Porcine Toll-like receptor 1, 6, and 10 genes: Complete sequencing of genomic region and expression analysis

Molecular Immunology

Volumn 43, Issue 9, 2006, Pages 1474-1480

  Shinkai, Hiroki ^a,b   Muneta, Yoshihiro ^c   Suzuki, Kohei ^a,b   Eguchi Ogawa, Tomoko ^b   Awata, Takashi ^b   Uenishi, Hirohide ^b  

^a STAFF Institute   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^c NATIONAL INSTITUTE OF ANIMAL HEALTH   (Japan)

Author keywords

Microsatellite markers; Mycoplasma; Swine; TIR; Toll like receptors

Indexed keywords

TOLL LIKE RECEPTOR 1; TOLL LIKE RECEPTOR 10; TOLL LIKE RECEPTOR 6;

AMINO ACID SEQUENCE; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; FEMALE; GENE CLUSTER; GENE EXPRESSION; GENE SEQUENCE; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC POLYMORPHISM; HUMAN; INFECTION; INNATE IMMUNITY; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; SWINE;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CLONING, MOLECULAR; CONSERVED SEQUENCE; DNA, COMPLEMENTARY; GENE EXPRESSION; HUMANS; IMMUNITY, NATURAL; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE HOMOLOGY, AMINO ACID; SIGNAL TRANSDUCTION; SPECIES SPECIFICITY; SUS SCROFA; TOLL-LIKE RECEPTOR 1; TOLL-LIKE RECEPTOR 10; TOLL-LIKE RECEPTOR 6; VERTEBRATES;

ANIMALIA; MYCOPLASMA; SUIDAE; SUS SCROFA;

EID: 33644830696     PISSN: 01615890     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molimm.2005.09.006     Document Type: Article

References (29)

1. S. Akira, and K. Takeda Toll-like receptor signalling Nat. Rev. Immunol. 4 2004 499 511
2. S.F. Altschul, T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
3. C. Burge, and S. Karlin Prediction of complete gene structures in human genomic DNA J. Mol. Biol. 268 1997 78 94
4. T. Chuang, and R.J. Ulevitch Identification of hTLR10: a novel human Toll-like receptor preferentially expressed in immune cells Biochim. Biophys. Acta 1518 2001 157 161
5. W.J. Gallin Evolution of the "classical" cadherin family of cell adhesion molecules in vertebrates Mol. Biol. Evol. 15 1998 1099 1107
6. D. Goldstein, and C. Schlötterer Microsatellites: Evolution and Applications 1999 Oxford University Press Oxford
7. D. Gordon, C. Abajian, and P. Green Consed: a graphical tool for sequence finishing Genome Res. 8 1998 195 202
8. N. Hamasima, H. Suzuki, A. Mikawa, T. Morozumi, G. Plastow, and T. Mitsuhashi Construction of a new porcine whole-genome framework map using a radiation hybrid panel Anim. Genet. 34 2003 216 220
9. U. Hasan, C. Chaffois, C. Gaillard, V. Saulnier, E. Merck, S. Tancredi, C. Guiet, F. Briere, J. Vlach, S. Lebecque, G. Trinchieri, and E.E. Bates Human TLR10 is a functional receptor, expressed by B cells and plasmacytoid dendritic cells, which activates gene transcription through MyD88 J. Immunol. 174 2005 2942 2950
10. R. Lazarus, D. Vercelli, L.J. Palmer, W.J. Klimecki, E.K. Silverman, B. Richter, A. Riva, M. Ramoni, F.D. Martinez, S.T. Weiss, and D.J. Kwiatkowski Single nucleotide polymorphisms in innate immunity genes: abundant variation and potential role in complex human disease Immunol. Rev. 190 2002 9 25
11. T. Leeb, and M. Müller Comparative human-mouse-rat sequence analysis of the ICAM gene cluster on HSA 19p13.2 and a 185-kb porcine region from SSC 2q Gene 343 2004 239 244
12. Y. Muneta, H. Uenishi, R. Kikuma, K. Yoshihara, Y. Shimoji, R. Yamamoto, N. Hamashima, Y. Yokomizo, and Y. Mori Porcine TLR2 and TLR6: identification and their involvement in Mycoplasma hyopneumoniae infection J. Interferon Cytokine Res. 23 2003 583 590
13. A. Ozinsky, D.M. Underhill, J.D. Fontenot, A.M. Hajjar, K.D. Smith, C.B. Wilson, L. Schroeder, and A. Aderem The repertoire for pattern recognition of pathogens by the innate immune system is defined by cooperation between Toll-like receptors Proc. Natl. Acad. Sci. U.S.A. 97 2000 13766 13771
14. F.L. Rock, G. Hardiman, J.C. Timans, R.A. Kastelein, and J.F. Bazan A family of human receptors structurally related to Drosophila Toll Proc. Natl. Acad. Sci. U.S.A. 95 1998 588 593
15. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
16. S.K. Sanghavi, R. Shankarappa, and T.A. Reinhart Genetic analysis of Toll/interleukin-1 receptor (TIR) domain sequences from rhesus macaque Toll-like receptors (TLRs) 1-10 reveals high homology to human TLR/TIR sequences Immunogenetics 56 2004 667 674
17. S. Schwartz, Z. Zhang, K.A. Frazer, A. Smit, C. Riemer, J. Bouck, R. Gibbs, R. Hardison, and W. Miller PipMaker - a web server for aligning two genomic DNA sequences Genome Res. 10 2000 577 586
18. H. Shinkai, T. Morozumi, D. Toki, T. Eguchi-Ogawa, Y. Muneta, T. Awata, and H. Uenishi Genomic structure of eight porcine chemokine receptors and intergene sharing of an exon between CCR1 and XCR1 Gene 349 2005 55 66
19. B.E. Straw, S. D'Allaire, W.L. Mengeling, and D.J. Taylor Diseases of Swine eighth ed. 1999 Blackwell Publishing Blackwood
20. J. Sun, F. Wiklund, S.L. Zheng, B. Chang, K. Balter, L. Li, J.E. Johansson, G. Li, H.O. Adami, W. Liu, A. Tolin, A.R. Turner, D.A. Meyers, W.B. Isaacs, J. Xu, and H. Gronberg Sequence variants in Toll-like receptor gene cluster (TLR6-TLR1-TLR10) and prostate cancer risk J. Natl. Cancer Inst. 97 2005 525 532
21. Y. Suzuki, K. Yoshitomo-Nakagawa, K. Maruyama, A. Suyama, and S. Sugano Construction and characterization of a full length-enriched and a 5′-end-enriched cDNA library Gene 200 1997 149 156
22. K. Takeda, T. Kaisho, and S. Akira Toll-like receptors Annu. Rev. Immunol. 21 2003 335 376
23. O. Takeuchi, T. Kawai, P.F. Muhlradt, M. Morr, J.D. Radolf, A. Zychlinsky, K. Takeda, and S. Akira Discrimination of bacterial lipoproteins by Toll-like receptor 6 Int. Immunol. 13 2001 933 940
24. O. Takeuchi, T. Kawai, H. Sanjo, N.G. Copeland, D.J. Gilbert, N.A. Jenkins, K. Takeda, and S. Akira TLR6: a novel member of an expanding Toll-like receptor family Gene 231 1999 59 65
25. O. Takeuchi, S. Sato, T. Horiuchi, K. Hoshino, K. Takeda, Z. Dong, R.L. Modlin, and S. Akira Cutting edge: role of Toll-like receptor 1 in mediating immune response to microbial lipoproteins J. Immunol. 169 2002 10 14
26. Tanaka, M., Suzuki, K., Morozumi, T., Kobayashi, E., Matsumoto, T., Domukai, M., Eguchi-Ogawa, T., Shinkai, H., Awata, T., Uenishi, H., in press. Genomic structure and gene order of the region on swine chromosome 7q1.1 → q1.2. Anim. Genet.
27. K. Tantisira, W.T. Klimecki, R. Lazarus, L.J. Palmer, B.A. Raby, D.J. Kwiatkowski, E. Silverman, D. Vercelli, F.D. Martinez, and S.T. Weiss Toll-like receptor 6 gene (TLR6): single-nucleotide polymorphism frequencies and preliminary association with the diagnosis of asthma Genes Immun. 5 2004 343 346
28. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 25 1997 4876 4882
29. H. Uenishi, T. Eguchi, K. Suzuki, T. Sawazaki, D. Toki, H. Shinkai, N. Okumura, N. Hamasima, and T. Awata PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries Nucleic Acids Res. 32 2004 D484 D488