A new species of Pythium with ornamented oogonia: Morphology, taxonomy, internal transcribed spacer region of its ribosomal RNA, and its comparison with related species

FEMS Microbiology Letters

Volumn 254, Issue 2, 2006, Pages 317-323

  Paul, Bernard ^a   Bala, Kanak ^a   Lassaad, Belbahri ^b   Calmin, Gautier ^b   Sanchez Hernandez, Esperanza ^c   Lefort, Francois ^b  

^a UNIVERSITÉ DE BOURGOGNE   (France)

^b UNIVERSITY OF APPLIED SCIENCES WESTERN SWITZERLAND   (Switzerland)

^c UNIVERSITY OF CÓRDOBA   (Spain)

Author keywords

Antheridia; ITS region; Oogonia; Oospores; Phylogenetic tree; Pythium spiculum; rRNA

Indexed keywords

FUNGAL RNA; INTERNAL TRANSCRIBED SPACER; NUCLEIC ACID BASE; RIBOSOME DNA; RIBOSOME RNA; RIBOSOMAL SPACER DNA;

ARTICLE; CELL SHAPE; CONTROLLED STUDY; FRANCE; FUNGAL MORPHOLOGY; FUNGUS ISOLATION; FUNGUS SPORE; GENE SEQUENCE; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE; OOMYCETES; PHYLOGENY; PHYTIUM SPICULUM; PORTUGAL; PRIORITY JOURNAL; PYTHIUM; PYTHIUM ABAPPRESSORIUM; PYTHIUM CONTIGUANUM; PYTHIUM CYLINDROSPORUM; PYTHIUM IRREGULARE; PYTHIUM MAMILLATUM; PYTHIUM PAROECANDRUM; PYTHIUM SYLVATICUM; RNA SEQUENCE; SOIL; SPAIN; SPECIES COMPARISON; SPOROGENESIS; TAXONOMY; VINEYARD; CLASSIFICATION; DNA SEQUENCE; GENETICS; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; RNA GENE; SEQUENCE ALIGNMENT;

FUNGI; OOMYCETES; PYTHIUM; PYTHIUM CONTIGUANUM; PYTHIUM CYLINDROSPORUM; PYTHIUM IRREGULARE; PYTHIUM MAMILLATUM; PYTHIUM PAROECANDRUM; PYTHIUM SPINOSUM; PYTHIUM SYLVATICUM;

BASE SEQUENCE; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; FRANCE; GENES, RRNA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PYTHIUM; RNA, RIBOSOMAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SPAIN;

EID: 33644869500     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2005.00048.x     Document Type: Article

References (20)

1. Cavalier-Smith TA 1998 A revised six-kingdom system of life Biol Rev Cambridge Philos Soc 73 203 266
2. Cooke DEL Drenth A Duncan JM Wagels G Brasier CM 2000 A molecular phylogeny of Phytophthora and related oomycetes Fung Gen Biol 30 17 32
3. Galtier N Gouy M Gautier C 1996 SEAVIEW and PHYLO_WIN, two graphic tools for sequence alignment and molecular phylogeny Comput Appl Biosci 12 543 548
4. Guindon S Gascuel O 2003 A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood Syst Biol 52 696 704
5. Hasegawa M Kishino H Yano TA 1985 Dating of the human-ape splitting by a molecular clock of mitochondrial DNA J Mol Evol 22 160 174
6. Huelsenbeck JP Ronquist F 2001 MRBAYES Bayesian inference of phylogeny Bioinformatics 17 754 755
7. Lanave C Preparata G Saccone C Serio G 1984 A new method for calculating evolutionary substitution rates J Mol Evol 20 86 93
8. Lévesque CA de Cock AWAM 2004 Molecular phylogeny and taxonomy of the genus Pythium Mycol Res 108 1363 1383
9. Martin F 1995 Meiotic instability of Pythium sylvaticum as demonstrated by inheritance of the nuclear markers and karyotype analysis Genetics 139 1233 1246
10. Paul B 1987 A new species of Pythium with ornamented oogonia from Algeria Mycologia 79 797 802
11. Paul B 1992 Pythium radiosum, a new species from the Bank of Lake Zurich Mycol Helv 5 1 8
12. Paul B 1999 Pythium ornacarpum a new species with ornamented oogonia isolated from soil in France FEMS Microbiol Lett 180 337 344
13. Paul B 2002 Pythium segnitium sp. nov., isolated from the Canary islands, its taxonomy, ITS region of rDNA, and its comparison with related species FEMS Microbiol Lett 217 207 212
14. Paul B 2003 Pythium carbonicum, a new species isolated from a spoil heap in northern France, the ITS region, taxonomy and comparison with related species FEMS Microbiol Lett 219 269 274
15. Paul B Galland D Bhatnagar T Dulieu H 1998 A new species of Pythium isolated from the Burgundy region of France FEMS Microbiol Lett 158 207 213
16. Paul B Galland D Masih I 1999 Pythium prolatum, isolated from soil in the Burgundy region a new record for Europe FEMS Microbiol Lett 173 69 75
17. Plaats-Niterink AJ 1981 Monograph of the genus Pythium Stud Mycol Baarn 21 1 242
18. Rodriguez F Oliver JF Martin A Medina JR 1990 The general stochastic model of nucleotide substitution J Theor Biol 142 485 501
19. Timothy C Paulitz TZ Adams K Mazzola M 2003 Pythium abappressorium- a new species from eastern Washington Mycologia 95 80 86
20. White TJ Burns T Lee S Taylor J 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics PCR Protocols: A Guide to Methods and Applications Innis MA Gelfand DH Sinsky JJ White TJ eds), pp. 315 322 Academic Press San Diego, CA