Chloroplast-mediated regulation of nuclear genes in Arabidopsis thaliana in the absence of light stress

Physiological Genomics

Volumn 25, Issue 1, 2006, Pages 142-152

  Piippo, Mirva ^a   Allahverdiyeva, Yagut ^a   Paakkarinen, Virpi ^a   Suoranta, Ulla Maija ^a   Battchikova, Natalia ^a   Aro, Eva Mari ^a  

^a UNIVERSITY OF TURKU   (Finland)

Author keywords

Carbohydrate metabolism; Light acclimation; Photosynthesis; Plastoquinone pool; Redox regulation

Indexed keywords

CYTOPLASM PROTEIN; PLASTOQUINONE; PROTEIN DNAJ; REACTIVE OXYGEN METABOLITE; TREHALOSE; TREHALOSE 6 PHOSPHATE SYNTHETASE; UNCLASSIFIED DRUG;

ANALYTIC METHOD; ARABIDOPSIS; ARTICLE; CARBON DIOXIDE FIXATION; CHLOROPLAST; ELECTRON TRANSPORT; ENVIRONMENTAL FACTOR; GENE EXPRESSION; GENETIC CODE; GLYCOLYSIS; METABOLITE; NONHUMAN; OXIDATION REDUCTION REACTION; OXIDATION REDUCTION STATE; PHOTOSYNTHESIS; PRIORITY JOURNAL; STEADY STATE; STRESS; STROMA;

ACCLIMATIZATION; ARABIDOPSIS; CARBON DIOXIDE; CELL NUCLEUS; CHLOROPLASTS; DARKNESS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; LIGHT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; OXIDATION-REDUCTION; PHOTOSYNTHESIS; PLANT PROTEINS; REPRODUCIBILITY OF RESULTS; RNA, MESSENGER; SIGNAL TRANSDUCTION; TIME FACTORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 33645785098     PISSN: 10948341     EISSN: 15312267     Source Type: Journal    
DOI: 10.1152/physiolgenomics.00256.2005     Document Type: Article

References (53)

1. Allen JF. A redox switch hypothesis for the origin of two light reactions in photosynthesis. FEBS Lett 579: 963-968, 2005.
2. Allen JF, Bennett J, Steinback KE, and Arnzen CJ. Chloroplast protein phosphorylation couples plastoquinone redox state to distribution of excitation energy between photosystems. Nature 291: 25-29, 1981.
3. Aro EM and Ohad I. Redox regulation of thylakoid protein phosphorylation. Antioxid Redox Signal 5: 55-67, 2003.
4. Baena-Gonzalez E, Baginsky S, Mulo P, Summer H, Aro EM, and Link G. Chloroplast transcription at different light intensities. Glutathione-mediated phosphorylation of the major RNA polymerase involved in redox-regulated organellar gene expression. Plant Physiol 127: 1044-1052, 2001.
5. Baena-González E, Barbato R, and Aro EM. Role of phosphorylation in the repair cycle and oligomeric structure of photosystem II. Planta 208: 196-204, 1999.
6. Baginsky S, Tiller K, Pfannschmidt T, and Link G. PTK, the chloroplast RNA polymerase-associated protein kinase from mustard (Sinapis alba), mediates redox control of plastid in vitro transcription. Plant Mol Biol 39: 1013-1023, 1999.
7. Ball L, Accotto GP, Bechtold U, Creissen G, Funck D, Jimenez A, Kular B, Leyland N, Mejia-Carranza J, Reynolds H, Karpinski S, and Mullineaux PM. Evidence for a direct link between glutathione biosynthesis and stress defense gene expression in Arabidopsis. Plant Cell 16: 2448-2462, 2004.
8. Chen YB, Durnford DG, Koblizek M, and Falkowski PG. Plastid regulation of Lhcb 1 transcription in the chlorophyte alga Dunaliella tertiolecta. Plant Physiol 136: 3737-3750, 2004.
9. Colbert JT, Hershey HP, and Quail PH. Autoregulation control of translatable phytochrome mRNA levels. Proc Natl Acad Sci USA 80: 2248-2252, 1983.
10. Desikan R, Mackerness S, Hancock JT, and Neill SJ. Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol 127: 159-172, 2001.
11. Emanuelsson O, Nielsen H, Brunak S, and von Heijne G. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J Mol Biol 300: 1005-1016, 2000.
12. Escoubas J, Lomas M, LaRoche J, and Falkowski PG. Light intensity regulation of cab gene transcription is signaled by the redox state of the plastoquinone pool. Proc Natl Acad Sci USA 92: 10237-10241, 1995.
13. Fey V, Wagner R, Brautigam K, Wirtz M, Hell R, Dietzmann A, Leister D, Oelmüller R, and Pfannschmidt T. Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana. J Biol Chem 280: 5318-5328, 2005.
14. Foyer CH and Noctor G. Redox sensing and signalling associated with reactive oxygen in chloroplasts, peroxisomes and mitochondria. Physiol Plant 119: 355-364, 2003.
15. Goddijn OJM and van Dun K. Trehalose metabolism in plants. Trends Plant Sci 4: 315-319, 1999.
16. Hihara Y, Sonoike K, Kanehisa M, and Ikeuchi M. DNA microarray analysis of redox-responsive genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803. J Bacteriol 185: 1719-1725, 2003.
17. Johanningmeier U. Possible control of transcript levels by chlorophyll precursors in Chlamydomonas. Eur J Biochem 177: 417-424, 1988.
18. Karpinski S, Escobar C, Karpinska B, Creissen G, and Mullineaux PM. PhotoSynthetic electron transport regulates the expression of cytosolic ascorbate peroxidase genes in Arabidopsis during excess light stress. Plant Cell 9: 627-640, 1997.
19. Keränen M, Aro EM, and Tyysjärvi E. Excitation-emission map as a tool in studies of photosynthetic pigment-protein complexes. Photosynthetica 37: 225-237, 1999.
20. Kimura M, Yamamoto YY, Seki M, Sakurai T, Sato M, Abe T, Yoshida S, Manabe K, Shinozaki K, and Matsui M. Identification of Arabidopsis genes regulated by high light-stress using cDNA microarray. Photochem Photobiol 77: 226-233, 2003.
21. Kolbe A, Tiessen A, Schluepmann H, Paul M, Ulrich S, and Geigenberger P. Trehalose 6-phosphate regulates starch synthesis via posttranslational redox activation of ADP-glucose pyrophosphorylase. Proc Natl Acad Sci USA 102: 11118-11123, 2005.
22. Kuno N and Furuya M. Phytochrome regulation of nuclear gene expression in plants. Semin Cell Dev Biol 11: 485-493, 2000.
23. Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685, 1970.
24. Ma L, Li J, Qu L, Hager J, Chen Z, Zhao H, and Deng XW. Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways. Plant Cell 13: 2589-2607, 2001.
25. Maxwell DP, Laudenbach DE, and Huner PA. Redox regulation of light harvesting complex II and cab mRNA abundance in Dunaliella salina. Plant Physiol 109: 787-795, 1995.
26. Miginiac-Maslow M and Lancelin JM. Intrasteric inhibition in redox signalling: light activation of NADP-malate dehydrogenase. Photos Res 72: 1-12, 2002.
27. Mittler R, Vanderauwera S, Gollery M, and Van Breusegem F. Reactive oxygen gene network of plants. Trends Plant Sci 9: 490-498, 2004.
28. Oswald O, Martin T, Dominy PJ, and Graham IA. Plastid redox state and sugars: interactive regulators of nuclear-encoded photosynthetic gene expression. Proc Natl Acad Sci USA 98: 2047-2052, 2001.
29. Palenchar PM, Kouranov A, Lejay LV, and Coruzzi GM. Genomewide patterns of carbon and nitrogen regulation of gene expression validate the combined carbon and nitrogen (CN)-signaling hypothesis in plants. Genome Biol 5: R91, 2004.
30. Perelman S, Mazzella MA, Muschietti J, Zhu T, and Casal JJ. Finding unexpected patterns in microarray data. Plant Physiol 133: 1717-1725, 2003.
31. Petracek ME, Dickey LF, Nguyen TT, Gatz C, Sowinski DA, Allen GC, and Thompson WF. Ferredoxin-1 mRNA is destabilized by changes in photosynthetic electron transport. Proc Natl Acad Sci USA 95: 9009-9013, 1998.
32. Pfannschmidt T. Chloroplast redox signals: how photosynthesis controls its own genes. Trends Plant Sci 8: 33-41, 2003.
33. Pfannschmidt T, Allen JF, and Oelmüller R. Principles of redox control in photosynthesis gene expression. Physiol Plant 112: 1-9, 2001.
34. Pfannschmidt T, Schutze K, Brost M, and Oelmuller R. A novel mechanism of nuclear photosynthesis gene regulation by redox signals from the chloroplast during photosystem stoichiometry adjustment. J Biol Chem 276: 36125-36130, 2001.
35. Porra RJ, Thompson WA, and Kriedemann PE. Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophyll a and b with four different solvents: verification of the concentration of chlorophyll by atomic absorption spectroscopy. Biochim Biophys Acta 975: 384-394, 1989.
36. Pursiheimo S, Mulo P, Rintamaki E, and Aro EM. Coregulation of light-harvesting complex II phosphorylation and lhcb mRNA accumulation in winter rye. Plant J 26: 317-327, 2001.
37. Rintamäki E, Martinsuo P, Pursiheimo S, and Aro EM. Cooperative regulation of light-harvesting complex II phosphorylation via the plastoquinol and ferredoxin-thioredoxin system in chloroplasts. Proc Natl Acad Sci USA 97: 11644-11649, 2000.
38. Rossel JB, Wilson IW, and Pogson BJ. Global changes in gene expression in response to high light in Arabidopsis. Plant Physiol 130: 1109-1120, 2002.
39. Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Guldener U, Mannhaupt G, Munsterkotter M, and Mewes HW. The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res 32: 5539-5545, 2004.
40. Sambrook J, Fritsch EF, and Maniatis T. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory, 1989.
41. Scheibe R. Malate valves to balance cellular energy supply. Physiol Plant 120: 21-26, 2004.
42. Scheibe R and Stitt M. Comparison of NADP-malate dehydrogenase activation, QA reduction and O2 evolution in spinach leaves. Plant Physiol Biochem 26: 473-481, 1988.
43. Schluepmann H, Pellny T, van Dijken A, Smeekens S, and Paul M. Trehalose 6-phosphate is indispensable for carbohydrate utilization and growth in Arabidopsis thaliana. Proc Natl Acad Sci USA 100: 6849-6854, 2003.
44. Sherameti I, Sopory SK, Trebicka A, Pfannschmidt T, and Oelmüller R. Photosynthetic electron transport determines nitrate reductase gene expression and activity in higher plants. J Biol Chem 277: 46594-46600, 2002.
45. Storey JD and Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100: 9440-9445, 2003.
46. Strand A. Plastid-to-nucleus signalling. Curr Opin Plant Biol 7: 621-625, 2004.
47. Sullivan JA and Deng XW. From seed to seed: the role of photoreceptors in Arabidopsis development. Dev Biol 260: 289-297, 2003.
48. Takahashi S, Seki M, Ishida J, Satou M, Sakurai T, Narusaka M, Kamiya A, Nakajima M, Enju A, Akiyama K, Yamaguchi-Shinozaki K, and Shinozaki K. Monitoring the expression profiles of genes induced by hyperosmotic, high salinity, and oxidative stress and abscisic acid treatment in Arabidopsis cell culture using a full-length cDNA microarray. Plant Mol Biol 56: 29-55, 2004.
49. Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, and Stitt M. MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37: 914-939, 2004.
50. Thum KE, Shin MJ, Palenchar PM, Kouranov A, and Coruzzi GM. Genome-wide investigation of light and carbon-signaling interactions in Arabidopsis. Genome Biol 5: R10, 2004.
51. Tullberg A, Alexciev K, Pfannschmidt T, and Allen JF. Photosynthetic electron flow regulates transcription of the psaB gene in pea (Pisum sativum L.) chloroplasts through the redox state of the plastoquinone pool. Plant Cell Physiol 41: 1045-1054, 2000.
52. Walters RG. Towards an understanding of photosynthetic acclimation. J Exp Bot 56: 435-447, 2005.
53. Yang DH, Andersson B, Aro EM, and Ohad I. The redox state of the plastoquinone pool controls the level of the light-harvesting chlorophyll a/b binding protein complex II (LHC II) during photoacclimation. Photos Res 68: 163-174, 2001.