MitoRes: A resource of nuclear-encoded mitochondrial genes and their products in Metazoa

BMC Bioinformatics

Volumn 7, Issue , 2006, Pages

  Catalano, Domenico ^a   Licciulli, Flavio ^a   Turi, Antonio ^a   Grillo, Giorgio ^a   Saccone, Cecilia ^a,b   D'Elia, Domenica ^a  

^a INSTITUTE OF BIOMEDICAL TECHNOLOGIES   (Italy)

^b UNIVERSITY OF BARI   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

COMPARATIVE ANALYSIS; FUNCTIONAL GENOMICS; GRAPHICAL INTERFACE; MITOCHONDRIAL BIOGENESIS; MITOCHONDRIAL GENES; MOLECULAR MECHANISM; RELATIONAL DATABASE; SEQUENCE SIMILARITY;

BIOINFORMATICS; DATABASE SYSTEMS; EXTRACTION; METABOLISM; MITOCHONDRIA; PROTEINS; SEARCH ENGINES; TOOLS;

GENES;

GENE PRODUCT; MITOCHONDRIAL PROTEIN; SIGNAL PEPTIDE; MITOCHONDRIAL DNA;

ARTICLE; AUTOMATION; BIOGENESIS; BIOINFORMATICS; CELL METABOLISM; CELL ORGANELLE; CELL RESPIRATION; COMPUTER INTERFACE; COMPUTER MODEL; DNA FLANKING REGION; ENERGY YIELD; EUKARYOTE; EXON; FUNCTIONAL GENOMICS; GENE SEQUENCE; GENOMICS; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; INTRON; METAZOON; MITOCHONDRIAL RESPIRATION; MITOCHONDRION; MITORES DATABASE; MOLECULAR MECHANICS; PROTEIN ANALYSIS; PROTEIN DATABASE; PROTEIN STRUCTURE; PROTEOMICS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; UNTRANSLATED REGION; ANIMAL; ANOPHELES GAMBIAE; BIOLOGICAL MODEL; BIOLOGY; CELL NUCLEUS; CHROMOSOME MAP; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; DROSOPHILA; DROSOPHILA MELANOGASTER; FACTUAL DATABASE; GENETIC DATABASE; GENETICS; GENOME; METABOLISM; MOLECULAR EVOLUTION; NUCLEIC ACID DATABASE; PROCEDURES;

EUKARYOTA; METAZOA;

ANIMALS; ANOPHELES GAMBIAE; CELL NUCLEUS; CHROMOSOME MAPPING; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; DATABASES, GENETIC; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; DNA, MITOCHONDRIAL; DROSOPHILA; DROSOPHILA MELANOGASTER; EVOLUTION, MOLECULAR; EXONS; GENOME; INTERNET; INTRONS; MITOCHONDRIA; MITOCHONDRIAL PROTEINS; MODELS, BIOLOGICAL; PROTEIN SORTING SIGNALS; SEQUENCE ANALYSIS, DNA;

EID: 33644835339     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-36     Document Type: Article

References (22)

1. Saraste M: Oxidative phosphorylation at the fin de siecle. Science 1999, 283(5407):1488-1493.
2. Garesse R, Vallejo CG: Animal mitochondrial biogenesis and function: a regulatory cross-talk between two genomes. Gene 2001, 263(1-2):1-16.
3. Nisoli E, Clementi E, Moncada S, Carruba MO: Mitochondrial biogenesis as a cellular signaling framework. Biochem Pharmacol 2004, 67(1):1-15.
4. Kelly DP, Scarpulla RC: Transcriptional regulatory circuits controlling mitochondrial biogenesis and function. Genes Dev 2004, 18(4):357-368.
5. Cotter D, Guda P, Fahy E, Subramaniam S: MitoProteome: mitochondrial protein sequence database and annotation system. Nucliec Acids Res 2004:D463-467.
6. Andreoli C, Prokisch H, Hortnagel K, Mueller JC, Munsterkotter M, Scharfe C, Meitinger T: MitoP2, an integrated database on mitochondrial proteins in yeast and man. Nucleic Acids Res 2004:D459-462.
7. The Human Mitochondrial Protein Database [http://bioinfo.nist.gov:8080/ examples/servlets/index.html].
8. Sardiello M, Licciulli F, Catalano D, Attimonelli M, Caggese C: MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion. Nucleic Acids Res 2003, 31(1):322-4.
9. Attimonelli M, Catalano D, Gissi C, Grillo G, Licciulli F, Liuni S, Santamaria M, Pesole G, Saccone C: MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002. Nucliec Acids Res 2002, 30(1):172-173.
10. Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, et al.: The Ensembl genome database project. Nucliec Acids Res 2002, 30(1):38-41.
11. Pruitt KD, Maglott DR: RefSeq and LocusLink: NCBI gene-centered resources. Nucleic Acids Res 2001, 29(1):137-140.
12. Mignone F, Grillo G, Licciulli F, Iacono M, Liuni S, Kersey PJ, Duarte J, Saccone C, Pesole G: UTRdb and UTRsite: a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res 2005:D141-146.
13. Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, et al.: UniProt: the Universal Protein knowledgebase. Nucleic Acids Res 2004-D115-119.
14. Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 2000, 28(1):10-14.
15. Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, et al.: The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 2004:D258-261.
16. ITB-Bari SRS server [http://www.ba.itb.cnr.it/srs/].
17. Tatusova TA, Madden TL: BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiol Lett 1999, 174(2):247-250.
18. EMBOSS Documentation [http://emboss.sourceforge.net/docs/].
19. EMBOSS Stretcher program [http://emboss.sourceforge.net/apps/ stretcher.html].
20. The Open Source PHP framework [http://seagull.phpkitchen.com/].
21. The Bioperl Project [http://bio.perl.org/].
22. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucliec Acids Res 1997, 25(17):3389-3402.