Legume genomes: More than peas in a pod

Current Opinion in Plant Biology

Volumn 6, Issue 2, 2003, Pages 199-204

  Young, Nevin Dale ^a   Mudge, Joann ^a   Ellis, T H Noel ^b  

^a UNIVERSITY OF MINNESOTA   (United States)

^b JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

EMBRYOPHYTA; LOTUS CORNICULATUS VAR. JAPONICUS; MEDICAGO TRUNCATULA; PISUM SATIVUM;

EID: 0037395024     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5266(03)00006-2     Document Type: Review

References (41)

1. Doyle JJ: Leguminosae. In Encyclopedia of Genetics. Edited by Brenner S, Miller JH. San Diego: Academic Press; 2001:1081-1085.
2. Schultze M, Kondorosi A: Regulation of symbiotic root nodule development. Annu Rev Genet 1998, 32:33-57.
3. Vanrhijn P, Fang Y, Galili S, Shaul O, Atzmon N, Wininger S, Eshed Y, Lum M, Li Y, To V et al.: Expression of early nodulin genes in alfalfa mycorrhizae indicates that signal transduction pathways used in forming arbuscular mycorrhizae and rhizobium-induced nodules may be conserved. Proc Natl Acad Sci USA 1997, 94:5467-5472.
4. Stark A, Madar Z: Phytoestrogens: a review of recent findings. J Ped Endocrin Metab 2002, 15:561-572.
5. Grant D, Cregan P, Shoemaker RC: Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. Proc Natl Acad Sci USA 2000, 97:4168-4173.
6. Lee JM, Grant D, Vallejos CE, Shoemaker RC: Genome organization in dicots. II. Arabidopsis as a 'bridging species' to resolve genome evolution events among legumes. Theor Appl Genet 2001, 103:765-773.
7. Marek LF, Mudge J, Darnielle L, Grant D, Hanson N, Paz M, Huihuang Y, Denny R, Larson K, Foster-Hartnett D et al.: Soybean genomic survey: BAC-end sequences near RFLP and SSR markers. Genome 2001, 44:472-581.
8. Foster-Hartnett D, Mudge J, Danesh D, Yan H, Larsen D, Denny R, Young ND: Comparative genomic analysis of sequences sampled from a small region on soybean molecular linkage group 'G'. Genome 2002, 45:634-645.
9. Yan H, Mudge J, Kim DJ, Shoemaker RC, Cook DR, Young ND: Estimates of conserved microsynteny among the genomes of Glycine max, Medicago truncatula and Arabidopsis thaliana. Theor Appl Genet, in press.
10. Kulikova O, Gualtieri G, Geurts R, Kim DJ, Cook D, Huguet T, de Jong JH, Fransz PF, Bisseling T: Integration of the FISH pachytene and genetic maps of Medicago truncatula. Plant J 2001, 27:49-58.
11. Doyle JJ, Doyle JL, Ballenger JA, Dickson EE, Kajita T, Ohashi H: A phylogeny of the chloroplast gene rbcL in the Leguminosae - taxonomic correlations and insights into the evolution of modulation. Am J Bot 1997, 84:541-554.
12. Kajita T, Ohashi H, Tateishi Y, Bailey CD, Doyle JJ: rbcL and legume phylogeny, with particular reference to Phaseoleae, Millettieae, and allies. Syst Bot 2001, 26:515-536.
13. Pearce SR, Harrison G, Li D, Heslop-Harrison JS, Kumar A, Flavell AJ: The Ty1-copia group retrotransposons in Vicia species: copy number, sequence heterogeneity and chromosomal location. Mol Gen Genet 1996, 250:305-315.
14. Pearce SR, Knox MR, Ellis THN, Flavell AJ, Kumar A: Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum. Mol Gen Genet 2000, 263:898-907.
15. Fu H, Dooner HK: Intraspecific violation of genetic colinearity and its implications in maize. Proc Natl Acad Sci USA 2002, 99:9573-9578.
16. Ellis THN, Turner L, Hellens RP, Lee D, Harker CL, Enard C, Domoney C, Davies DR: Linkage maps in pea. Genetics 1992, 130:649-663.
17. Knox MR, Ellis THN: Stability and inheritance of methylation states at Pstl sites in Pisum. Mol Gen Genet 2001, 265:497-507.
18. Nekrutenko A, Li W-H: Transposable elements are found in a large number of human protein-coding genes. Trends Genet 2001, 17:619-621.
19. Arabidopsis Genome Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815.
20. Vision TJ, Brown DG, Tanksley SD: The origins of genomic duplications in Arabidopsis. Science 2000, 290:2114-2117.
21. Gaut BS: Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses. Genome Res 2001, 11:55-66.
22. Lynch M, Conery JS: The evolutionary fate and consequences of duplicate genes. Science 2000, 290:1151-1155.
23. Li WH, Gu Z, Wang H, Nekrutenko A: Evolutionary analyses of the human genome. Nature 2001, 409:847-849.
24. Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlehwait J: Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151:1531-1545.
25. Sankov D: Gene and genome duplication. Curr Opin Genet Dev 2001, 11:681-684.
26. Shoemaker RC, Polzin K, Labate J, Specht J, Brummer EC, Olson T, Young ND, Concibido V, Wilcox J, Tamulonis JP et al.: Genome duplication in soybean (Glycine subgenus soja). Genetics 1996, 144:329-338.
27. Nakamura Y, Kaneki T, Asamizu E, Kato T, Sato S, Tabata S: Structural analysis of a Lotus japonicus genome. II. Sequence features and mapping of sixty-five TAC clones which cover the 6.5 Mb regions of the genome. DNA Res 2002, 9:63-70.
28. Sandhu D, Champoux JA, Bondareva SN, Gill KS: Identification and physical localization of useful genes and markers to a major gene-rich region on wheat group 1S chromosomes. Genetics 2001, 157:1735-1747.
29. Wicker T, Stein N, Albar L, Feuillet C, Schlagenhauf E, Keller B: Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution. Plant J 2001, 26:307-316.
30. Sandhu D, Gill KS: Gene-containing regions of wheat and the other grass genomes. Plant Physiol 2002, 128:803-811.
31. Vavilov NI: The law of homologous series in variation. J Genet 1922, 12:47-88.
32. Weeden NF, Muehlbauer FJ, Ladizinsky G: Extensive conservation of linkage relationships between pea and lentil genetic maps. J Hered 1992, 83:123-129.
33. Brauner S, Murphy RL, Walling JG, Przyborowski J, Weeden NF: STS markers for comparative mapping in legumes. J Am Soc Hort Sci 2002, 127:616-622.
34. Simon CJ, Muehlbauer FJ: Construction of a chickpea linkage map and its comparison with maps of pea and lentil. J Hered 1997, 88:115-119.
35. Menancio-Hautea D, Fatokun CA, Kumar L, Danesh D, Young ND: Comparative genome analysis of mungbean (Vigna radiata (L.) Wilczek) and cowpea (V. unguiculata (L.) Walpers) using RFLP mapping data. Theor Appl Genet 1993, 86:797-810.
36. Boutin SR, Young ND, Olsen TC, Yu ZH, Shoemaker RC, Vallejos CE: Genome conservation among three legume genera detected with DNA markers. Genome 1995, 38:928-937.
37. Gaut BS: Evolutionary dynamics of grass genomes. New Phytol 2002, 154:15-28.
38. Endre G, Kereszt A, Kevei Z, Mihacea S, Kaló P, Kiss GB: A receptor kinase gene regulating symbiotic nodule development. Nature 2002, 417:962-966.
39. Stracke S, Kistner C, Yoshida S, Mulder L, Sato S, Kaneko T, Tabata S, Sandal N, Stougaard K, Szczyglowski K, Parniske M: A plant receptor-like kinase required for both bacterial and fungal symbiosis. Nature 2002, 417:959-962.
40. Schauser L, Roussis A, Stiller J, Stougaard J: A plant regulator controlling development of symbiotic root nodules. Nature 1999, 402:191-195.
41. Gualtieri G, Kulikova O, Limpens E, Kim DJ, Cook DR, Bisseling T, Geurts R: Microsynteny between pea and Medicago truncatula in the SYM2 region. Plant Mol Biol 2002, 50:225-235.