Sugar and ABA response pathways and the control of gene expression

Plant, Cell and Environment

Volumn 29, Issue 3, 2006, Pages 426-434

  Rook, Fred ^a   Hadingham, Sophie A ^a   Li, Yunhai ^a   Bevan, Michael W ^a  

^a JOHN INNES CENTRE   (United Kingdom)

Author keywords

ABI4; Abscisic acid; ApL3; Starch; Sugar responses

Indexed keywords

ABI4 PROTEIN, ARABIDOPSIS; ABSCISIC ACID; ARABIDOPSIS PROTEIN; TRANSCRIPTION FACTOR;

GENE EXPRESSION;

CARBOHYDRATE METABOLISM; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; LIGHT; METABOLISM; MUTATION; PHOTOSYNTHESIS; PHYSIOLOGY; PLANT; PROMOTER REGION; REVIEW; SIGNAL TRANSDUCTION;

ABSCISIC ACID; ARABIDOPSIS PROTEINS; CARBOHYDRATE METABOLISM; GENE EXPRESSION REGULATION, PLANT; LIGHT; MUTATION; PHOTOSYNTHESIS; PLANTS; PROMOTER REGIONS (GENETICS); PROMOTER REGIONS, GENETIC; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 33645023589     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2005.01477.x     Document Type: Review

References (69)

1. Abe H. Urao T. Ito T. Seki M. Shinozaki K. Yamaguchi-Shinozaki K. 2003 Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling Plant Cell 15 63 78
2. Acevedo-Hernández GJ. León P. Herrera-Estrella LR. 2005 Sugar and ABA responsiveness of a minimal RBCS light-responsive unit is mediated by direct binding of ABI4 Plant Journal 43 506 519
3. Akihiro T. Mizuno K. Fujimura T. 2005 Gene expression of ADP-glucose pyrophosphorylase and starch contents in rice cultured cells are cooperatively regulated by sucrose and ABA Plant Cell Physiology 46 937 946
4. Arenas-Huertero F. Arroyo A. Zhou L. Sheen J. León P. 2000 Analysis of Arabidopsis glucose insensitive mutants, gin5 and gin6, reveals a central role of the plant hormone ABA in the regulation of plant vegetative development by sugar Genes and Development 14 2085 2096
5. Arroyo A. Bossi F. Finkelstein RR. Leon P. 2003 Three genes that affect sugar sensing (Abscisic Acid Insensitive 4, Abscisic Acid Insensitive 5, and Constitutive Triple Response 1) are differentially regulated by glucose in Arabidopsis Plant Physiology 133 231 242
6. Bartholomew DM. Bartley GE. Scolnik PA. 1991 Abscisic-acid control of RBCS and CAB transcription in tomato leaves Plant Physiology 96 291 296
7. Brocard-Gifford IM. Lynch TJ. Finkelstein RR. 2003 Regulatory networks in seeds integrating developmental, abscisic acid, sugar and light signalling Plant Physiology 131 78 92
8. Bussemaker HJ. Li H. Siggia ED. 2001 Regulatory element detection using correlation with expression Nature Genetics 27 167 171
9. Çakir B. Agasse A. Gaillard C. Saumonneau A. Delrot S. Atanassova R. 2003 A grape ASR protein involved in sugar and abscisic acid signaling Plant Cell 15 2165 2180
10. Cernac A. Benning C. 2004 WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis Plant Journal 40 575 585
11. Cheng W-H. Endo A. Zhou L. et al. 2002 A unique short-chain dehydrogenase/reductase in Arabidopsis glucose signalling and abscisic acid biosynthesis and functions Plant Cell 14 2723 2743
12. Dijkwel PP. Huijser C. Weisbeek PJ. Chua N-H. Smeekens SCM. 1997 Sucrose control of phytochrome A signaling in Arabidopsis Plant Cell 9 583 595
13. Finkelstein RR. 1994 Mutations at two new Arabidopsis ABA response loci are similar to the abi3 mutations Plant Journal 5 765 771
14. Finkelstein RR. Wang ML. Lynch TJ. Rao S. Goodman HM. 1998 The Arabidopsis abscisic acid response locus ABI4 encodes an APETALA2 domain protein Plant Cell 10 1043 1054
15. Gibson SI. 2000 Plant sugar-response pathways. Part of a complex regulatory web Plant Physiology 124 1532 1539
16. Gibson SI. Laby RJ. Kim D. 2001 The sugar-insensitive1 (sis1) mutant of Arabidopsis is allelic to ctr1 Biochemical and Biophysical Research Communications 280 196 203
17. Grierson C. Du JS. de Torres Zabala M. Beggs K. Smith C. Holdsworth M. Bevan M. 1994 Separate cis sequences and trans factors direct metabolic and developmental regulation of a potato tuber storage protein gene Plant Journal 5 815 826
18. Hadingham SA. 2004 Sugar-regulation of plant gene expression PhD Thesis University of East Anglia, Norwich, UK.
19. Hudson ME. Quail PH. 2003 Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data Plant Physiology 133 1605 1616
20. Huijser C. Kortstee A. Pego J. Weisbeek P. Wisman E. Smeekens S. 2000 The Arabidopsis SUCROSE UNCOUPLED-6 gene is identical to ABSCISIC ACID INSENSITIVE-4: involvement of abscisic acid in sugar responses Plant Journal 23 577 585
21. Ishiguro S. Nakamura K. 1992 The nuclear factor SP8BF binds to the 5′-upstream regions of three different genes coding for major proteins of sweet potato tuberous roots Plant Molecular Biology 18 97 108
22. Ishiguro S. Nakamura K. 1994 Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5′upstream regions of genes encoding for sporamin and β-amylase from sweet potato Molecular and General Genetics 244 563 571
23. Koch KE. 1996 Carbohydrate-modulated gene expression in plants Annual Review of Plant Physiology and Plant Molecular Biology 47 509 540
24. Krapp A. Hofmann B. Schäfer C. Stitt M. 1993 Regulation of the expression of rbcS and other photosynthetic genes by carbohydrates: a mechanism for the 'sink regulation' of photosynthesis? Plant Journal 3 817 828
25. Laby RJ. Kincaid MS. Kim D. Gibson SI. 2000 The Arabidopsis sugar-insensitive mutants sis4 and sis5 are defective in abscisic acid synthesis and response Plant Journal 23 587 596
26. Li Y. Lee KK. Smith C. Walsh S. Hadingham S. Sorefan K. Cawley G. Bevan MW. 2006 Establishing glucose- and ABA- regulated transcription networks in Arabidopsis by microarray analysis and promoter classification using a relevance vector machine Genome Research in press
27. Lopez-Molina L. Mongrand S. Chua N-H. 2001 A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis Proceedings of the National Academy of Sciences of the USA 98 4782 4787
28. Lu C-A. Lim E-K. Yu S-M. 1998 Sugar response sequence in the promoter of a rice α-amylase gene serves as a transcriptional enhancer Journal of Biological Chemistry 273 10120 10131
29. Lu C-A. Ho T-hD. Ho S-L. Yu S-M. 2002 Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of α-amylase gene expression Plant Cell 14 1963 1980
30. Maeo K. Tomiya T. Hayashi K. Akaike M. Morikami A. Ishiguro S. Nakamura K. 2001 Sugar-responsible elements in the promoter of a gene for β-amylase of sweet potato Plant Molecular Biology 46 627 637
31. min:: LUC1/WRINKLED1 of Arabidopsis thaliana transactivates sugar-inducible promoters Plant Cell Physiology 46 547 556
32. Masaki T. Tsukagoshi H. Mitsui N. Nishii T. Hattori T. Morikami A. Nakamura K. 2005b Activation tagging of a gene for a protein with novel class of CCT-domain activates expression of a subset of sugar-inducible genes in Arabidopsis thaliana Plant Journal 43 142 152
33. Moore B. Zhou L. Rolland F. Hall Q. Cheng W-H. Liu Y-X. Hwang I. Jones T. Sheen J. 2003 Role of the Arabidopsis glucose sensor HXK1 in nutrient, light, and hormonal signalling Science 300 332 336
34. Morikami A. Matsunaga R. Tanaka Y. Suzuki S. Mano S. Nakamura K. 2005 Two cis-acting regulatory elements are involved in the sucrose-inducible expression of the sporamin gene promoter from sweet potato in transgenic tobacco Molecular Genetics and Genomics 272 690 699
35. Niu X. Helentjaris T. Bate NJ. 2002 Maize ABI4 binds Coupling Element1 in abscisic acid and sugar response genes Plant Cell 14 2565 2575
36. van Oosten J-JM. Gerbaud A. Huijser C. Dijkwel PP. Chua N-H. Smeekens SCM. 1997 An Arabidopsis mutant showing reduced feedback inhibition of photosynthesis Plant Journal 12 1011 1020
37. Pelleschi S. Guy S. Kim J-Y. Pointe C. Mahé A. Barthes L. Leonardi A. Prioul J-L. 1999 Ivr2, a candidate gene for a QTL of vacuolar invertase activity in maize leaves. Gene-specific expression under water stress Plant Molecular Biology 39 373 380
38. Pfannschmidt T. 2003 Cloroplast redox signals: how photosynthesis controls its own genes Trends in Plant Science 8 33 41
39. Phillips J. Artsaenko O. Fiedler U. Horstmann C. Mock H-P. Müntz K. Conrad U. 1997 Seed-specific immunomodulation of abscisic acid activity induces a developmental switch EMBO Journal 16 4489 4496
40. Quail PH. 2002 Photosensory perception and signalling in plant cells: new paradigms? Current Opinion in Cell Biology 14 180 188
41. Roitsch T. 1999 Source-sink regulation by sugar and stress Current Opinion in Plant Biology 2 198 206
42. Rolland F. Moore B. Sheen J. 2002 Sugar sensing and signalling in plants Plant Cell S185 S205
43. Rook F. Bevan MW. 2003 Genetic approaches to understanding sugar-response pathways Journal of Experimental Botany 54 495 501
44. Rook F. Gerrits N. Kortstee A. van Kampen M. Borrias M. Weisbeek P. Smeekens S. 1998 Sucrose-specific signalling represses translation of the Arabidopsis ATB2 bZIP transcription factor gene Plant Journal 15 253 263
45. Rook F. Corke F. Card R. Munz G. Smith C. Bevan MW. 2001 Impaired sucrose-induction mutants reveal the modulation of sugar-induced starch biosynthetic gene expression by abscisic acid signalling Plant Journal 26 421 433
46. Sheen J. 1990 Metabolic repression of transcription in higher plants Plant Cell 2 1027 1038
47. Shen Q. Ho T-HD. 1995 Functional dissection of an abscisic acid (ABA) -inducible gene reveals two independent ABA-responsive complexes each containing a G-box and a novel cis-acting element Plant Cell 7 295 307
48. Sheu J-J. Jan S-P. Lee H-T. Yu S-M. 1994 Control of transcription and mRNA turnover as mechanisms of metabolic repression of α-amylase gene expression Plant Journal 5 655 664
49. Smeekens S. 2000 Sugar-induced signal transduction in plants Annual Review of Plant Physiology and Plant Molecular Biology 51 49 81
50. Söderman EM. Brocard IM. Lynch TJ. Finkelstein RR. 2000 Regulation and function of the Arabidopsis ABA-insensitive4 gene in seed and abscisic acid response signaling networks Plant Physiology 124 1752 1765
51. Strand A. 2004 Plastid-to-nucleus signalling Current Opinion in Plant Biology 7 621 625
52. Sun C. Palmqvist S. Olsson H. Borén M. Ahlandsberg S. Jansson C. 2003 A novel WRKY transcription factor, SUSIBA2, participates in sugar signalling in barley by binding to the sugar-responsive elements of the iso1 promoter Plant Cell 15 2076 2092
53. Suzuki M. Ketterling MG. McCarty DR. 2005 Quantitative statistical analysis of cis-regulatory sequences in ABA/VP1- and CBF/DREB1-regulated genes of Arabidopsis Plant Physiology 139 437 447
54. Terzaghi WB. Cashmore AR. 1995 Light-regulated transcription Annual Review of Plant Physiology and Plant Molecular Biology 46 445 474
55. Thompson WF. White MJ. 1991 Physiological and molecular studies of light-regulated nuclear genes in higher plants Annual Review of Plant Physiology and Plant Molecular Biology 42 423 466
56. Tipping ME. 2000 The relevance vector machine Advances in Neural Information Processing Systems 12 652 658
57. Tremousaygue D. Manevski A. Bardet C. Lescure N. Lescure B. 1999 Plant interstitial telomere motifs participate in the control of gene expression in root meristems Plant Journal 20 553 561
58. Trouverie J. Chateau-Joubert S. Thévenot C. Jacquemot M-P. Prioul J-L. 2004 Regulation of vacuolar invertase by abscisic acid or glucose in leaves and roots from maize plantlets Planta 219 894 905
59. Tsukagoshi H. Saijo T. Shibata D. Morikami A. Nakamura K. 2005 Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor Plant Physiology 138 675 685
60. Urwin NAR. Jenkins GI. 1997 A sucrose repression element in the Phaseolus vulgaris rbcS2 gene promoter resembles elements responsible for sugar stimulation of plant and mammalian genes Plant Molecular Biology 35 929 942
61. Vorst O. Kock P. Lever A. Weterings B. Weisbeek P. Smeekens S. 1993 The promoter of the Arabidopsis thaliana plastocyanin gene contains a far upstream enhancer-like element involved in chloroplast-dependent expression Plant Journal 4 933 945
62. Weatherwax SC. Ong MS. Degenhardt J. Bray EA. Tobin EM. 1996 The interaction of light and abscisic acid in the regulation of plant gene expression Plant Physiology 111 363 370
63. Wiese A. Elzinga N. Wobbes B. Smeekens S. 2004 A conserved upstream open reading frame mediates sucrose-induced repression of translation Plant Cell 16 1717 1729
64. Yadav V. Mallappa C. Gangappa SN. Bhatia S. Chattopadhyay S. 2005 A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth Plant Cell 17 1953 1966
65. Yang JC. Zhang JH. Wang ZQ. Zhu QS. Liu LJ. 2003 Involvement of abscisic acid and cytokinins in the senescence and remobilization of carbon reserves in wheat subjected to water stress during grain filling Plant Cell and Environment 26 1621 1631
66. Yazaki J. Shimatani Z. Hashimoto A. et al. 2004 Transcriptional profiling of genes responsive to abscisic acid and gibberellin in rice: phenotyping and comparative analysis between rice and Arabidopsis Physiological Genomics 17 87 100
67. Yoshida KT. Fujiwara T. Naito S. 2002 The synergistic effects of sugar and abscisic acid on myo-inositol-1-phosphate synthase expression Physiologia Plantarum 114 581 587
68. Zhou L. Jang JC. Jones TL. Sheen J. 1998 Glucose and ethylene signal transduction crosstalk revealed by an Arabidopsis glucose-insensitive mutant Proceedings of the National Academy of Sciences of the USA 95 10294 10299
69. Zourelidou M. de Torres-Zabala M. Smith C. Bevan MW. 2002 Storekeeper defines a new class of plant-specific DNA-binding proteins and is a putative regulator of patatin expression Plant Journal 30 489 497