Use of antibiotic resistance analysis for representativeness testing of multiwatershed libraries

Applied and Environmental Microbiology

Volumn 69, Issue 6, 2003, Pages 3399-3405

  Wiggins, Bruce A ^a   Cash, Philip W ^a   Creamer, Wes S ^a   Dart, Scott E ^a   Garcia, Preston P ^a   Gerecke, Todd M ^a   Han, Jennifer ^a   Henry, Brian L ^a   Hoover, Kylie B ^a   Johnson, Erika L ^a   Jones, K C ^a   McCarthy, Jacquie G ^a   McDonough, Justin A ^a   Mercer, Sarah A ^a   Noto, Michael J ^a   Park, Haewon ^a   Phillips, Matthew S ^a   Purner, Stephanie M ^a   Smith, Brian M ^a   Stevens, Erin N ^a   Varner, Amy K ^a   more..

^a JAMES MADISON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTICS; COMPOSITION; WATER POLLUTION; WATERSHEDS;

ANTIBIOTIC RESISTANCE ANALYSIS (ARA);

MICROORGANISMS;

ANTIBIOTICS; FECAL COLIFORM; MICROBIOLOGY; PATHOGEN; WATERSHED;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTAMINATION; DISCRIMINANT ANALYSIS; DNA LIBRARY; EUTROPHICATION; FECES ANALYSIS; HUMAN; HUMAN TISSUE; PULSED FIELD GEL ELECTROPHORESIS; SAMPLING; WATER POLLUTION; WATERSHED MANAGEMENT;

UNITED STATES; VIRGINIA;

ANIMALIA; ARA; BACTERIA (MICROORGANISMS);

EID: 0038316485     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.6.3399-3405.2003     Document Type: Article

References (36)

1. Bernhard, A. E., and K. G. Field. 2000. Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol. 66:1587-1594.
2. Bernhard, A. E., and K. G. Field. 2000. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes coding for 16S rRNA. Appl. Environ. Microbiol. 66:4571-4574.
3. Brion, G. M., and S. Lingireddy. 1999. A neural network approach to identifying non-point sources of microbial contamination. Water Res. 33:3099-3106.
4. Brion, G. M., J. S. Meschke, and M. D. Sobsey. 2002. F-specific RNA coliphages: occurrence, types, and survival in natural waters. Water Res. 36:2419-2425.
5. Butaye, P., L. A. Devriese, and F. Haesebrouck. 2001. Differences in antibiotic resistance patterns of Enterococcus faecalis and Enterococcus faecium strains isolated from farm and pet animals. Antimicrob. Agents Chemother. 45:1374-1378.
6. Carson, A. C., B. L. Shear, M. R. Ellersieck, and A. Asfaw. 2001. Identification of fecal Escherichia coli from humans and animals by ribotyping. Appl. Environ. Microbiol. 67:1503-1507.
7. Dombek, P. E., L. K. Johnson, S. T. Zimmerley, and M. J. Sadowsky. 2000. Use of repetitive DNA sequences and the PCR to differentiate Escherichia coli isolates from human and animal sources. Appl. Environ. Microbiol. 66:2572-2577.
8. Farag, A. M., J. N. Goldstein, D. F. Woodward, and M. Samadpour. 2001. Water quality in three creeks in the backcountry of Grand Teton National Park, USA. J. Freshw. Ecol. 16:135-143.
9. Fujioka, R. S. 2001. Monitoring coastal marine waters for spore-forming bacteria of faecal and soil origin to determine point from non-point source pollution. Water Sci. Technol. 44:181-188.
10. Geornaras, I., J. W. Hastings, and A. von Holy. 2001. Genotypic analysis of Escherichia coli strains from poultry carcasses and their susceptibilities to antimicrobial agents. Appl. Environ. Microbiol. 67:1940-1944.
11. Gordon, D. M. 2001. Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination. Microbiology 147:1079-1085.
12. Graves, A. K., C. Hagedorn, A. Teetor, M. Mahal, A. M. Booth, and R. B. Reneau, Jr. 2002. Antibiotic resistance profiles to determine sources of fecal contamination in a rural Virginia watershed. J. Environ. Qual. 31:1300-1308.
13. Guan, S., R. Xu, S. Chen, J. Odumeru, and C. Gyles. 2002. Development of a procedure for discriminating among Escherichia coli isolates from animal and human sources. Appl. Environ. Microbiol. 68:2690-2698.
14. Hagedorn, C., S. L. Robinson, J. R. Filtz, S. M. Grubbs, T. A. Angier, and R. B. Reneau, Jr. 1999. Determining sources of fecal pollution in a rural Virginia watershed with antibiotic resistance patterns in fecal streptococci. Appl. Environ. Microbiol. 65:5522-5531.
15. Hagedorn, C., J. B. Crozier, K. A. Mentz, A. M. Booth, A. K. Graves, N. J. Nelson, and R. B. Reneau, Jr. 2003. Carbon source utilization profiles as a method to identify sources of fecal pollution in water. J. Appl. Microbiol. 94:792-799.
16. Hartel, P. G., J. D. Summer, J. L. Hill, J. V. Collins, J. A. Entry, and W. I. Segars. 2002. Geographic variability of Escherichia coli ribotypes from animals in Idaho and Georgia. J. Environ. Qual. 31:1273-1278.
17. Harwood, V. J., J. Whitlok, and V. Withington. 2000. Classification of antibiotic resistance patterns of indicator bacteria by discriminant analysis: use in predicting the source of fecal contamination in subtropical waters. Appl. Environ. Microbiol. 66:3698-3704.
18. Jiang, S., R. Noble, and W. Chu. 2001. Human adenoviruses and coliphages in urban runoff-impacted coastal waters of Southern California. Appl. Environ. Microbiol. 67:179-184.
19. Kaspar, C. W., J. L. Burgess, I. T. Knight, and R. R. Colwell. 1990. Antibiotic resistance indexing of Escherichia coli to identify sources of fecal contamination in water. Can. J. Microbiol. 36:891-894.
20. Kern, J., B. Petrauskas, P. McClellan, V. O. Shanholtz, and C. Hagedorn. 2002. Bacterial source tracking: a tool for total maximum daily load development, p. 125-142. In T. Younos (ed.), Advances in water monitoring research. Water Resource Publications, LLC, Highlands Ranch, Colo.
21. Ley, V., J. Higgins, and R. Fayer. 2002. Bovine enteroviruses as indicators of fecal contamination. Appl. Environ. Microbiol. 68:3455-3461.
22. Parveen, S., N. C. Hodge, R. E. Stall, S. R. Farrah, and M. L. Tamplin. 2001. Genotypic and phenotypic characterization of human and nonhuman Escherichia coli. Water Res. 35:379-386.
23. Parveen, S., R. L. Murphree, L. Edmiston, C. W. Kaspar, K. M. Portier, and M. L. Tamplin. 1997. Association of multiple-antibiotic-resistance profiles with point and nonpoint sources of Escherichia coli in Apalachicola Bay. Appl. Environ. Microbiol. 63:2607-2612.
24. Parveen, S., K. M. Portier, K. Robinson, L. Edmiston, and M. L. Tamplin. 1999. Discriminant analysis of ribotype profiles of Escherichia coli for differentiating human and nonhuman sources of fecal pollution. Appl. Environ. Microbiol. 65:3142-3147.
25. Rhodes, M. W., and H. Kator. 1999. Sorbitol-fermenting bifidobacteria as indicators of diffuse human faecal pollution in estuarine watersheds. J. Appl. Microbiol. 87:528-535.
26. Schaper, M., and J. Jofre. 2000. Comparison of methods for detecting genotypes of F-specific RNA bacteriophages and fingerprinting the origin of faecal pollution in water samples. J. Virol. Methods 89:1-10.
27. Scott, T. M., J. B. Rose, T. M. Jenkins, S. R. Farrah, and J. Lukasik. 2002. Microbial source tracking: current methodology and future directions. Appl. Environ. Microbiol. 68:5796-5803.
28. Simmons, G. M., Jr., S. A. Herbein, and C. M. James. 1995. Managing nonpoint fecal coliform sources to tidal inlets. Water Resour. Update 100:64-74.
29. Simmons, G. M., Jr., D. F. Waye, S. Herbein, S. Myers, and E. Walker. 2002. Estimating nonpoint source fecal coliform sources using DNA profile analysis, p. 143-168. In T. Younos (ed.), Advances in water monitoring research. Water Resources Publications, LLC, Denver, Colo.
30. Simpson, J. M., J. W. Santo Domingo, and D. J. Reasoner. 2002. Microbial source tracking: state of the science. Environ. Sci. Technol. 36:5279-5288.
31. Vancanneyt, M., A. Lombardi, C. Andrighetto, E. Knijff, S. Torriani, K. J. Björkroth, C. M. A. P. Franz, M. R. Foulquié Moreno, H. Revets, L. De Vuyst, J. Swings, K. Kersters, F. Dellaglio, and W. H. Holzapfel. 2002. Intraspecies genomic groups in Enterococcus faecium and their correlation with origin and pathogenicity. Appl. Environ. Microbiol. 68:1381-1391.
32. Wheeler, A. L., P. G. Hartel, D. G. Godfrey, J. L. Hill, and W. I. Segars. 2002. Potential of Enterococcus faecalis as a human fecal indicator for microbial source tracking. J. Environ. Qual. 31:1286-1293.
33. Whitlock, J. E., D. T. Jones, and V. J. Harwood. 2002. Identification of the sources of fecal coliforms in an urban watershed using antibiotic resistance analysis. Water Res. 36:4273-4282.
34. Wiggins, B. A. 1996. Discriminant analysis of antibiotic resistance patterns in fecal streptococci, a method to differentiate human and animal sources of fecal pollution in natural waters. Appl. Environ. Microbiol. 62:3997-4002.
35. Wiggins, B. A., R. W. Andrews, R. A. Conway, C. L. Corr, E. J. Dobratz, D. P. Dougherty, J. R. Eppard, S. R. Knupp, M. C. Limjoco, J. M. Mettenburg, J. M. Rinehardt, J. Sonsino, R. L. Torrijos, and M. E. Zimmerman. 1999. Use of antibiotic resistance analysis to identify nonpoint sources of fecal pollution. Appl. Environ. Microbiol. 65:3483-3486.
36. Zoetendal, E. G., A. von Wright, T. Vilpponen-Salmela, K. Ben-Amor, A. D. L. Akkermans, and W. M. de Vos. 2002. Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl. Environ. Microbiol. 68:3401-3407.