-
1
-
-
3042691747
-
The quinoprotein dehydrogenases for methanol and glucose
-
Anthony, C. (2004) The quinoprotein dehydrogenases for methanol and glucose, Arch. Biochem. Biophys. 428, 2-9.
-
(2004)
Arch. Biochem. Biophys.
, vol.428
, pp. 2-9
-
-
Anthony, C.1
-
2
-
-
1242273667
-
The structure and mechanism of methanol dehydrogenase
-
Anthony, C., and Williams, P. (2003) The structure and mechanism of methanol dehydrogenase, Biochim. Biophys. Acta 1647, 18-23.
-
(2003)
Biochim. Biophys. Acta
, vol.1647
, pp. 18-23
-
-
Anthony, C.1
Williams, P.2
-
3
-
-
0030442943
-
Quinoprotein-catalyzed reactions
-
Anthony, C. (1996) Quinoprotein-catalyzed reactions, Biochem. J. 320, 697-711.
-
(1996)
Biochem. J.
, vol.320
, pp. 697-711
-
-
Anthony, C.1
-
4
-
-
0002788957
-
Methanol dehydrogenase in Gram-negative bacteria
-
(Davidson, V. L., Ed.), Marcel Dekker, New York
-
Anthony, C. (1993) Methanol dehydrogenase in Gram-negative bacteria, in Principles and Applications of Quinoproteins (Davidson, V. L., Ed.) pp 17-45, Marcel Dekker, New York.
-
(1993)
Principles and Applications of Quinoproteins
, pp. 17-45
-
-
Anthony, C.1
-
5
-
-
0003075538
-
The role of quinoproteins in bacterial energy transduction
-
(Davidson, V. L., Ed.), Marcel Dekker, New York
-
Anthony, C. (1993) The role of quinoproteins in bacterial energy transduction, in Principles and Applications of Quinoproteins (Davidson, V. L., Ed.) pp 223-244, Marcel Dekker, New York.
-
(1993)
Principles and Applications of Quinoproteins
, pp. 223-244
-
-
Anthony, C.1
-
8
-
-
0025103905
-
Soluble cytochromes c of methanol-utilizing bacteria
-
Day, D. J., and Anthony, C. (1990) Soluble cytochromes c of methanol-utilizing bacteria, Methods Enzymol. 188, 298-303.
-
(1990)
Methods Enzymol.
, vol.188
, pp. 298-303
-
-
Day, D.J.1
Anthony, C.2
-
10
-
-
0023906632
-
Kinetic and spectral studies on the redox forms of methanol dehydrogenase from Hyphomicrobium X
-
Frank, J. J., Dijkstra, M., Duine, J. A., and Balny, C. (1988) Kinetic and spectral studies on the redox forms of methanol dehydrogenase from Hyphomicrobium X, Eur. J. Biochem. 174, 331-338.
-
(1988)
Eur. J. Biochem.
, vol.174
, pp. 331-338
-
-
Frank, J.J.1
Dijkstra, M.2
Duine, J.A.3
Balny, C.4
-
11
-
-
0032989133
-
H from Methylobacterium extorquens
-
H from Methylobacterium extorquens, Protein Sci. 8, 1232-1240.
-
(1999)
Protein Sci.
, vol.8
, pp. 1232-1240
-
-
Read, J.1
Gill, R.2
Dales, S.L.3
Cooper, J.B.4
Wood, S.P.5
Anthony, C.6
-
12
-
-
0028786424
-
The interaction of methanol dehydrogenase and its cytochrome electron acceptor
-
Dales, S. L., and Anthony, C. (1995) The interaction of methanol dehydrogenase and its cytochrome electron acceptor, Biochem. J. 312, 261-265.
-
(1995)
Biochem. J.
, vol.312
, pp. 261-265
-
-
Dales, S.L.1
Anthony, C.2
-
13
-
-
0026010160
-
L in the acidophilic methylotroph Acetobacter methanolicus
-
L in the acidophilic methylotroph Acetobacter methanolicus, Biochem. J. 280, 139-146.
-
(1991)
Biochem. J.
, vol.280
, pp. 139-146
-
-
Chan, H.T.C.1
Anthony, C.2
-
14
-
-
0029643953
-
The refined structure of the quinoprotein methanol dehydrogenase from Methylobacterium extorquens at 1.94 Å
-
Ghosh, M., Anthony, C., Harlos, K., Goodwin, M. G., and Blake, C. (1995) The refined structure of the quinoprotein methanol dehydrogenase from Methylobacterium extorquens at 1.94 Å, Structure 15, 177-187.
-
(1995)
Structure
, vol.15
, pp. 177-187
-
-
Ghosh, M.1
Anthony, C.2
Harlos, K.3
Goodwin, M.G.4
Blake, C.5
-
15
-
-
0027970374
-
Ionic strength dependence of the reaction between methanol dehydrogenase and cytochrome c-55li: Evidence of conformationally coupled electron transfer
-
Harris, T. K., Davidson, V. L., Chen, L. F., Mathews, F. S., and Xia, Z.-x. (1994) Ionic strength dependence of the reaction between methanol dehydrogenase and cytochrome c-55li: Evidence of conformationally coupled electron transfer, Biochemistry 33, 12600-12608.
-
(1994)
Biochemistry
, vol.33
, pp. 12600-12608
-
-
Harris, T.K.1
Davidson, V.L.2
Chen, L.F.3
Mathews, F.S.4
Xia, Z.-X.5
-
16
-
-
0027759655
-
Binding and electron-transfer reactions between methanol dehydrogenase and its physiologic electron acceptor cytochrome c-55li: A kinetic and thermodynamic analysis
-
Harris, T. K., and Davidson, V. L. (1993) Binding and electron-transfer reactions between methanol dehydrogenase and its physiologic electron acceptor cytochrome c-55li: A kinetic and thermodynamic analysis, Biochemistry 32, 14145-14150.
-
(1993)
Biochemistry
, vol.32
, pp. 14145-14150
-
-
Harris, T.K.1
Davidson, V.L.2
-
17
-
-
20444408140
-
The atomic resolution structure of methanol dehydrogenase from Methylobacterium extorquens
-
Williams, P. A., Coates, L., Mohammed, F., Gill, R., Erskine, P. T., Coker, A., Wood, S. P., Anthony, C., and Cooper, J. B. (2005) The atomic resolution structure of methanol dehydrogenase from Methylobacterium extorquens, Acta Crystallogr. D61, 75-79.
-
(2005)
Acta Crystallogr.
, vol.D61
, pp. 75-79
-
-
Williams, P.A.1
Coates, L.2
Mohammed, F.3
Gill, R.4
Erskine, P.T.5
Coker, A.6
Wood, S.P.7
Anthony, C.8
Cooper, J.B.9
-
18
-
-
0030000290
-
Determination of the gene sequence and the three-dimensional structure at 2.4 Å resolution of methanol dehydrogenase from Methylophilus W3A1
-
Xia, Z.-X., Dai, W.-W., Zhang, Y.-F., White, S. A., Boyd, G. D., and Mathews, F. S. (1996) Determination of the gene sequence and the three-dimensional structure at 2.4 Å resolution of methanol dehydrogenase from Methylophilus W3A1, J. Mol. Biol. 259, 480-501.
-
(1996)
J. Mol. Biol.
, vol.259
, pp. 480-501
-
-
Xia, Z.-X.1
Dai, W.-W.2
Zhang, Y.-F.3
White, S.A.4
Boyd, G.D.5
Mathews, F.S.6
-
19
-
-
0033604837
-
Detailed active site configuration of a new crystal form of methanol dehydrogenase from Methylophilus W3A1 at 1.9 Å resolution
-
Xia, Z.-X., He, Y.-N., Dai, W.-W., White, S. A., Boyd, G. D., and Mathews, F. S. (1999) Detailed active site configuration of a new crystal form of methanol dehydrogenase from Methylophilus W3A1 at 1.9 Å resolution, Biochemistry 38, 1214-1220.
-
(1999)
Biochemistry
, vol.38
, pp. 1214-1220
-
-
Xia, Z.-X.1
He, Y.-N.2
Dai, W.-W.3
White, S.A.4
Boyd, G.D.5
Mathews, F.S.6
-
20
-
-
0344419995
-
X-ray structure of methanol dehydrogenase from Paracoccus denitrificans and molecular modeling of its interactions with cytochrome c-55li
-
Xia, Z.-X., Dai, W.-W., He, Y.-N., White, S. A., Mathews, F. S., and Davidson, V. L. (2003) X-ray structure of methanol dehydrogenase from Paracoccus denitrificans and molecular modeling of its interactions with cytochrome c-55li, J. Biol. Inorg. Chem. 8, 843-854.
-
(2003)
J. Biol. Inorg. Chem.
, vol.8
, pp. 843-854
-
-
Xia, Z.-X.1
Dai, W.-W.2
He, Y.-N.3
White, S.A.4
Mathews, F.S.5
Davidson, V.L.6
-
21
-
-
3042647300
-
Electron transfer in quinoprotems
-
Davidson, V. L. (2004) Electron transfer in quinoprotems, Arch. Biochem. Biophys. 428, 32-40.
-
(2004)
Arch. Biochem. Biophys.
, vol.428
, pp. 32-40
-
-
Davidson, V.L.1
-
22
-
-
0035928721
-
L
-
L, Biochemistry 40, 9799-9809.
-
(2001)
Biochemistry
, vol.40
, pp. 9799-9809
-
-
Afolabi, P.R.1
Mohammed, F.2
Amaratunga, K.3
Majekodunmi, O.4
Dales, S.L.5
Gill, R.6
Thompson, D.7
Cooper, J.B.8
Wood, S.P.9
Goodwin, P.M.10
Anthony, C.11
-
23
-
-
0002889271
-
Iron in heme and related proteins
-
(Bertini, I., Sigel, A., and Sigel, H., Eds.), Marcel Dekker, New York
-
Turano, P., and Lu, Y. (2001) Iron in heme and related proteins, in Handbook on metalloproteins (Bertini, I., Sigel, A., and Sigel, H., Eds.) pp 269-356, Marcel Dekker, New York.
-
(2001)
Handbook on Metalloproteins
, pp. 269-356
-
-
Turano, P.1
Lu, Y.2
-
25
-
-
0037173555
-
Spectroscopic and functional characterization of Cu-containing nitrite reductase from Hyphomicrobium denitrificans A3151
-
Deligeer, Fukunaga, R., Kataoka, K., Yamaguchi, K., Kobayashi, K., Tagawa, S., and Suzuki, S. (2002) Spectroscopic and functional characterization of Cu-containing nitrite reductase from Hyphomicrobium denitrificans A3151, J. Inorg. Biochem. 91, 132-138.
-
(2002)
J. Inorg. Biochem.
, vol.91
, pp. 132-138
-
-
Deligeer1
Fukunaga, R.2
Kataoka, K.3
Yamaguchi, K.4
Kobayashi, K.5
Tagawa, S.6
Suzuki, S.7
-
26
-
-
8444245920
-
Characterization of two type 1 Cu sites of Hyphomicrobium denitrificans nitrite reductase: A new class of copper-containing nitrite reductase
-
Yamaguchi, K., Kataoka, K., Kobayashi, M., Itoh, K., Fukui, A., and Suzuki, S. (2004) Characterization of two type 1 Cu sites of Hyphomicrobium denitrificans nitrite reductase: A new class of copper-containing nitrite reductase, Biochemistry 43, 14180-14188.
-
(2004)
Biochemistry
, vol.43
, pp. 14180-14188
-
-
Yamaguchi, K.1
Kataoka, K.2
Kobayashi, M.3
Itoh, K.4
Fukui, A.5
Suzuki, S.6
-
27
-
-
1342304268
-
Characterization of nitrous oxide reductase from a methylotrophic denitrifying bacterium, Hyphomicrobium denitrificans
-
Yamaguchi, K., Kawamura, A., Ogawa, H., and Suzuki, S. (2003) Characterization of nitrous oxide reductase from a methylotrophic denitrifying bacterium, Hyphomicrobium denitrificans, J. Biochem. 134, 853-858.
-
(2003)
J. Biochem.
, vol.134
, pp. 853-858
-
-
Yamaguchi, K.1
Kawamura, A.2
Ogawa, H.3
Suzuki, S.4
-
28
-
-
3042550174
-
Quinohemoprotein alcohol dehydrogenases: Structure, function, and physiology
-
Toyama, H., Mathews, F. S., Adachi, O., and Matsushita, K. (2004) Quinohemoprotein alcohol dehydrogenases: Structure, function, and physiology, Arch. Biochem. Biophys. 428, 10-21.
-
(2004)
Arch. Biochem. Biophys.
, vol.428
, pp. 10-21
-
-
Toyama, H.1
Mathews, F.S.2
Adachi, O.3
Matsushita, K.4
-
29
-
-
0024270682
-
Nitrate removal from a sewage by supplementation of methanol using a submerged soil column, and changes in the population of methanol-utilizing denitrifiers in the column soil
-
Aida, T., and Nomoto, K. (1988) Nitrate removal from a sewage by supplementation of methanol using a submerged soil column, and changes in the population of methanol-utilizing denitrifiers in the column soil, Jpn. J. Soil Sci. Plant Nutr. 59, 464-470.
-
(1988)
Jpn. J. Soil Sci. Plant Nutr.
, vol.59
, pp. 464-470
-
-
Aida, T.1
Nomoto, K.2
-
30
-
-
26044473961
-
2+-free methanol dehydrogenase from Hyphomicrobium denitrificans A3151
-
2+-free methanol dehydrogenase from Hyphomicrobium denitrificans A3151, Chem. Lett. 34, 1036-1037.
-
(2005)
Chem. Lett.
, vol.34
, pp. 1036-1037
-
-
Nojiri, M.1
Hira, D.2
Yamaguchi, K.3
Okajima, T.4
Tanizawa, K.5
Suzuki, S.6
-
31
-
-
0019003966
-
Studies on methanol dehydrogenase from Hyphomicrobium X
-
Duine, J. A., and Frank, J., Jr. (1980) Studies on methanol dehydrogenase from Hyphomicrobium X, Biochem. J. 187, 213-219.
-
(1980)
Biochem. J.
, vol.187
, pp. 213-219
-
-
Duine, J.A.1
Frank Jr., J.2
-
32
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinnowski, Z., and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinnowski, Z.1
Minor, W.2
-
33
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin, A. A. (1997) MOLREP: An automated program for molecular replacement, J. Appl. Crystallogr. 10, 1022-1025.
-
(1997)
J. Appl. Crystallogr.
, vol.10
, pp. 1022-1025
-
-
Vagin, A.A.1
-
34
-
-
0037779018
-
A graphical user interface to the CCP4 program suite
-
Potterton, E., Briggs, P., Turkerburg, M., and Dodson, E. (2003) A graphical user interface to the CCP4 program suite, Acta Crystallogr. D59, 1131-1137.
-
(2003)
Acta Crystallogr.
, vol.D59
, pp. 1131-1137
-
-
Potterton, E.1
Briggs, P.2
Turkerburg, M.3
Dodson, E.4
-
35
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. N., Gross, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography & NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr. D54, 905-921.
-
(1998)
Acta Crystallogr.
, vol.D54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.N.4
Gross, M.5
Pannu, N.S.6
Read, R.J.7
Rice, L.M.8
Simonson, T.9
Warren, G.L.10
-
36
-
-
0032790081
-
XtalView/Xfit: A versatile program for manipulating atomic coordinates and electron density
-
McRee, D. E. (1999) XtalView/Xfit: A versatile program for manipulating atomic coordinates and electron density, J. Struct. Biol. 125, 156-165.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
37
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov, G. N., Vagin, A. A., and Dodson, E. D. (1997) Refinement of macromolecular structures by the maximum-likelihood method, Acta Crystallogr. D53, 240-255.
-
(1997)
Acta Crystallogr.
, vol.D53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.D.3
-
38
-
-
0036468385
-
Prediction of protein-protein interactions by docking methods
-
Smith, G. R., and Sternberg, M. J. E. (2002) Prediction of protein-protein interactions by docking methods, Curr. Opin. Struct. Biol. 12, 28-35.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 28-35
-
-
Smith, G.R.1
Sternberg, M.J.E.2
-
39
-
-
0038021428
-
Evaluation of the 3D-Dock protein docking suite in rounds 1 and 2 of the CAPRI blind trial
-
Smith, G. R., and Sternberg, M. J. E. (2003) Evaluation of the 3D-Dock protein docking suite in rounds 1 and 2 of the CAPRI blind trial, Proteins 52, 74-79.
-
(2003)
Proteins
, vol.52
, pp. 74-79
-
-
Smith, G.R.1
Sternberg, M.J.E.2
-
40
-
-
0031565730
-
Modeling protein docking using shape complementarity, electrostatics and biochemical information
-
Gabb, H. A., Jackson, R. M., and Sternberg, M. J. E. (1997) Modeling protein docking using shape complementarity, electrostatics and biochemical information, J. Mol. Biol. 272, 106-120.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 106-120
-
-
Gabb, H.A.1
Jackson, R.M.2
Sternberg, M.J.E.3
-
41
-
-
0033562633
-
Use of pair potentials across protein interfaces in screening predicted docked complexes
-
Moont, G., Gabb, H. A., and Sternberg, M. J. E. (1999) Use of pair potentials across protein interfaces in screening predicted docked complexes, Proteins 35, 364-373.
-
(1999)
Proteins
, vol.35
, pp. 364-373
-
-
Moont, G.1
Gabb, H.A.2
Sternberg, M.J.E.3
-
42
-
-
0022004980
-
Electron transfers in chemistry and biology
-
Marcus, R. A., and Sutin, N. (1985) Electron transfers in chemistry and biology, Biochim. Biophys. Acta 811, 265-322.
-
(1985)
Biochim. Biophys. Acta
, vol.811
, pp. 265-322
-
-
Marcus, R.A.1
Sutin, N.2
-
43
-
-
0036533518
-
Protein-protein docking of electron transfer complexes: Cytochrome c oxidase and cytochrome c
-
Flock, D., and Helms, V. (2002) Protein-protein docking of electron transfer complexes: Cytochrome c oxidase and cytochrome c, Proteins 47, 75-85.
-
(2002)
Proteins
, vol.47
, pp. 75-85
-
-
Flock, D.1
Helms, V.2
-
44
-
-
18844413338
-
How does nitrous oxide reductase interact with its electron donors? A docking study
-
Mattila, K., and Haltia, T. (2005) How does nitrous oxide reductase interact with its electron donors? A docking study, Proteins 59, 708-722.
-
(2005)
Proteins
, vol.59
, pp. 708-722
-
-
Mattila, K.1
Haltia, T.2
-
45
-
-
0019518516
-
Methanol dehydrogenase of Methylomonas J: Purification, crystallization, and some properties
-
Ohta, S., Fujita, T., and Tobari, J. (1981) Methanol dehydrogenase of Methylomonas J: Purification, crystallization, and some properties, J. Biochem. 90, 205-213.
-
(1981)
J. Biochem.
, vol.90
, pp. 205-213
-
-
Ohta, S.1
Fujita, T.2
Tobari, J.3
-
46
-
-
0026460168
-
Characterization of mutants of the quinoprotein methanol dehydrogenase lacking an essential calcium ion
-
Richardson, I. W., and Anthony, C. (1992) Characterization of mutants of the quinoprotein methanol dehydrogenase lacking an essential calcium ion, Biochem. J. 287, 709-715.
-
(1992)
Biochem. J.
, vol.287
, pp. 709-715
-
-
Richardson, I.W.1
Anthony, C.2
-
47
-
-
0025123437
-
Methanol dehydrogenase from Hyphomicrobium X
-
Frank, J., and Duine, J. A. (1990) Methanol dehydrogenase from Hyphomicrobium X, Methods Enzymol. 188, 202-209.
-
(1990)
Methods Enzymol.
, vol.188
, pp. 202-209
-
-
Frank, J.1
Duine, J.A.2
-
48
-
-
0028334063
-
Replacement of enzyme-bound calcium with strontium alters the kinetic properties of methanol dehydrogenase
-
Harris, T. K., and Davidson, V. L. (1994) Replacement of enzyme-bound calcium with strontium alters the kinetic properties of methanol dehydrogenase, Biochem. J. 300, 175-182.
-
(1994)
Biochem. J.
, vol.300
, pp. 175-182
-
-
Harris, T.K.1
Davidson, V.L.2
-
49
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and Sander, C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features, Biopolymers 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
51
-
-
0027440362
-
Protein structure comparison by alignment of distance matrices
-
Holm, L., and Sander, C. (1993) Protein structure comparison by alignment of distance matrices, J. Mol. Biol. 223, 123-138.
-
(1993)
J. Mol. Biol.
, vol.223
, pp. 123-138
-
-
Holm, L.1
Sander, C.2
|