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Volumn 8, Issue 1, 2006, Pages 156-164

Stable carbon isotope fractionation during degradation of dichloromethane by methylotrophic bacteria

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; CHLORIDE; DICHLOROMETHANE; DICHLOROMETHANE DEHALOGENASE; LYASE; NITRATE; NITRITE;

EID: 33644944480     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2005.00878.x     Document Type: Article
Times cited : (33)

References (39)
  • 1
    • 33644933004 scopus 로고    scopus 로고
    • Dichloromethane Chapter 5.7
    • Anonymous. World Health Organization, Regional Office for Europe. Copenhagen
    • Anonymous 2000 Dichloromethane Chapter 5.7 Air Quality Guidelines for Europe Copenhagen World Health Organization, Regional Office for Europe.
    • (2000) Air Quality Guidelines for Europe
  • 2
    • 0028243804 scopus 로고
    • Isolation and characterization of the Methylophilus sp. strain DM11 gene encoding dichloromethane dehalogenase/glutathione S-transferase
    • Bader R. Leisinger T. 1994 Isolation and characterization of the Methylophilus sp. strain DM11 gene encoding dichloromethane dehalogenase/ glutathione S-transferase J Bacteriol 176 3466 3473
    • (1994) J Bacteriol , vol.176 , pp. 3466-3473
    • Bader, R.1    Leisinger, T.2
  • 3
    • 0036206048 scopus 로고    scopus 로고
    • Carbon isotope fractionation during aerobic biodegradation of trichloroethene by Burkholderia cepacia G4: A tool to map degradation mechanisms
    • Barth JAC. Slater G. Schuth C. Bill M. Downey A. Larkin M. Kalin RM. 2002 Carbon isotope fractionation during aerobic biodegradation of trichloroethene by Burkholderia cepacia G4: a tool to map degradation mechanisms Appl Environ Microbiol 68 1728 1734
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1728-1734
    • Barth, J.A.C.1    Slater, G.2    Schuth, C.3    Bill, M.4    Downey, A.5    Larkin, M.6    Kalin, R.M.7
  • 4
    • 0034233973 scopus 로고    scopus 로고
    • Carbon isotope fractionation during microbial dechlorination of trichloroethene, cis-dichloroethene, and vinyl chloride: Implications for assessment of natural attenuation
    • Bloom Y. Aravena R. Hunkeler D. Edwards E. Frape SK. 2000 Carbon isotope fractionation during microbial dechlorination of trichloroethene, cis-dichloroethene, and vinyl chloride: implications for assessment of natural attenuation Environ Sci Technol 34 2768 2772
    • (2000) Environ Sci Technol , vol.34 , pp. 2768-2772
    • Bloom, Y.1    Aravena, R.2    Hunkeler, D.3    Edwards, E.4    Frape, S.K.5
  • 5
    • 0035025211 scopus 로고    scopus 로고
    • Methane oxidation in two Swedish landfill covers measured with carbon-13 to carbon-12 isotope ratios
    • Borjesson G. Chanton J. Svensson BH. 2001 Methane oxidation in two Swedish landfill covers measured with carbon-13 to carbon-12 isotope ratios J Environ Qual 30 369 376
    • (2001) J Environ Qual , vol.30 , pp. 369-376
    • Borjesson, G.1    Chanton, J.2    Svensson, B.H.3
  • 6
    • 0035944484 scopus 로고    scopus 로고
    • Unmasking of deuterium kinetic isotope effects on the methane monooxygenase compound Q reaction by site-directed mutagenesis of component B
    • Brazeau BJ. Wallar BJ. Lipscomb JD. 2001 Unmasking of deuterium kinetic isotope effects on the methane monooxygenase compound Q reaction by site-directed mutagenesis of component B J Am Chem Soc 123 10421 10422
    • (2001) J Am Chem Soc , vol.123 , pp. 10421-10422
    • Brazeau, B.J.1    Wallar, B.J.2    Lipscomb, J.D.3
  • 8
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. 1988 Multiple sequence alignment with hierarchical clustering Nucleic Acids Res 16 10881 10890
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 9
    • 33644942713 scopus 로고
    • Isolation and characterization of a new facultatively methylotrophic bacterium: Description of Methylorhabdus multivorans, gen. nov., sp. nov
    • Doronina NV. Braus-Stromeyer SA. Tourova TP. Kuznetzov BB. Leisinger T. 1995 Isolation and characterization of a new facultatively methylotrophic bacterium: description of Methylorhabdus multivorans, gen. nov., sp. nov Syst Appl Microbiol 23 210 218
    • (1995) Syst Appl Microbiol , vol.23 , pp. 210-218
    • Doronina, N.V.1    Braus-Stromeyer, S.A.2    Tourova, T.P.3    Kuznetzov, B.B.4    Leisinger, T.5
  • 10
    • 0033923247 scopus 로고    scopus 로고
    • Methylopila helvetica sp. nov. and Methylobacterium dichloromethanicum sp. nov. - Novel aerobic facultatively methylotrophic bacteria utilizing dichloromethane
    • Doronina NV. Trotsenko YA. Tourova TP. Kuznetsov BB. Leisinger T. 2000 Methylopila helvetica sp. nov. and Methylobacterium dichloromethanicum sp. nov. - Novel aerobic facultatively methylotrophic bacteria utilizing dichloromethane Syst Appl Microbiol 23 210 218
    • (2000) Syst Appl Microbiol , vol.23 , pp. 210-218
    • Doronina, N.V.1    Trotsenko, Y.A.2    Tourova, T.P.3    Kuznetsov, B.B.4    Leisinger, T.5
  • 11
    • 0002882114 scopus 로고
    • Heavy atom isotope effects in organic reaction studies
    • . In. Van Nostrand Reinhold New York, NY, USA , pp.
    • Fry A. 1970 Heavy atom isotope effects in organic reaction studies. In Isotope Effects in Chemical Reactions Collins J. Bowman NS. (eds) New York, NY, USA Van Nostrand Reinhold, pp. 364 414
    • (1970) Isotope Effects in Chemical Reactions*Collins J.*Bowman N.S. (Eds) , pp. 364-414
    • Fry, A.1
  • 12
    • 0347004454 scopus 로고    scopus 로고
    • Combined application of stable carbon isotope analysis and specific metabolites determination for assessing in situ degradation of aromatic hydrocarbons in a tar oil-contaminated aquifer
    • Griebler C. Safinowski M. Vieth A. Richnow HH. Meckenstock RU. 2004a Combined application of stable carbon isotope analysis and specific metabolites determination for assessing in situ degradation of aromatic hydrocarbons in a tar oil-contaminated aquifer Environ Sci Technol 38 617 631
    • (2004) Environ Sci Technol , vol.38 , pp. 617-631
    • Griebler, C.1    Safinowski, M.2    Vieth, A.3    Richnow, H.H.4    Meckenstock, R.U.5
  • 13
    • 2442551474 scopus 로고    scopus 로고
    • Stable carbon isotope fractionation during aerobic and anaerobic transformation of trichlorobenzene
    • Griebler C. Adrian L. Meckenstock RU. Richnow HH. 2004b Stable carbon isotope fractionation during aerobic and anaerobic transformation of trichlorobenzene FEMS Microbiol Ecol 48 313 321
    • (2004) FEMS Microbiol Ecol , vol.48 , pp. 313-321
    • Griebler, C.1    Adrian, L.2    Meckenstock, R.U.3    Richnow, H.H.4
  • 14
    • 0032843383 scopus 로고    scopus 로고
    • Isotopic fractionation of carbon and chlorine by microbial degradation of dichloromethane
    • Heraty LJ. Fuller ME. Huang L. Abrajano T. Sturchio NC. 1999 Isotopic fractionation of carbon and chlorine by microbial degradation of dichloromethane Org Geochem 30 793 799
    • (1999) Org Geochem , vol.30 , pp. 793-799
    • Heraty, L.J.1    Fuller, M.E.2    Huang, L.3    Abrajano, T.4    Sturchio, N.C.5
  • 15
    • 0034215052 scopus 로고    scopus 로고
    • Determination of compound-specific carbon isotope ratios of chlorinated methanes, ethanes, and ethenes in aqueous samples
    • Hunkeler D. Aravena R. 2000 Determination of compound-specific carbon isotope ratios of chlorinated methanes, ethanes, and ethenes in aqueous samples Environ Sci Technol 34 2839 2844
    • (2000) Environ Sci Technol , vol.34 , pp. 2839-2844
    • Hunkeler, D.1    Aravena, R.2
  • 16
    • 0038625074 scopus 로고    scopus 로고
    • Mimicking natural evolution in vitro: An N-acetylneuraminate lyase mutant with an increased dihydrodipicolinate synthase activity
    • Joerger AC. Mayer S. Fersht AR. 2003 Mimicking natural evolution in vitro: an N-acetylneuraminate lyase mutant with an increased dihydrodipicolinate synthase activity Proc Natl Acad Sci USA 100 5694 5699
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 5694-5699
    • Joerger, A.C.1    Mayer, S.2    Fersht, A.R.3
  • 18
    • 0029137037 scopus 로고
    • Dichloromethane as the sole carbon source for Hyphomicrobium sp. strain DM2 under denitrifying conditions
    • Kohler-Staub D. Frank S. Leisinger T. 1995 Dichloromethane as the sole carbon source for Hyphomicrobium sp. strain DM2 under denitrifying conditions Biodegradation 6 229 235
    • (1995) Biodegradation , vol.6 , pp. 229-235
    • Kohler-Staub, D.1    Frank, S.2    Leisinger, T.3
  • 19
    • 0038460793 scopus 로고    scopus 로고
    • Bacterial degradation of dichloromethane in cultures and natural environments
    • Krausova VI. Robb FT. Gonzalez JM. 2003 Bacterial degradation of dichloromethane in cultures and natural environments J Microbiol Methods 54 419 422
    • (2003) J Microbiol Methods , vol.54 , pp. 419-422
    • Krausova, V.I.1    Robb, F.T.2    Gonzalez, J.M.3
  • 20
    • 0030790494 scopus 로고    scopus 로고
    • Non-enzymatic and enzymatic hydrolysis of alkyl halides: A haloalkane dehalogenation enzyme evolved to stabilize the gas-phase transition state of an SN2 displacement reaction
    • Lightstone FC. Zheng YJ. Maulitz AH. Bruice TC. 1997 Non-enzymatic and enzymatic hydrolysis of alkyl halides: a haloalkane dehalogenation enzyme evolved to stabilize the gas-phase transition state of an SN2 displacement reaction Proc Natl Acad Sci USA 94 8417 8420
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 8417-8420
    • Lightstone, F.C.1    Zheng, Y.J.2    Maulitz, A.H.3    Bruice, T.C.4
  • 23
    • 0030910226 scopus 로고    scopus 로고
    • Knowledge-based modeling of a bacterial dichloromethane dehalogenase
    • Marsh A. Ferguson DM. 1997 Knowledge-based modeling of a bacterial dichloromethane dehalogenase Proteins 28 217 226
    • (1997) Proteins , vol.28 , pp. 217-226
    • Marsh, A.1    Ferguson, D.M.2
  • 24
    • 10944244683 scopus 로고    scopus 로고
    • Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated aquifers
    • Meckenstock RU. Morasch B. Griebler C. Richnow HH. 2004 Stable isotope fractionation analysis as a tool to monitor biodegradation in contaminated aquifers J Contam Hydrol 75 215 255
    • (2004) J Contam Hydrol , vol.75 , pp. 215-255
    • Meckenstock, R.U.1    Morasch, B.2    Griebler, C.3    Richnow, H.H.4
  • 26
    • 17544368805 scopus 로고    scopus 로고
    • Degradation of metyl bromide and methyl chloride in soil microcosms: Use of stable C isotope fractionation and stable isotope probing to identify reactions and the responsible microorganisms
    • Miller LG. Warner KL. Baesman SM. Oremland RS. McDonald IR. Radajewski S. Murrell JC. 2004 Degradation of metyl bromide and methyl chloride in soil microcosms: use of stable C isotope fractionation and stable isotope probing to identify reactions and the responsible microorganisms Geochim Cosmochim Acta 68 3271 3283
    • (2004) Geochim Cosmochim Acta , vol.68 , pp. 3271-3283
    • Miller, L.G.1    Warner, K.L.2    Baesman, S.M.3    Oremland, R.S.4    McDonald, I.R.5    Radajewski, S.6    Murrell, J.C.7
  • 27
    • 0035486815 scopus 로고    scopus 로고
    • Stable hydrogen and carbon isotope fractionation during microbial toluene degradation: Mechanistic and environmental aspects
    • Morasch B. Richnow HH. Schink B. Meckenstock RU. 2001 Stable hydrogen and carbon isotope fractionation during microbial toluene degradation: mechanistic and environmental aspects Appl Environ Microbiol 67 4842 4849
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4842-4849
    • Morasch, B.1    Richnow, H.H.2    Schink, B.3    Meckenstock, R.U.4
  • 28
    • 22144480139 scopus 로고    scopus 로고
    • Stable isotope fractionation of tetrachloroethene during reductive dechlorination by Sulfurospirillum multivorans, Desulfitobacterium sp. strain PCE-S and abiotic reactions with cyanocobalamin
    • Nijenhuis I. Andert J. Beck K. Kästner M. Diekert G. Richnow HH. 2005 Stable isotope fractionation of tetrachloroethene during reductive dechlorination by Sulfurospirillum multivorans, Desulfitobacterium sp. strain PCE-S and abiotic reactions with cyanocobalamin Appl Environ Microbiol 71 3413 3419
    • (2005) Appl Environ Microbiol , vol.71 , pp. 3413-3419
    • Nijenhuis, I.1    Andert, J.2    Beck, K.3    Kästner, M.4    Diekert, G.5    Richnow, H.H.6
  • 29
    • 23044489188 scopus 로고    scopus 로고
    • Molecular characterization of dichloromethane-degrading Hyphomicrobium strain using 16S rDNA and DCM dehalogenase gene sequences
    • in press doi:10.1016/syapm.2005.03.011
    • Nikolausz M. Kappelmeyer U. Nijenhuis I. Ziller K. Kästner M. 2005 Molecular characterization of dichloromethane-degrading Hyphomicrobium strain using 16S rDNA and DCM dehalogenase gene sequences Syst Appl Microbiol 28 in press doi:10.1016/syapm.2005.03.011
    • (2005) Syst Appl Microbiol , vol.28
    • Nikolausz, M.1    Kappelmeyer, U.2    Nijenhuis, I.3    Ziller, K.4    Kästner, M.5
  • 30
    • 0017843365 scopus 로고
    • Equilibrium carbon isotope effect on a decarboxylation reaction
    • O'Leary MH. Yapp CJ. 1978 Equilibrium carbon isotope effect on a decarboxylation reaction Biochem Biophys Res Commun 80 155 160
    • (1978) Biochem Biophys Res Commun , vol.80 , pp. 155-160
    • O'Leary, M.H.1    Yapp, C.J.2
  • 32
    • 0018375729 scopus 로고
    • Bioassay for monitoring biochemical methane potential and anaerobic toxicity
    • Owen WF. Stuckey DL. Healy JB. Young LY. McCarty PL. 1979 Bioassay for monitoring biochemical methane potential and anaerobic toxicity Water Res 13 485 492
    • (1979) Water Res , vol.13 , pp. 485-492
    • Owen, W.F.1    Stuckey, D.L.2    Healy, J.B.3    Young, L.Y.4    McCarty, P.L.5
  • 33
    • 0038011419 scopus 로고    scopus 로고
    • Microbial in situ degradation of aromatic hydrocarbons in a contaminated aquifer monitored by carbon isotope fractionation
    • Richnow HH. Annweiler E. Michaelis W. Meckenstock RU. 2003 Microbial in situ degradation of aromatic hydrocarbons in a contaminated aquifer monitored by carbon isotope fractionation J Contam Hydrol 65 101 120
    • (2003) J Contam Hydrol , vol.65 , pp. 101-120
    • Richnow, H.H.1    Annweiler, E.2    Michaelis, W.3    Meckenstock, R.U.4
  • 34
    • 0031455377 scopus 로고    scopus 로고
    • Three-dimensional structure of L-2-haloacid dehalogenase from Xanthobacter autotrophicus GJ10 complexed with the substrate-analogue formate
    • Ridder IS. Rozeboom HJ. Kalk KH. Janssen DB. Dijkstra BW. 1997 Three-dimensional structure of L-2-haloacid dehalogenase from Xanthobacter autotrophicus GJ10 complexed with the substrate-analogue formate J Biol Chem 272 33015 33022
    • (1997) J Biol Chem , vol.272 , pp. 33015-33022
    • Ridder, I.S.1    Rozeboom, H.J.2    Kalk, K.H.3    Janssen, D.B.4    Dijkstra, B.W.5
  • 35
    • 0027337615 scopus 로고
    • Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase
    • Verschueren KH. Seljee F. Rozeboom HJ. Kalk KH. Dijkstra BW. 1993 Crystallographic analysis of the catalytic mechanism of haloalkane dehalogenase Nature 363 693 698
    • (1993) Nature , vol.363 , pp. 693-698
    • Verschueren, K.H.1    Seljee, F.2    Rozeboom, H.J.3    Kalk, K.H.4    Dijkstra, B.W.5
  • 36
    • 0030037613 scopus 로고    scopus 로고
    • Protein engineering studies of dichloromethane dehalogenase/glutathione S-transferase from Methylophilus sp strain DM11 Ser12 but not Tyr6 is required for enzyme activity
    • Vuilleumier S. Leisinger T. 1996 Protein engineering studies of dichloromethane dehalogenase/glutathione S-transferase from Methylophilus sp strain DM11 Ser12 but not Tyr6 is required for enzyme activity Eur J Biochem 239 410 417
    • (1996) Eur J Biochem , vol.239 , pp. 410-417
    • Vuilleumier, S.1    Leisinger, T.2
  • 37
    • 0036158688 scopus 로고    scopus 로고
    • The elusive roles of bacterial glutathione S-transferases: New lessons from genomes
    • Vuilleumier S. Pagni M. 2002 The elusive roles of bacterial glutathione S-transferases: new lessons from genomes Appl Microbiol Biotechnol 58 138 146
    • (2002) Appl Microbiol Biotechnol , vol.58 , pp. 138-146
    • Vuilleumier, S.1    Pagni, M.2
  • 38
    • 0035080934 scopus 로고    scopus 로고
    • Sequence variation in dichloromethane dehalogenases/glutathione S-transferases
    • Vuilleumier S. Ivos N. Dean M. Leisinger T. 2001 Sequence variation in dichloromethane dehalogenases/glutathione S-transferases Microbiology-Uk 147 611 619
    • (2001) Microbiology-Uk , vol.147 , pp. 611-619
    • Vuilleumier, S.1    Ivos, N.2    Dean, M.3    Leisinger, T.4
  • 39
    • 0034010663 scopus 로고    scopus 로고
    • Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane
    • Whiticar MJ. 1999 Carbon and hydrogen isotope systematics of bacterial formation and oxidation of methane Chem Geol 161 291 314
    • (1999) Chem Geol , vol.161 , pp. 291-314
    • Whiticar, M.J.1


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