Fungicide sensitivity and phylogenetic relationship of anthracnose fungi isolated from various fruit crops in Japan

Plant Disease

Volumn 90, Issue 4, 2006, Pages 506-512

  Chung, Wen Hsin ^a,b   Ishii, Hideo ^a   Nishimura, Kumiko ^a   Fukaya, Masako ^c   Yano, Kazutaka ^d   Kajitani, Yuji ^e  

^a NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

^b NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^c Akita Fruit Tree Experiment Station   (Japan)

^d Kochi Agricultural Research Center   (Japan)

^e FUKUOKA AGRICULTURAL RESEARCH CENTER   (Japan)

Author keywords

tubulin gene; Benzimidazole fungicides

Indexed keywords

DISEASES; DNA; FRUITS; FUNGI; FUNGICIDES; GENES;

Β-TUBULIN GENES; ANTHRACNOSE DISEASES; BENZIMIDAZOLE FUNGICIDES; INTERNAL TRANSCRIBED SPACER (ITS); MOLECULAR PHYLOGENY;

MICROORGANISMS;

DISEASES; FRUITS; FUNGI; FUNGICIDES; GENES; MICROORGANISMS; NUCLEIC ACIDS;

ACACIA; COLLETOTRICHUM; FUNGI; GLOMERELLA CINGULATA;

EID: 33645297938     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PD-90-0506     Document Type: Article

References (45)

1. Albertini, C., Gredt, M., and Leroux, P. 1999. Mutations of the β-tubulin gene associated with different phenotypes of benzimidazole resistance in the cereal eyespot fungi Tapesia yallundae and Tapesia acuformis. Pestic. Biochem. Physiol. 64:17-31.
2. Bernstein, B., Zehr, E. I., Dean, R. A., and Shabi, E. 1995. Characteristics of Colletotrichum from peach, apple, pecan, and other hosts. Plant Dis. 79:478-482.
3. Cannon, P. F., Bridge, P. D., and Monte, E. 2000. Linking the past, present, and future of Colletotrichum systematics. Pages 1-20 in: Host Specificity, Pathology, and Host-Pathogen Interactions of Colletotrichum. D. Prusky, S. Freeman, and M. B. Dickman, eds. American Phytopathological Society, St. Paul, MN.
4. Chung, W.-H., and Tsukiboshi, T. 2005. A new species of Curvularia from Japan. Mycotaxon 91:49-54.
5. Correll, J. C., Guerber, J. C., Wasilwa, L. A., Sherrill, J. F., and Morelock, T. E. 2000. Inter-and intra-species variation in Colletotrichum and mechanisms which affect population structure. Pages 145-179 in: Host Specificity, Pathology, and Host-Pathogen Interactions of Colletotrichum. D. Prusky, S. Freeman, and M. B. Dickman, eds. American Phytopathological Society, St. Paul, MN.
6. De Waard, M. A. 1997. Significance of ABC transporters in fungicide sensitivity and resistance. Pestic. Sci. 51:271-275.
7. Del Sorbo, G., Andrade, A. C., Van Nistelrooy, J. A. L., Balzi, E., and De Waard, M. A. 1997. Multidrug resistance in Aspergillus nidulans involves novel ATP-binding cassette transporters. Mol. Gen. Genet. 254:417-426.
8. Felsenstein, J. 1985. Confidence limits on phytogenies: An approach using the bootstrap. Evolution 39:783-791.
9. Förster, H., and Adaskaveg, J. E. 1999. Identification of subpopulations of Colletotrichum acutatum and epidemiology of almond anthracnose in California. Phytopathology 89:1056-1065.
10. Freeman, S. 2000. Genetic diversity and host specificity of Colletotrichum species on various fruits. Pages 131-144 in: Host Specificity, Pathology, and Host-Pathogen Interactions of Colletotrichum. D. Prusky, S. Freeman, and M. B. Dickman, eds. American Phytopathological Society, St. Paul, MN.
11. Freeman, S., Minz, D., Maymon, M., and Zveibil, A. 2001. Genetic diversity within Colletotrichum acutatum sensu Simmonds. Phytopathology 91:586-592.
12. Freeman, S., and Shabi, E. 1996. Cross-infection of subtropical and temperate fruits by Colletotrichum species from various hosts. Physiol. Mol. Plant Pathol. 49:395-404.
13. Fukaya, M. 2001. Control of grapevine ripe rot and fluctuation of fungicide sensitivity of the pathogen. Abstr. 11th Sympos. Res. Comm. Fungic. Resistance, Phytopathol. Soc. Jpn.: 9-15 (In Japanese with English summary).
14. Fukaya, M. 2002. Different sensitivity to iminoctadine-triacetate in two fungal pathogens of grape ripe rot. Jpn. J. Phytopathol. 68:263-264 (Japanese abstr.).
15. Fukaya, M. 2004. First report of Japanese pear anthracnose disease caused by Colletotrichum acutatum and its chemical control. Jpn. J. Phytopathol. 70:184-189 (In Japanese with English abstr.).
16. Goodwin, D. C., and Lee, S. B. 1993. Microwave miniprep of total genomic DNA from fungi, plants, protists and animals for PCR. Biotechniques 15:438-444.
17. Ishii, H. 2002. DNA-based approaches for diagnosis of fungicide resistance. Pages 242-259 in: Agrochemical Resistance: Extent, Mechanism, and Detection. J. M. Clark and I. Yamaguchi, eds. American Chemical Society, Washington, DC.
18. Ishii, H., Iwamoto, S., Nishimura, K., and Fukaya, M. 1998. Comparative studies on fungicide sensitivity and other characteristics in Colletotrichum isolated from various plant species. Proc. 1998 Brighton Conf. - Pests Dis., 529-534.
19. Jeffries, P., Dodd, J. C., Jeger, M. J., and Plumbley, R. A. 1990. The biology and control of Colletotrichum species on tropical fruit. Plant Pathol. 39:343-366.
20. Johnston, P. P., and Jones, D. 1997. Relationships among Colletotrichum isolates from fruit-rots assessed using rDNA sequences. Mycologia 89:420-430.
21. Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
22. Koenraadt, H., Somerville, S. C., and Jones, A. L. 1992. Characterization of mutations in the beta-tubulin gene of benomyl-resistant field strains of Venturia inaequalis and other plant pathogenic fungi. Phytopathology 82:1348-1354.
23. Martínez-Culebras, P. V., Querol, A., Suarez-Fernandez, M. B., Garcla-Lopez, M. D., and Barrio, E. 2003. Phylogenetic relationships among Colletotrichum pathogens of strawberry and design of PCR primer for their identification. J. Phytopathol. 151:135-143.
24. Mills, P. R., Sreenivasaprasad, S., and Brown, A. E. 1992. Detection and differentiation of Colletotrichum gloeosporioides isolates using PCR. FEMS Microbiol. Lett. 98:137-144.
25. Moriwaki, J., Tsukiboshi, T., and Sato, T. 2002, Grouping of Colletotrichum species in Japan based on rDNA sequences. Jpn. J. Gen. Plant Pathol. 68:307-320.
26. O'Donnell, K. 1993. Fusarium and its near relatives. Pages 225-236 in: The Fungal Holomorph: Mitotic, Meiotic, and Pleomorphic Speciation in Fungal Systematics. D. R. Reynolds and J. W. Taylor, eds. CAB International, Wallingford, UK.
27. O'Donnell, K., and Cigelnik, E. 1996. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol. Phylogenet. Evol. 7:103-116.
28. Peres, N. A. R., Souza, N. L., Peever, T. L., and Timmer, L. W. 2004. Benomyl sensitivity of isolates of Colletotrichum acutatum and C. gloeosporioides from citrus. Plant Dis. 88: 125-130.
29. Peres, N. A. R., Timmer, L. W., Adaskaveg, J. E., and Correll, J. C. 2005. Lifestyles of Colletotrichum acutatum. Plant Dis. 89:784-796.
30. Prior, C., Elango, F., and Whitwell, A. 1992. Chemical control of Colletotrichum infection in mangoes. Pages 326-336 in: Colletotrichum-Biology, Pathology, and Control. J. A. Bailey and M. J. Jeger, eds. CAB International, Wallingford, UK.
31. Rambaut, A. 2000. Se-Al: Sequence alignment editor. Department of Zoology, University of Oxford, Oxford, UK.
32. Saitou, N., and Nei, M. 1987, The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
33. Sato, T., Uematsu, S., Iijima, A., and Koganezawa, H. 1998. Occurrence of apple bitter rot by grayish colony form of Colletotrichum acutatum in Japan and pathogenicity to apple fruits of C. acutatum and Glomerella cingulata isolated from other plants. Nippon Kingakukai Kaiho 39:35-44 (In Japanese with English abstr.).
34. Sherriff, C., Whelan, M. J., Arnold, G. M., Lafay, J.-F., Brygoo, Y., and Bailey, J. A. 1994. Ribosomal DNA sequence analysis reveals new species groupings in the genus Colletotrichum. Exp. Mycol. 18:121-138.
35. Sreenivasaprasad, S., Mills, P. R., and Brown, A. E. 1994. Nucleotide sequence of the rDNA spacer 1 enables identification of isolates of Colletotrichum as C. acutatum. Mycol. Res. 98:186-188.
36. Sreenivasaprasad, S., Mills, P. R., Meehan, B. M., and Brown, A. E. 1996. Phytogeny and systematics of 18 Colletotrichum species based on ribosomal DNA spacer sequences. Genome 39:499-512.
37. Sreenivasaprasad, S., Sharda, K., Brown, A. E., and Mills, P. R. 1996. PCR-based detection of Colletotrichum acutatum on strawberry. Plant Pathol. 45:650-655.
38. Sutton, B. C. 1992. The genus Glomerella and its anamorph Colletotrichum. Pages 1-26 in: Colletotrichum-Bioogy, Pathology, and Control. J. A. Bailey and M. J. Jeger, eds. CAB International, Wallingford, UK.
39. Swofford, D. L. 2000. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, MA.
40. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
41. The Phytopathological Society of Japan. 2000. Common Names of Plant Diseases in Japan. Japan Plant Protection Association, Tokyo, Japan. p. 880.
42. Wallen, J. M. 1992. Colletotrichum diseases of perennial and other cash crops. Pages 167-185 in: Colletotrichum-Biology, Pathology, and Control. J. A. Bailey and M. J. Jeger, eds. CAB International, Wallingford, UK.
43. White, T. J., Bruns, T., Lee, S. B., and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pages 315-322 in: PCR Protocols: A Guide to Methods and Applications. M. Gelfand, D. Sninsky, and T. White, eds. Academic Press, San Diego, CA.
44. Yano, K., Ishii, H., Fukaya, M., Kawada, Y., and Sato, T. 2004. Anthracnose on Japanese pear caused by intermediately benzimidazole-resistant strains of Colletotrichum gloeosporioides (Glomerella cingulata). Jpn. J. Phytopathol. 70:314-319 (In Japanese with English abstr.).
45. Yarden, O., and Katan, T. 1993. Mutations leading to substitutions at amino acids 198 and 200 of beta-tubulin that correlate with benomyl-resistance phenotypes of field strains of Botrytis cinerea. Phytopathology 83:1478-1483.