Backbone 1H, 15N, and13C resonance assignments and secondary-structure of conserved hypothetical protein HP0894 from Helicobacter pylori

Molecules and Cells

Volumn 20, Issue 3, 2005, Pages 442-445

  Han, Kyung Doo ^a   Park, Sung Jean ^a   Lee, Bong Jin ^a  

^a Seoul National University   (South Korea)

Author keywords

Backbone Resonance Assignment; Helicobacter pylori; HP0894; Hypothetical Protein; NMR; Unknown Protein

Indexed keywords

CARBON 13; HYDROGEN; NITROGEN 15; PROTEIN HP0894; RECOMBINANT PROTEIN; UNCLASSIFIED DRUG; BACTERIAL DNA; BACTERIAL PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; HELICOBACTER PYLORI; NONHUMAN; PROTEIN ANALYSIS; PROTEIN INTERACTION; PROTON NUCLEAR MAGNETIC RESONANCE; CHEMISTRY; ESCHERICHIA COLI; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEAR MAGNETIC RESONANCE; OPEN READING FRAME; PROTEIN SECONDARY STRUCTURE;

CAMPYLOBACTER JEJUNI; ENTEROCOCCUS FAECALIS; ESCHERICHIA COLI; HAEMOPHILUS; HELICOBACTER PYLORI; STREPTOCOCCUS PNEUMONIAE; VIBRIO;

BACTERIAL PROTEINS; DNA, BACTERIAL; ESCHERICHIA COLI; HELICOBACTER PYLORI; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OPEN READING FRAMES; PROTEIN STRUCTURE, SECONDARY; RECOMBINANT PROTEINS;

EID: 33644863942     PISSN: 10168478     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (18)

1. Alm, R. A., Ling, L. S., Moir, D. T., King, B. L., Brown, E. D., et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397, 176-180.
2. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
3. Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., et al. (2002) The Pfam protein families data base. Nucleic Acids Res. 30, 276-280.
4. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., et al. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293.
5. 1H multiple quantum coherence spectroscopy. FEBS Lett. 243, 93-98.
6. Grzesiek, S. and Bax, A. (1992) Correlating backbone amide and side chain resonances in larger proteins by multiple relayed triple resonance NMR. J. Am. Chem. Soc. 114, 6291-6293.
7. Ikura, M., Bax, A., Clore, M., and Gronenborn, A. M. (1990) Detection of nuclear Overhauser effects between degenerate amide proton resonances by heteronuclear three-dimensional nuclear magnetic resonance spectroscopy. J. Am. Chem. Soc. 112, 9020-9021.
8. Kay, R. E., Ikura, M., Tschudin, R., and Bax, A. (1990) Three-dimensional triple resonance NMR spectroscopy of isotopically enriched proteins. J. Magn. Reson. 89, 496-502.
9. Lee, T. B., Lim, D. Y., Jeon, H. J., Min Y. D., Kim, K. C., et al. (2003) Differential induction of Mn-containing Superoxide dismutase by paraquat in peripheral lymphocytes of normal subjects and gastric cancer patients. Mol. Cells 16, 13-18.
10. Marchler-Bauer, A. and Bryant, S. H. (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 32, W327-331.
11. Marshall, B. J. and Warren, J. R. (1984) Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet 1, 1311-1315.
12. Peek, Jr. R. M. and Blaser, M. J. (2002) Helicobacter pylori and gastrointestinal tract adenocarcinomas. Nat. Rev. Cancer 2, 28-37.
13. Rothenbacher, D. and Brenner, H. (2003) Burden of Helicobacter pylori and H. pylori-related diseases in developed countries: recent developments and future implications. Microbes Infect. 5, 693-703.
14. Sachs, G., Weeks, D. I., Melchers, K., and Scott, D. R. (2003) The gastric biology of Helicobacter pylori. Anna. Rev. Physiol. 65, 349-369.
15. Tomb, J. F., White, O., Kerlavage, A. R., Clayton, R. A., Sutton, G. G., et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539-547.
16. Wishart, D. S. and Sykes, B. D. (1994) Chemical shifts as a tool for structure determination. Meth. Enzymol. 239, 363-392.
17. Wittekind, M. and Mueller, L. (1993) HNCACB, A high sensitivity 3D NMR experiment to correlate amide proton and nitrogen resonances with the a-carbon and b-carbon resonances in proteins. J. Magn. Reson. Ser. B101, 214-217.
18. Wotherspoon, A. C., Doglioni, C., Diss, T. C., Pan, L., Moschini, A., et al. (1993) Regression of primary low-grade B-cell gastric lymphoma of mucosa-associated lymphoid tissue type after eradication of Helicobacter pylori. Lancet 342, 575-577.