Phylogeography, phylogeny and hybridization in trichechid sirenians: Implications for manatee conservation

Molecular Ecology

Volumn 15, Issue 2, 2006, Pages 433-447

  Vianna, Juliana A ^a   Bonde, Robert K ^b   Caballero, Susana ^c,d   Giraldo, Juan Pablo ^d   Lima, Régis P ^e   Clark, Annmarie ^f   Marmontel, Míriam ^g   Morales Vela, Benjamín ^h   De Souza, Maria José ⁱ   Parr, Leslee ^j   Rodríguez Lopez, Marta A ^k   Mignucci Giannoni, Antonio A ^l   Powell, James A ^m   Santos, Fabrício R ^a  

^a FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^b U S GEOLOGICAL SURVEY   (United States)

^c UNIVERSITY OF AUCKLAND   (New Zealand)

^d Programa de Conservación y Manejo de los Armadillos de los Llanos Orientales Oleoducto de los Llanos Orientales ODL   (Colombia)

^e IBAMA   (Brazil)

^f UNIVERSITY OF FLORIDA   (United States)

^g INSTITUTO DE DESENVOLVIMENTO SUSTENTÁVEL MAMIRAUÁ   (Brazil)

^h EL COLEGIO DE LA FRONTERA SUR   (Mexico)

ⁱ FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^j SAN JOSE STATE UNIVERSITY   (United States)

^k UNIVERSIDAD METROPOLITANA   (Puerto Rico)

^l Caribbean Stranding Network   (Puerto Rico)

^m Wildlife Trust   (United States)

more..

Author keywords

Conservation; Hybridization; Manatees; Phylogeography; Sirenia; Trichechus

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; ENVIRONMENTAL PROTECTION; GENETIC VARIABILITY; GENETICS; HYBRIDIZATION; PHYLOGENY; POPULATION GENETICS; SPECIES DIFFERENCE; TRICHECHUS;

ANIMALS; CONSERVATION OF NATURAL RESOURCES; DNA, MITOCHONDRIAL; GENETICS, POPULATION; HYBRIDIZATION, GENETIC; MICROSATELLITE REPEATS; PHYLOGENY; SPECIES SPECIFICITY; TRICHECHUS; VARIATION (GENETICS);

SIRENIA; TRICHECHIDAE; TRICHECHUS; TRICHECHUS INUNGUIS; TRICHECHUS MANATUS; TRICHECHUS SENEGALENSIS;

EID: 33645065123     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02771.x     Document Type: Article

References (49)

1. Allendorf FW Leary RF Spruell P Wenburg JK 2001 The problems with hybrids: setting conservation guidelines Trends in Ecology & Evolution 16 613 622
2. Assis MFL Best RC Barros RMS Yonenaga-Yassuda Y 1988 Cytogenetic study of Trichechus inunguis (Amazonian manatee) Revista Brasileira de Genetica 11 41 50
3. Bandelt H-J Forster P Röhl A 1999 Median-joining networks for inferring intraspecific phylogenies Molecular Biology and Evolution 16 37 48
4. Beck CA Barros NB 1991 The impact of debris on the Florida manatee Marine Pollution Bulletin 22 508 510
5. Best RC 1982 A salvação de uma espécie: novas perspectivas para o peixe-boi da Amazônia Revista IBM 14 9
6. Bossart GD Baden DG Ewing RY Roberts B Wright SD 1998 Brevetoxicosis in manatees (Trichechus manatus latirostris) from the 1996 epizootic: gross, histologic, and immunohistochemical features Toxicological Pathology 26 276 282
7. Bossart GD Meisner RA Rommel SA Ghim S-J Jenson AB 2003 Pathological features of the Florida manatee cold stress syndrome Aquatic Mammals 29 9 17
8. Cantanhede AM Silva VM Farias IP Hrbek T Lazzarini SM Alves-Gomes J 2005 Phylogeography and population genetics of the endangered Amazonian manatee, Trichechus inunguis, Natterer, 1883 (Mammalia, Sirenia) Molecular Ecology 14 401 413
9. Colman SM Mixon RB 1988 The record of major Quaternary sea-level changes in a large coastal plain estuary, Chesapeake Bay, eastern United States Palaeogeography, Palaeoclimatology, and Palaeoecology 68 99 116
10. de Thoisy B Spiegelberger T Rousseau S Talvy G Vogel I Vié JC 2003 Distribution, habitat, and conservation status of the West Indian manatee Trichechus manatus in French Guiana Oryx 37 431 436
11. Domning DP 1994 A Phylogenetic analysis of the Sirenia In Contributions in Marine Mammal Paleontology Honoring (eds Whitmore FC Jr. Berta A Deméré TA Proceedings of San Diego Society of Natural History 29 177 189
12. Domning DP Hayek L 1986 Interspecific and intraspecific morphological variation in manatees (Sirenia: Trichechidae) Marine Mammal Science 2 87 141
13. Dupanloup I Schneider S Excoffier L 2002 A simulated annealing approach to define the genetic structure of populations Molecular Ecology 11 2571 2581
14. Ewing B Green P 1998 Basecalling of automated sequencer traces using phred II. Error probabilities Genome Research 8 186 194
15. Excoffier L Smouse P Quattro J 1992 Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data Genetics 131 479 491
16. Garcia-Rodriguez AI Bowen BW Domning D et al. 1998 Phylogeography of the West Indian manatee (Trichechus manatus): how many populations and how many taxa? Molecular Ecology 7 1137 1149
17. Garcia-Rodriguez AI Moraga-Amador D Farmerie W McGuire P King TL 2000 Isolation and characterization of microsatellite DNA markers in the Florida manatee (Trichechus manatus latirostris) and their application in selected sirenian species Molecular Ecology 9 2161 2163
18. Gordon D Abajian C Green P 1998 consed: a graphical tool for sequence finishing Genome Research 8 195 202
19. Gray B Zori R McGuire P Felton S Bonde R 2002 A first generation cytogenetic ideogram for the Florida manatee (Trichechus manatus latirostris) based on multiple chromosome banding techniques Hereditas 137 215 223
20. Guilderson TP Fairbanks RG Rubenstone JL 1994 Tropical temperature variations since 20 000 years ago: modulating interhemispheric climatic change Science 263 663 665
21. Holland MM Cave CA Holland CA Bille TW 2003 Development of a quality, high throughput DNA analysis procedure for skeletal samples to assist with the identification of victims from the World Trade Center attacks Croatian Medical Journal 44 264 272
22. IBAMA 2001 Plano de Ação de Mamíferos Aquáticos do Brasil Versão II Ministério do Meio Ambiente, Instituto Brasileiro do Meio Ambiente e dos Recursos Naturais Renováveis Brasília
23. Kleinschmidt A 1982 Wissens ubre die saugerordnung der seekuhe (Sirenia) unter besonderer Berucksichtigung der Stellerschen Riesenseekuh Rhytina gigas (Zimmerman, 1780) sowie iohre hochgradige Anpassung an das Wasserleben im Vergleich zu den Walen Braunschweiger Naturkundliche Schrifen 1 367 418
24. Kocher TD Thomas WK Meyer A et al. 1989 Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers Proceedings of the National Academy of Sciences, USA 86 6196 6200
25. Kumar S Tamura K Nei M 2004 mega 3: integrated software for molecular evolutionary genetics analysis and sequence alignment Briefings in Bioinformatics 5 150 163
26. Lefebvre LW Marmontel M Reid JP Rathbun GB Domning DP 2001 Status and biogeography of the West Indian manatee In Biogeography of the West Indies: Patterns and Perspectives 2nd edn (eds Woods CA Sergile FE CRC Press Boca Raton, Florida
27. Lima RP 1997 Peixe-Boi Marinho (Trichechus manatus): distribuiç ão, status de conservação e aspectos tradicionais ao longo do litoral nordeste do Brasil Master's Degree Dissertation in Oceanography Universidade Federal de Pernambuco, Brazil
28. Luna FO 2001 Distribuição, Status de Conservaçã o e Aspectos Tradicionais do peixe-boi marinho (Trichechus manatus manatus) no litoral norte do Brasil Master's Degree Dissertation in Oceanography Universidade Federal de Pernambuco, Brazil
29. Manni F Guérard E Heyer E 2004 Geographic pattern of (genetic, morphologic, linguistic) variation: how barriers can be detected by 'Monmonier's algorithm' Human Biology 76 173 190
30. Marmontel M Humphrey SR O'Shea TJ 1997 Population viability analysis of the Florida manatee (Trichechus manatus latirostris), 1976-1991 Conservation Biology 11 467 481
31. McClenaghan LRJ O'Shea TJ 1988 Genetic variability in the Florida manatee (Trichechus manatus) Journal of Mammalogy 69 481 488
32. Mignucci-Giannoni AA Montoya-Ospina RA Jiménez-Marrero NM Rodríguez-López MA Williams EH Jr. Bonde RK 2000 Manatee mortality in Puerto Rico Environmental Management 25 189 198
33. Moritz C 1995 Uses of molecular phylogenies for conservation Philosophical Transactions of the Royal Society of LondonSeries B, Biological Sciences 349 113 118
34. Parr LA 2000 The position of Sirenia within the Subungulates and comparison of intra- and inter-specific mitochondrial DNA variation in the extant species of manatee Doctoral Degree Dissertation Portland State University, Portland, Oregon
35. Posada D Crandall KA 1998 modeltest: testing the model of DNA substitution Bioinformatics 14 817 818
36. Ray CE 1960 The manatee in the Lesser Antilles Journal of Mammalogy 41 412 413
37. Rogers AR Harpending H 1992 Population growth makes waves in the distribution of pairwise genetic differences Molecular Biology and Evolution 9 552 569
38. Rozas J Sánchez-DelBarrio JC Messeguer X Rozas R 2003 dnasp, DNA polymorphism analyses by the coalescent and other methods Bioinformatics 19 2496 2497
39. Sambrook J Russell DW Sambrook J 2001 Molecular Cloning: A Laboratory Manual 3rd edn CSHL Press New York
40. Santos FR Bianchi NO Pena SD 1996 Worldwide distribution of human Y-chromosome haplotypes Genome Research 6 601 611
41. Schneider S Roessli D Excoffier L 2000 arlequin, version 2000: A software for population genetics data analysis Genetics and Biometry Laboratory Department of Anthropology University of Geneva Switzerland
42. Slatkin M 1995 Gene flow in natural populations Annual Review of Ecology and Systematics 16 393 430
43. Swofford DL 1998 paup *: Phylogenetic Analysis Using Parsimony (*and Other Methods) version 4 Sinauer Associates Sunderland, Massachusetts
44. Tikel D 1997 Using a genetic approach to optimize Dugong (Dugong dugon) conservation management PhD Thesis James Cook University of North Queensland, Australia
45. Tundisi JG Tundisi TM Rocha O 1999 Ecossistemas de aguas interiores In Águas Doces no Brasil - Capital Ecológico, Uso e Conservação (eds Rebouças AC Braga B Tundisi JG pp 153 192 Escrituras São Paulo
46. von Haeseler A Sajantila A Pääbo S 1996 The genetical archaeology of the human genome Nature Genetics 14 135 140
47. von Humboldt A 1838 Ueber den Manati des Orinoko Wiegmann's Archiv für Naturgeschichte 4 1 10
48. Tuross N 1994 The biochemistry of ancient DNA in bone Experientia 50 530 535
49. Whitehead PJP 1977 The former southern distribution of New World manatees (Trichechus spp.) Biological Journal of the Linnean Society 9 165 189