Archaeal and bacterial lipids in authigenic carbonate crusts from eastern Mediterranean mud volcanoes

Organic Geochemistry

Volumn 37, Issue 4, 2006, Pages 484-500

  Bouloubassi, Ioanna ^a   Aloisi, Giovanni ^a,c   Pancost, Richard D ^b,d   Hopmans, Ellen ^b   Pierre, Catherine ^a   Sinninghe Damsté, Jaap S ^b  

^a UNIVERSITÉ PIERRE ET MARIE CURIE   (France)

^b ROYAL NETHERLANDS INSTITUTE FOR SEA RESEARCH   (Netherlands)

^c UNIVERSITÉ LYON 1   (France)

^d UNIVERSITY OF BRISTOL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANAEROBIC OXIDATION; BACTERIAL LIPIDS; MICROBIAL MEMBRANE LIPIDS;

BACTERIA; BIOMARKERS; CARBON; CARBONATES; GLYCEROL; METHANE; OXIDATION; VOLCANOES;

LIPIDS;

AUTHIGENIC MINERAL; CARBONATE SEDIMENT; LIPID; MUD VOLCANO;

MEDITERRANEAN SEA;

ARCHAEA; BACTERIA (MICROORGANISMS);

EID: 33644867854     PISSN: 01466380     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.orggeochem.2005.11.005     Document Type: Article

References (81)

1. 4-consuming microorganisms and the formation of carbonate crusts at cold seeps Earth and Planetary Science Letters 203 2002 195 203
2. G. Aloisi, C. Pierre, J.-M. Rouchy, J.-P. Foucher, and J. Woodside Methane-related authigenic carbonates of eastern Mediterranean Sea mud volcanoes and their possible relation to gas hydrate destabilisation Earth and Planetary Science Letters 184 2000 321 338
3. A. Barbe, J.O. Grimalt, J.J. Pueyo, and J. Albaiges Characterization of model evaporitic environments through the study of lipid components OrganicGeochemistry 16 1990 815 828
4. Bian, L., Hinrichs, K.-U., Xie, T., Brassell, S.C., Iversen, N., Fossing, H., Jorgensen, B.B., Hayes, J.M., 2001. Algal and archaeal polyisoprenoids in a recent marine sediment: molecular isotopic evidence for anaerobic oxidation of methane. Geochemistry, Geophysics and Geosystems (G3) 2, paper number 2000GC000112.
5. M. Blumenberg, R. Seifert, J. Reitner, T. Pape, and W. Michaelis Membrane lipid patterns typify distinct anaerobic methanotrophic consortia Proceedings of the National Academy of Science of the USA 101 2004 11111 11116
6. A. Boetius, K. Ravenschlag, C.J. Schubert, D. Rickert, F. Widdel, A. Gieseke, R. Amann, B.B. Jorgensen, and O. Pfannkuche A marine microbial consortium apparently mediating anaerobic oxidation of methane Nature 407 2000 623 626
7. G. Bohrmann, J. Greinert, E. Suess, and M. Torres Authigenic carbonates from the Cascadia subduction zone and their relation to gas hydrate stability Geology 26 1998 647 650
8. J.L. Charlou, J.P. Donval, T. Zitter, N. Roy, P. Jean-Baptiste, J.P. Foucher, and J. Woodside Evidence of methane venting and geochemistry of brines on mud volcanoes of the eastern Mediterranean Sea Deep Sea Research 50 2003 941 958
9. M. De Rosa, and A. Gambacorta The lipids of archaeabacteria Progress in Lipid Research 27 1988 153 175
10. E.F. DeLong, L.L. King, R. Massana, H. Cittone, A. Murray, C. Schleper, and S.G. Wakeham Diphytanyl ether lipids in non-thermophilic crenarchaeotes Applied Environmental Microbiology 64 1998 1133 1138
11. N.J.E. Dowling, F. Widdel, and D.C. White Phospholipid ester-linked fatty acid biomarkers of acetate-oxidizing sulphate-reducers and other sulphide-forming bacteria Journal of General Microbiology 132 1986 1815 1825
12. M. Elvert, E. Suess, J. Greinert, and M.J. Whiticar Archaea mediating anaerobic methane oxidation in deep-sea sediments at cold seeps of the eastern Aleutian subduction zone OrganicGeochemistry 31 2000 1175 1187
13. Emeis, K.C., Robertson, A.H.F., Richter, C., et al, 1996. In: Proceedings of the Ocean Drilling Program, Initial Reports, 160. Ocean Drilling Program, College Station, TX.
14. G. Ferrante, I. Ekiel, G.B. Patel, and G.D. Sprott A novel core lipid isolated from the aceticlastic methanogen, Methanothrix concilii GP6 Biochimica et Biophysica Acta 963 1988 173 182
15. J.O. Grimalt, I. Yruela, C. Saiz-Jimenez, J. Toja, J.W. de Leeuw, and J. Albaigés Sedimentary lipid biogeochemistry of an hypereutrophic alkaline lagoon Geochimica et Cosmochimica Acta 55 1991 2555 2577
16. R.R. Haese, C. Meile, P. Van Cappellen, and G.J. De Lange Carbon geochemistry of cold seeps: methane fluxes and transformation in sediments from Kazan mud volcano, eastern Mediterranean Sea Earth and Planetary Science Letters 212 2003 361 375
17. 14C-carbon monoxide Marine Geology 137 1997 13 23
18. T. Härtner, K.L. Straub, and E. Kannenberg Occurrence of hopanoid lipids in anaerobic Geobacter species FEMS Microbiology Letters 243 2005 59 64
19. H.R. Harvey, M.C. Ederington, and G.B. McManus Lipid composition of the marine ciliates Pleuromona sp. and Fabrea salina: shifts in response to changes in diet Journal of Eukaryotic Microbiology 44 1997 189 193
20. J.M. Hayes, K.H. Freeman, B.N. Popp, and C.H. Hoham Compound-specific isotopic analyses: a novel tool for reconstruction of ancient biogeochemical processes OrganicGeochemistry 16 1990 1115 1128
21. J. Heider, A.M. Spormann, H.R. Beller, and F. Widdel Anaerobic bacterial metabolism of hydrocarbons FEMS Microbiological Reviews 22 1999 459 473
22. Heijs, S., Aloisi, G., Bouloubassi, I., Pancost, R.D., Pierre, C., Sinninghe Damsté, J.S., Gottschal, J.C., Forney, L.J., 2006. Microbial community structure of three deep sea carbonate crusts: novel archaea involved in anaerobic methane oxidation. Microbial Ecology, in press.
23. Hinrichs, K.-U., 2001. A molecular recorder of methane hydrate destabilization. Geochemistry, Geophysics and Geosystems (G3) 2, paper number 2000GC000118.
24. K.-U. Hinrichs, and A. Boetius The anaerobic oxidation of methane G. Wefer D. Billett D. Hebbeln B.B. Jorgensen M. Schlüter T.C.E. van Weering Ocean Margin Systems 2003 Springer 457 477
25. K.-U. Hinrichs, J.M. Hayes, S.P. Sylva, P.G. Brewer, and E.F. DeLong Methane-consuming archaeabacteria in marine sediments Nature 398 1999 802 805
26. Hinrichs, K.-U., Pancost, R.D., Summons, R.E., Sprott, G.D., Sylva, S.P., Sinninghe Damsté, J.S., Hayes, J.M., 2000a. Mass spectra of sn-2-hydroxyarchaeol, a polar-lipid biomarker for anaerobic methanotrophy. Geochemistry, Geophysics and Geosystems (G3) 1, paper number 2000GC000042.
27. K.-U. Hinrichs, R.E. Summons, V. Orphan, S.P. Sylva, and J.M. Hayes Molecular and isotopic analysis of anaerobic methane-oxidizing communities in marine sediments OrganicGeochemistry 31 2000 1685 1701
28. M.J. Hoefs, S. Schouten, J.W. de Leeuw, L.L. King, S.W. Wakeham, and J.S. Sinninghe Damsté Ether lipids of planktonic archaea in the marine water column Applied Environmental Microbiology 63 1997 3090 3095
29. T.M. Hoehler, M.J. Alperin, D.B. Albert, and C.S. Martens Field and laboratory studies of methane oxidation in an anoxic marine sediment: evidence for a methanogen-sulfate reducer consortium Global Geochemical Cycles 8 1994 451 463
30. G. Holzer, and J. Oro Gas chromatographic-mass spectrometric analysis of neutral lipids from methanogenic and thermoacidophilic bacteria Journal of Chromatography 186 1979 795 809
31. E.C. Hopmans, S. Schouten, R.D. Pancost, M.J.T. van der Meer, and J.S. Sinninghe Damsté Analysis of intact tetraether lipids in archaeal cell material and sediments by high performance liquid chromatography/atmospheric pressure chemical ionization mass spectrometry Rapid Communications in Mass Spectrometry 14 2000 585 589
32. L. Jahnke, R.E. Summons, L.M. Dowling, and K.D. Zahiralis Identification of methanotrophic lipid biomarkers in cold-seep mussel gills: chemical and isotopic analysis Applied Environmental Microbiology 61 1995 576 582
33. T. Kaneda Iso- and anteiso-fatty acids in bacteria: biosynthesis, function, and taxonomic significance Microbiological Reviews 55 1991 288 302
34. J.P. Kennett, K.G. Cannariato, I.L. Hendy, and R.J. Behl Carbon isotopic evidence for methane hydrate instability during Quaternary interstadials Science 228 2000 128 133
35. L.L. King, T.K. Pease, and S.G. Wakeham Archaea in Black Sea water column particulate matter and sediments - evidence from ether lipid derivatives OrganicGeochemistry 28 1998 677 688
36. G. Kleemann, K. Poralla, G. Englert, H. Kjosen, S. Liaaen-Jensen, S. Neunlist, and M. Rohmer Tetrahymanol from the autotrophic bacterium Rhodopseudomonas palustris: first report of a gammacerane triterpene from a prokaryote Journal of General Microbiology 136 1990 2551 2553
37. K. Knittel, A. Boetius, A. Lemke, H. Eilers, K. Lochte, O. Pfannkuche, and P. Linke Activity, distribution, and diversity of sulfate reducers and other bacteria in sediments above gas hydrate (Cascadia Margin, Oregon) Geomicrobiological Journal 20 2003 269 294
38. K. Knittel, T. Lösekann, A. Boetius, R. Kort, and R. Amann Diversity and distribution of methanotrophic archaea at cold seeps Applied Environmental Microbiology 71 2005 467 479
39. Y. Koga, M. Nishihara, H. Morii, and M. Akagawa-Matsushita Ether polar lipids of methanogenic bacteria: structures, comparative aspects, and biosyntheses Microbiological Reviews 57 1993 164 182
40. Y. Koga, H. Morii, M. Akagawa-Matsushita, and M. Ohga Correlation of polar composition with 16S rRNA phylogeny in methanogens. Further analysis of lipid component parts Bioscience, Biotechnology, Biochemistry 62 1998 230 236
41. B.D. Lanoil, R. Sassen, M.T. La Duc, S.T. Sweet, and K.H. Nealson Bacteria and archaea physically associated with Gulf of Mexico gas hydrates Applied Environmental Microbiology 67 2001 5143 5153
42. M. Maslin, M. Owen, S. Day, and D. Long Linking continental-slope failures and climate change: testing the clathrate hypothesis Geology 32 2004 53 56
43. MEDINAUT/MEDINETH Shipboard Scientific Parties, 2000. Linking Mediterranean brine pools and mud volcanism. EOS Transactions (AGU) 81, pp. 63-82.
44. W. Michaelis, R. Seifert, K. Nauhaus, T. Treude, V. Thiel, M. Blumenberg, K. Knittel, A. Gieseke, K. Peterknecht, T. Pape, A. Boetius, R. Amann, B.B. Jorgensen, F. Widdel, J. Peckmann, N.V. Pimenov, and M. Gulin Microbial reefs in the Black Sea fuelled by anaerobic oxidation of methane Science 297 2002 1013 1015
45. K. Nauhaus, A. Boetius, M. Krüger, and F. Widdel In vitro demonstration of anaerobic oxidation of methane coupled to sulphate reduction in sediment from a marine gas hydrate area Environmental Microbiology 4 2002 296 305
46. K. Olu-Le Roy, M. Sibuet, A. Fiala-Medioni, S. Gofas, C. Salas, A. Mariotti, J.-P. Foucher, and J. Woodside Cold seep communities in the deep eastern Mediterranean Sea: composition, symbiosis and spatial distribution on mud volcanoes Deep Sea Research 51 2004 1915 1936
47. V.J. Orphan, K.-U. Hinrichs, W. Ussler III, C.K. Paull, L.T. Taylor, S.P. Sylva, J.M. Hayes, and E.F. DeLong Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic marine sediments Applied Environmental Microbiology 67 2001 1922 1934
48. V.J. Orphan, C.H. House, K.-U. Hinrichs, K.D. McKeegan, and E.F. DeLong Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis Science 293 2001 484 487
49. V.J. Orphan, C.H. House, K.-U. Hinrichs, K. McKeegan, and E.F. DeLong Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments Proceedings of the National Academy of Science of the USA 99 2002 7663 7668
50. G. Ourisson, and P. Albrecht Hopanoids. 1. Geohopanoids: the most abundant natural products on earth? Accounts of Chemical Research 25 1992 398 402
51. R.D. Pancost, J.S. Sinninghe Damsté, S. de Lint, M.J.E.C. van der Maarel, J.C. Gottschal The Medinaut Shipboard Scientific Party Biomarker evidence for widespread anaerobic methane oxidation in Mediterranean sediments by a consortium of methanogenic archaea and bacteria Applied Environmental Microbiology 66 2000 1126 1132
52. R.D. Pancost, I. Bouloubassi, G. Aloisi, J.S. Sinninghe Damsté The Medinaut Shipboard Scientific Party Three-series of non-isoprenoidal dialkyl glycerol diethers in cold-seep carbonate crusts OrganicGeochemistry 32 2001 695 707
53. R.D. Pancost, E.C. Hopmans, J.S. Sinninghe Damsté The Medinaut Shipboard Scientific Party Archaeal lipids in Mediterranean cold seeps: molecular proxies for anaerobic methane oxidation Geochimica et Cosmochimica Acta 65 2001 1611 1627
54. R.D. Pancost, and J.S. Sinninghe Damsté Carbon isotopic compositions of prokaryotic lipids as tracers of carbon cycling in diverse settings Chemical Geology 195 2003 29 58
55. R.D. Pancost, C.L. Zhang, J. Tavacoli, H.M. Talbot, P. Farrimond, S. Schouten, J.S. Sinninghe Damsté, and R. Sassen Lipid biomarkers preserved in hydrate-associated authigenic carbonate rocks of the Gulf of Mexico Palaeogeography, Palaeoclimatology, Palaeoecology 207 2005 48 66
56. J.B. Risatti, S.J. Rowland, D.A. Yon, and J.R. Maxwell Stereochemical studies of acyclic isoprenoids. XII. Lipids of methanogenic bacteria and possible contributions to sediments OrganicGeochemistry 6 1984 93 104
57. A.H.F. Robertson ODP Leg 160 Scientific Party Mud volcanism on the Mediterranean Ridge: initial results of Ocean Drilling Program, Leg 160 Geology 24 1996 239 242
58. M. Rohmer, P. Bouvier-Nave, and G. Ourisson Distribution of hopanoid triterpenes in prokaryotes Journal of General Microbiology 130 1984 1137 1150
59. H. Rütters, H. Sass, H. Cypionka, and J. Rullkötter Monoalkylether phospholipids in the sulfate-reducing bacteria Desulfosarcina variabilis and Desulforhabdus amnigenus Archives of Microbiology 176 2001 435 442
60. S. Schouten, M.J.E.C. van der Maarel, R. Huber, and J.S. Sinninghe Damsté 2,6,10,15,19-Pentamethylicosenes in Methanolobus bombayensis, a marine methanogenic archaeon, and in Methanosarcina mazei OrganicGeochemistry 26 1997 409 414
61. S. Schouten, M.J.L. Hoefs, M.P. Koopmans, H.-J. Bosch, and J.S. Sinninghe Damsté Structural characterization, occurrence and fate of archaeal ether-bound acyclic and cyclic biphytanes and corresponding diols in sediments OrganicGeochemistry 29 1998 1305 1319
62. S. Schouten, E.C. Hopmans, R.D. Pancost, and J.S. Sinninghe Damsté Widespread occurrence of structurally diverse tetraether membrane lipids: evidence for the ubiquitous presence of low-temperature relatives of hyperthermophiles Proceedings of the National Academy of Science of the USA 97 2000 14421 14426
63. M. Sibuet, and K. Olu Biogeography, biodiversity, and fluid dependence of deep-sea cold seep communities at active and passive margins Deep Sea Research 45 1998 517 567
64. J.S. Sinninghe Damsté, W.I.C. Rijpstra, S. Schouten, J.A. Fuerst, M.S.M. Jetten, and M. Strous The occurrence of hopanoids in planctomycetes: implications for the sedimentary biomarker record OrganicGeochemistry 35 2004 561 566
65. G.D. Sprott, C.J. Dicaire, C.G. Choquet, G.B. Patel, and I. Ekiel Hydroxydiether lipid structures in Methanosarcina spp. and Methanococcus voltae Applied Environmental Microbiology 59 1993 912 914
66. A. Stadnitskaia, M. Baas, M.K. Ivanov, T.C.E. Van Weering, and J.S. Sinninghe Damsté Novel archaeal macrocyclic diether core membrane lipids in a methane-derived carbonate crust from a mud volcano in the Sorokin Trough, NE Black Sea Archaea 1 2003 165 173
67. A. Stadnitskaia, G. Muyzer, B. Abbas, M.J.L. Coolen, E.C. Hopmans, M. Baas, T.C.E. van Weering, M.K. Ivanov, E. Poludetkina, and J.S. Sinninghe Damsté Biomarker and 16rDNA evidence for anaerobic oxidation of methane and related carbonate precipitation in deep-sea mud volcanoes of the Sorokin Trough, Black Sea Marine Geology 217 2005 67 96
68. R.E. Summons, and L.L. Jahnke Identification of the methylhopanes in sediments and petroleum Geochimica et Cosmochimica Acta 54 1990 247 251
69. A. Teske, K.-U. Hinrichs, V. Edgcomb, A. de Vera Gomez, D. Kysela, S.P. Sylva, M.L. Sogin, and H.W. Jannasch Microbial diversity of hydrothermal sediments in the Guyamas Basin: evidence for anaerobic methanotrophic communities Applied Environmental Microbiology 68 2002 1994 2007
70. V. Thiel, J. Peckmann, R. Seifert, P. Wehrung, J. Reitner, and W. Michaelis Highly isotopically depleted isoprenoids: molecular markers for ancient methane venting Geochimica et Cosmochimica Acta 63 1999 3959 3966
71. V. Thiel, J. Peckmann, H.H. Richnow, U. Luth, J. Reitner, and W. Michaelis Molecular signals for anaerobic methane oxidation in Black Sea seep carbonates and a microbial mat Marine Chem. 73 2001 97 112
72. V. Thiel, M. Blumenberg, T. Pape, R. Seifert, and W. Michaelis Unexpected occurrence of hopanoids at gas seeps in the Black Sea OrganicGeochemistry 34 2003 81 87
73. D.L. Valentine Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review Antonie van Leeuwenhoek 81 2002 271 282
74. D.L. Valentine, and W.S. Reeburgh New perspectives on anaerobic methane oxidation Environmental Microbiology 2 2000 477 484
75. M.I. Venkatesan Tetrahymanol: its widespread occurrence and geochemical significance Geochimica et Cosmochimica Acta 53 1989 3095 3101
76. J.K. Volkman, and J.R. Maxwell Acyclic isoprenoids as biological markers R.B. Johns Biological Markers in the Sedimentary Record 1986 Elsevier Amsterdam 1 46
77. S.G. Wakeham, C.M. Lewis, E.C. Hopmans, S. Schouten, and J.S. Sinninghe Damsté Archaea mediate anaerobic oxidation of methane in deep euxinic waters of the Black Sea Geochimica et Cosmochimica Acta 67 2003 1359 1374
78. S.G. Wakeham, E.C. Hopmans, S. Schouten, and J.S. Sinninghe Damsté Archaeal lipids and anaerobic oxidation of methane in euxinic water columns: a comparative study of the Black Sea and Cariaco Basin Chemical Geology 205 2004 427 442
79. J.P. Werne, M. Baas, and J.S. Sinninghe Damsté Molecular isotopic tracing of carbon flow and trophic relationships in a methane-supported benthic microbial community Limnology and Oceanography 47 2002 1694 1701
80. J.P. Werne, R.R. Haese, T. Zitter, G. Aloisi, I. Bouloubassi, S. Heijs, A. Fiala-Medioni, R.D. Pancost, J.S. Sinninghe Damsté, and G. de Lange Life at cold seeps: a synthesis of biogeochemical and ecological data from Kazan mud volcano, eastern Mediterranean Sea Chemical Geology 205 2004 367 390
81. C.L. Zhang, R.D. Pancost, R. Sassen, Y. Qian, and S.A. Macko Archaeal lipid biomarkers and isotopic evidence of anaerobic methane oxidation associated with gas hydrates in the Gulf of Mexico OrganicGeochemistry 34 2003 827 836