and Glimcher P.W. Midbrain dopamine neurons encode a quantitative reward prediction error signal. Neuron 47 (2005) 129-141
-
(2005)
Neuron
, vol.47
, pp. 129-141
-
-
Bayer, H.M.1
Glimcher, P.W.2
-
43
-
-
17844396920
-
Choosing the greater of two goods: neural currencies for valuation and decision making
-
Sugrue L.P., Corrado G.S., and Newsome W.T. Choosing the greater of two goods: neural currencies for valuation and decision making. Nat Rev Neurosci 6 (2005) 363-375
-
(2005)
Nat Rev Neurosci
, vol.6
, pp. 363-375
-
-
Sugrue, L.P.1
Corrado, G.S.2
Newsome, W.T.3
-
44
-
-
13244291585
-
A representation of the hazard rate of elapsed time in macaque area LIP
-
Janssen P., and Shadlen M.N. A representation of the hazard rate of elapsed time in macaque area LIP. Nat Neurosci 8 (2005) 234-241
-
(2005)
Nat Neurosci
, vol.8
, pp. 234-241
-
-
Janssen, P.1
Shadlen, M.N.2
-
45
-
-
27744438719
-
Neural codes for perceptual discrimination in primary somatosensory cortex
-
Luna R., Hernandez A., Brody C.D., and Romo R. Neural codes for perceptual discrimination in primary somatosensory cortex. Nat Neurosci 8 (2005) 1210-1219
-
(2005)
Nat Neurosci
, vol.8
, pp. 1210-1219
-
-
Luna, R.1
Hernandez, A.2
Brody, C.D.3
Romo, R.4
-
46
-
-
13644261674
-
Optical imaging of neuronal populations during decision-making
-
Briggman K.L., Abarbanel H.D., and Kristan Jr. W.B. Optical imaging of neuronal populations during decision-making. Science 307 (2005) 896-901
-
(2005)
Science
, vol.307
, pp. 896-901
-
-
Briggman, K.L.1
Abarbanel, H.D.2
Kristan Jr., W.B.3
-
50
-
-
14044262855
-
Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
-
Denk W., and Horstmann H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol 2 (2004) e329
-
(2004)
PLoS Biol
, vol.2
-
-
Denk, W.1
Horstmann, H.2
-
51
-
-
0038644225
-
All-optical histology using ultrashort laser pulses
-
Tsai P.S., Friedman B., Ifarraguerri A.I., Thompson B.D., Lev-Ram V., Schaffer C.B., Xiong Q., Tsien R.Y., Squier J.A., and Kleinfeld D. All-optical histology using ultrashort laser pulses. Neuron 39 (2003) 27-41
-
(2003)
Neuron
, vol.39
, pp. 27-41
-
-
Tsai, P.S.1
Friedman, B.2
Ifarraguerri, A.I.3
Thompson, B.D.4
Lev-Ram, V.5
Schaffer, C.B.6
Xiong, Q.7
Tsien, R.Y.8
Squier, J.A.9
Kleinfeld, D.10
-
52
-
-
15944398014
-
A molecular and genetic arsenal for systems neuroscience
-
Callaway E.M. A molecular and genetic arsenal for systems neuroscience. Trends Neurosci 28 (2005) 196-201
-
(2005)
Trends Neurosci
, vol.28
, pp. 196-201
-
-
Callaway, E.M.1
-
53
-
-
23244433828
-
Optical imaging and control of genetically designated neurons in functioning circuits
-
Miesenbock G., and Kevrekidis I.G. Optical imaging and control of genetically designated neurons in functioning circuits. Annu Rev Neurosci 28 (2005) 533-563
-
(2005)
Annu Rev Neurosci
, vol.28
, pp. 533-563
-
-
Miesenbock, G.1
Kevrekidis, I.G.2
-
54
-
-
12344309164
-
Light-activated ion channels for remote control of neuronal firing
-
Banghart M., Borges K., Isacoff E., Trauner D., and Kramer R.H. Light-activated ion channels for remote control of neuronal firing. Nat Neurosci 7 (2004) 1381-1386
-
(2004)
Nat Neurosci
, vol.7
, pp. 1381-1386
-
-
Banghart, M.1
Borges, K.2
Isacoff, E.3
Trauner, D.4
Kramer, R.H.5
|