Localization of S genes on extended DNA Fibers (EDFs) in Brassica oleracea by high-resolution FISH

Acta Genetica Sinica

Volumn 33, Issue 3, 2006, Pages 277-283

  Yang, Kun ^a   Qi, Hong Yan ^a   Zhu, Li Quan ^a   Wang, Xiao Jia ^a  

^a SOUTHWEST UNIVERSITY   (China)

Author keywords

EDF FISH; Localization of S genes; Preparation of EDFs; Quantitatively analyze mapping; Receding interface; S locus; Spatial resolution

Indexed keywords

ARTICLE; CABBAGE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LOCATION; GENE LOCUS; GENE MAPPING;

BRASSICA; BRASSICA OLERACEA; BRASSICA OLERACEA VAR. CAPITATA;

EID: 33645121426     PISSN: 03794172     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0379-4172(06)60051-6     Document Type: Article

References (32)

1. Snowdon R J, Friedt W, Köhler A , Köhler W. Molecular cytogenetic localisation and characterisation of 5S and 25S rDNA loci for chromosome identification in oilseed rape (Brassica napus L.). Ann Bot, 2000, 86: 201-204.
2. Khrustaleva L I, Kik C. Localization of single-copy T-DNA insertion in transgenic shallots (Allium cepa) by using ultra-sensitive FISH with tyramide signal amplification. The Plant Journal, 2001, (25)6: 699-706.
3. Snowdon R J, Köhler A, Köhler W , Friedt W. FISH-ing for new rapeseed lines: the application of molecular cytogenetic techniques to Brassica breeding. In: "New Horizons for an old Crop" Proceedings of the International Rapeseed Congress. Canberra, Austrialia, 1999.
4. Chen Shuang-Yan, Jin Wei-Zheng, Wang Ming-Yi, Zhang Fan, Zhou Jie, Jia Qiao-Jun, Wu Yun-Rong, Liu Fei-Yan, Wu Ping. Distribution and characterization of over 1000 T-DNA tags in rice genome. The Plant Journal, 2003, 36: 105-113.
5. Voss A, Lühs W, Snowdon R J, Friedt W. Development and molecular characterization of nematode-resistant rapeseed (Brassica napus L.). In: Scarascia-Mugnozza G T, Porceddu E, Pagnotta M A, eds. Genetics and breeding for crop quality and resistance. Kluwer Academic Publishers, Netherlands, 1999, 195-202.
6. Jiang J, Gill B S. Nonisotopic in situ hybridization and plant genome mapping: the first 10 years. Genome, 1994, 37: 717-725.
7. De Jong H J, Fransz P, Zabel P. High-resolution FISH in plants - techniques and applications. Trends Plant Sci, 1999, 4: 258-263.
8. Lichter P, Tang C J, Call K, Hermanson G, Evans G A, Housman D, Ward D C. High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science, 1990, 247: 65-69.
9. Heng H H Q, Squire J, Tsui L C. High-resolution mapping of mammalian genes by in situ hybridization to free chromatin. Proc Natl Acad Sci USA, 1992, 89: 9509-9513.
10. Lawance J B, Singer R H, McNeil J A. Interphase and metaphase resolution of different distances with the human dystrophin gene. Science, 1990, 249: 928-932.
11. Monier K, Michalet X, Lamartine J, Schurra C, Heitzmann F, Yin L, Cinti R, Sylla B S, Creaven M, Porta G, Vourc'h C, Robert-Nicoud M, Bensimon A, Rome M. High-resolution mapping of the X-linked lymphoproliferative syndrome region by FISH on combed DNA. Cytogenet Cell Genet, 1998, 81: 259-264.
12. Bensimon A, Simon A, Chiffaudel A, Croquette V, Heslot F, Bensimon D. Alignment and sensitive detection of DNA by a moving interface. Science. 1994, 265(5181): 2096-2098.
13. Fransz P F, Alonso-Blanco C, Liharska T B, Peeters A J M, Zbel P, de Jong J H. High-resolution physical mapping in Arobidopsis thaliana and tomato by fluorescence in situ hybridization to extended DNA fibers. Plant Journal, 1996, 9: 421-430.
14. Fransz P, de Jong J H, Endo T R. Preparation of extended DNA fibers for high-resolution mapping by fluorescence in situ hybridization (FISH). Plant Mol Biol Man, G5: 1-18.
15. Zhong Xiao-Bo, Fransz P F, Wennekes J, van Kammen A, de Jong J H, Zabe P. Fluorescence in situ hybridization to pachytene chromosomes and extended DNA fibres in plants. Acta Genetica Sinica, 1998, 25(2): 142-149(in Chinese with an English abstract).
16. Ohmido N, Kijima K, Hirose T, de Jong H, Fukui K. Recent advances in the physical mapping of genes by fluorescence in situ hybridization (FISH) of rice. Application Note, February, 1999.
17. Valárik M, BartoŠ J, Kovářová P, Kubaláková M, de Jong J H , Doležel J. High-resolution FISH on super-stretched flow-sorted plant chromosomes. The Plant Journal, 2004, 37: 940-950.
18. ZHU Li-Quan, WANG Xiao-Jia. Rapid identification of self-incompatibility and S-alleles of cabbage by the polymorphism of S locus. Acta Botanica Sinca, 2000, 42(6): 595-599(in Chinese with an English abstract).
19. Ohmido N, Fukui K. Visual verification of close disposition between rice A genome-specific DNA sequence (TrsA) and the tolemere sequence. Plant Mol Biol, 1997, 35: 963-968.
20. Kamisugi Y, Nakayama S, O'Neil C M, Mathias R J, Trick M, Fukui K. Visualization of the Brassica self-incompatibility S-locus on identified oilseed rape chromosomes. Plant Molecular Biology, 1998, 38: 1081-1087.
21. Snowdon R J, Köhler W , Köhler A. Chromosomal localization and characterization of rDNA loci in the Brassica A and C genomes. Genome, 1997, 40: 582-587.
22. Piotr A, Ziolkowski P A, Sadowski J. FISH-mapping of rDNAs and Arabidopsis BACs on pachytene complements of selected Brassicas. Genome. 2002, 45: 189-197.
23. Wanner G, Formanek H. A new chromosome model. J Struct Biol, 2000, 132: 147-161.
24. Wang X H, Luo Peng. Studies on the karyotypes and C-banding partterns of Chinese kale (Brassica albolabra) and cabbage (B. oleracea var. capitata). Acta Botanica Sinica, 1987, 29(2): 149-155(in Chinese with an English abstract).
25. Arumuganathan K, Earle E D. Nuclear DNA content of some important plant species. Plant Mol Biol Rep, 1991, 9: 208-219.
26. Elizabeth S. Microscope. Grolier Multimedia Encyclopedia Online. Grolier, 1998.
27. Wang Jin-Fa, eds. Cytobiology. Beijing: Science Press, 2003, 30-34(in Chinese).
28. Boyes D C, Nasrallah J B. Physical linkage of the SLG and SRK genes at the self-incompatibility locus of Brassica oleracea. Mol Gen Genet, 1993, 256: 369-373.
29. Schopfer C R, Nasrallah M E, Nasrallah J B. The male determinant of self-incompatibility in Brassica. Science 1999, 286: 1697-1700.
30. Takayama S, Shiba H, Iwano M, Shimosato H, Che F C, Kai N, Watanabe M, Iwano M, Isogai A. The pollen determinant of self-incompatibility in Brassica campestris. Proc Natl Acad Sci USA, 2000, 97: 1920-1925.
31. Michalet X, Ekong R, Fougerousse F, Rousseaux S, Schurra C, Hornigold N, van Slegtenhorst M, Wolfe J, Povey S, Beckmann J S, Bensimon A. Dynamic molecular combing: stretching the whole human genome for high-resolution studies. Science, 1997, 277: 1518-1523.
32. Wang Mei, Thomas D, Gray J W, Heinz-Ulrich G W. High sensitivity, high resolution physical mapping by fluorescence in situ hybridization on to individual straightened DNA molecules. Bioimaging, 1996, 4: 73-83.