Isolation and automated ribotyping of Mycobacterium lentiflavum from drinking water distribution system and clinical specimens

FEMS Microbiology Letters

Volumn 256, Issue 2, 2006, Pages 236-243

  Tsitko, Irina ^a,b   Rahkila, Riitta ^a   Priha, Outi ^a,c   Ali Vehmas, Terhi ^a   Terefework, Zewdu ^a   Soini, Hanna ^a   Salkinoja Salonen, Mirja S ^a  

^a NATIONAL PUBLIC HEALTH INSTITUTE   (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

^c VTT TECHNICAL RESEARCH CENTRE OF FINLAND   (Finland)

Author keywords

Biofilm; Drinking water; Mycobacterium lentiflavum; Ribotyping

Indexed keywords

DRINKING WATER; RNA 16S;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; BIOFILM; CONTROLLED STUDY; DATA BASE; GENE SEQUENCE; MYCOBACTERIUM; MYCOBACTERIUM LENTIFLAVUM; MYCOBACTERIUM PALUSTRE; MYCOBACTERIUM SIMIAE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RIBOTYPING; WATER ANALYSIS; WATER SUPPLY;

BIOFILMS; CLUSTER ANALYSIS; DEOXYRIBONUCLEASE ECORI; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; DRUG RESISTANCE, MULTIPLE, BACTERIAL; HUMANS; MICROBIAL SENSITIVITY TESTS; MOLECULAR SEQUENCE DATA; MYCOBACTERIUM; MYCOBACTERIUM INFECTIONS; PATTERN RECOGNITION, AUTOMATED; RIBOTYPING; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; STATISTICS; WATER MICROBIOLOGY; WATER SUPPLY;

BACTERIA (MICROORGANISMS); CORYNEBACTERINEAE; MYCOBACTERIUM; MYCOBACTERIUM LENTIFLAVUM; MYCOBACTERIUM PALUSTRE; MYCOBACTERIUM SIMIAE;

EID: 33644831233     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2006.00116.x     Document Type: Article

References (31)

1. Anonymous 2004 Infectious Diseases in Finland 2003 National Public Health Institute Helsinki
2. Bercovier H Kafri O Sela S 1986 Mycobacteria possess a surprisingly small number of ribosomal RNA genes in relation to the size of their genome Biochem Biophys Res Commun 136 1136 1141
3. Brander E 1972 A simple way of detecting pyrazinamide resistance Tubercle 53 128 131
4. Brisse S Fussing V Ridwan B Verhoef J Willems RJL 2002 Automated ribotyping of vancomycin-resistant Enterococcus faecium isolates J Clin Microbiol 40 1977 1984
5. Busse H-J Kainz A Tsitko IV Salkinoja-Salonen M 2000 Riboprints as a tool for rapid preliminary identification of sphingomonads Syst Appl Microbiol 23 115 123
6. Camper A Burr M Ellis B Butterfield P Abernathy C 1999 Development and structure of drinking water biofilms and techniques for their study J Appl Microbiol 85 1 12
7. Clermont D Harmant C Bizet C 2001 Identification of strains of Alcaligenes and Agrobacterium by a polyphasic approach J Clin Microbiol 39 3104 3109
8. De Baere T de Mendonca R Claeys G Verschraegen G Mijs W Verhelst R Rottiers S Van Simaey L De Ganck C Vaneechoutte M 2002 Evaluation of amplified rDNA restriction analysis (ARDRA) for the identification of cultured mycobacteria in a diagnostic laboratory BMC Microbiol 2 1 12
9. DeMarini DM Abu-Shakra A Felton CF Patterson KS Shelton ML 1995 Mutation spectra in salmonella of chlorinated, chloraminated, or ozonated drinking water extracts comparison to MX Environ Mol Mutagen 26 270 285
10. Devulder G de Perouse M Flandrois JP 2005 A multigene approach to phelogenetic analysis using the genus Mycobacterium as a model Int J Syst Evol Microbiol 55 293 302
11. Falkinham II. JO Norton CD LeChevallier MW 2001 Factors influencing numbers of Mycobacterium avium, Mycobacterium intracellulare, and other Mycobacteria in drinking water distribution systems Appl Environ Microbiol 67 1225 1231
12. Häggblom MM Nohynek LJ Palleroni NJ Kronqvist K Nurmiaho-Lassila EL Salkinoja-Salonen MS Klatte S Kroppenstedt RM 1994 Transfer of polychlorophenol-degrading Rhodococcus chlorophenolicus (Apajalahti et al 1986) to the genus Mycobacterium as Mycobacterium chlorophenolicum comb. nov Int J Syst Bacteriol 44 485 493
13. Kirschner P Springer B Vogel U Meier A Wrede A Kiekenbeck M Bange FC Böttger EC 1993 Genotypic identification of mycobacteria by nucleic acid sequence determination report of a 2-year experience in a clinical laboratory J Clin Microbiol 31 2882 2889
14. Leclerc H Schwartzbrod L Dei-Cas E 2002 Microbial agents associated with waterborne diseases Cr Rev Microbiol 28 371 409
15. Menendez MC Garcia MJ Navarro MC Gonzalez-y-Merchand JA Rivera-Guitierrez S Garcia-Sanchez L Cox RA 2002 Characterization of an rRNA operon (rrnB9 of Mycobacterium fortuitum and other mycobacterial species implication for the classification of mycobacteria J Bacteriol 184 1078 1088
16. Molteni C Gazzola L Cesari M Lombardi A Salerno F Tortoli E Codecasa L Penati V Franzetti F Gori A 2005 Mycobacterium lentiflavum infection in immunocompetent patient Emerg Infect Dis [serial on the Internet] 11 119 122
17. Parish T Stoker NG 1998 Mycobacteria, bugs and bugbears Methods in Molecular Biology, Vol 101: Mycobacteria Protocols Parish T Stoker NG eds), pp. 1 13 Humana Press Inc Totowa, NJ
18. Patel JB Leonard DGB Pan X Musser JM Berman RE Nachamkin I 2000 Sequence-based identification of Mycobacterium species using the MicroSeq 500 16S rDNA bacterial identification system J Clin Microbiol 38 246 251
19. Primm TP Lucero CA Falkinham III. JO 2004 Health impacts of environmental mycobacteria Clin Microbiol Rev 17 98 106
20. Ramaswamy SV Reich R Dou S-J Jasperse L Pan X Wanger A Quitugua T Raviss EA 2003 Single nucleotide polymorphisms in genes associated with isoniazid resistance in Mycobacterium tuberculosis Antimicrob Agents Chem 47 1241 1250
21. Reischl U Feldmann K Naumann L Gaugler BJM Ninet B Hirschel B Emler S 1998 16S rRNA sequence diversity in Mycobacterium celatum strains caused by presence of two different copies of 16S rRNA gene J Clin Microbiol 36 1761 1764
22. Riley LV 2004 Molecular Epidemiology of Infectious Diseases p. 49. ASM Press Washington, DC
23. Ristola MA von Reyn CF Arbeit RD et al 1999 High rates of disseminated infection due to non-tuberculous mycobacteria among AIDS patients in Finland J Infect Dis 39 61 67
24. Satokari R Mattila-Sandholm T Suihko M-L 2000 Identification of pediococci by ribotyping J Appl Microbiol 88 260 265
25. Springer B Wu W-K Bodmer T et al 1996 Isolation and characterization of a unique group of slowly growing mycobacteria Description of Mycobacterium lentiflavum sp. nov J Clin Microbiol 34 1100 1107
26. Stackebrandt E Frederiksen W Garrity GM et al 2002 Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology Int J Syst Evol Microbiol 52 1043 1047
27. Telenti A Imboden P Marchesi F Lowrie D Cole ST Coltson MJ Matter L Schopfer K Bodmer T 1993 Detection of rifampin-resistance mutation in of Mycobacterium tuberculosis Lancet 341 647 650
28. Tortoli E 2003 Impact of genotypic studies on mycobacterial taxonomy the new mycobacteria of the 1990s Clin Microbiol Rev 16 319 354
29. Torvinen E Suomalainen S Lehtola MJ Miettinen IT Zacheus O Paulin L Katila ML Martikainen PJ 2004 Mycobacteria in water and loose deposits of drinking water distribution systems in Finland Appl Environ Microbiol 70 1973 1981
30. Vuorio R Andersson MA Rainey FA Kroppenstedt RM Kämpfer P Busse H-J Viljanen M Salkinoja-Salonen MS 1999 A new rapidly growing mycobacterial species, Mycobacterium murale sp. nov, isolated from the indoor walls of a children's day care centre Int J Syst Bacteriol 49 25 35
31. Zhang Y Heym B Allen B Young D Cole ST 1992 The catalase-peroxidase gene and isoniazid resistance of Mycobacterium tuberculosis Nature 358 591 593