메뉴 건너뛰기




Volumn 45, Issue 9, 2006, Pages 2767-2771

Adenosine is inherently favored as the branch-site RNA nucleotide in a structural context that resembles natural RNA splicing

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; BRANCH-SITE NUCLEOTIDE; DEOXYRIBOZYMES; ELECTROPHILE; NATURAL RNA SPLICING; RNA NUCLEOTIDE;

EID: 33644688620     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi052499l     Document Type: Article
Times cited : (25)

References (19)
  • 1
    • 3042732096 scopus 로고    scopus 로고
    • Directed evolution of nucleic acid enzymes
    • Joyce, G. F. (2004) Directed Evolution of Nucleic Acid Enzymes, Annu. Rev. Biochem. 73, 791-836.
    • (2004) Annu. Rev. Biochem. , vol.73 , pp. 791-836
    • Joyce, G.F.1
  • 2
    • 6344219578 scopus 로고    scopus 로고
    • Deoxyribozymes: DNA catalysts for bioorganic chemistry
    • Silverman, S. K. (2004) Deoxyribozymes: DNA catalysts for bioorganic chemistry, Org. Biomol. Chem. 2, 2701-2706.
    • (2004) Org. Biomol. Chem. , vol.2 , pp. 2701-2706
    • Silverman, S.K.1
  • 3
    • 1442286924 scopus 로고    scopus 로고
    • A DNA enzyme that mimics the first step of RNA splicing
    • Coppins, R. L., and Silverman, S. K. (2004) A DNA Enzyme that Mimics the First Step of RNA Splicing, Nat. Struct. Mol. Biol. 11, 270-274.
    • (2004) Nat. Struct. Mol. Biol. , vol.11 , pp. 270-274
    • Coppins, R.L.1    Silverman, S.K.2
  • 4
    • 14844285337 scopus 로고    scopus 로고
    • A deoxyribozyme that forms a three-helix-junction complex with its RNA substrates and has general RNA branch-forming activity
    • Coppins, R. L., and Silverman, S. K. (2005) A Deoxyribozyme That Forms a Three-Helix-Junction Complex with Its RNA Substrates and Has General RNA Branch-Forming Activity, J. Am. Chem. Soc. 127, 2900-2907.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 2900-2907
    • Coppins, R.L.1    Silverman, S.K.2
  • 5
    • 26644465737 scopus 로고    scopus 로고
    • Mimicking the first step of RNA splicing: An artificial DNA enzyme can synthesize branched RNA using an oligonucleotide leaving group as a 5′-exon analogue
    • Coppins, R. L., and Silverman, S. K. (2005) Mimicking the First Step of RNA Splicing: An Artificial DNA Enzyme Can Synthesize Branched RNA Using an Oligonucleotide Leaving Group as a 5′-Exon Analogue, Biochemistry 44, 13439-13446.
    • (2005) Biochemistry , vol.44 , pp. 13439-13446
    • Coppins, R.L.1    Silverman, S.K.2
  • 6
    • 0029066770 scopus 로고
    • Structure and activities of group II introns
    • Michel, F., and Ferat, J. L. (1995) Structure and activities of group II introns, Annu. Rev. Biochem. 64, 435-461.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 435-461
    • Michel, F.1    Ferat, J.L.2
  • 7
    • 0029827383 scopus 로고    scopus 로고
    • Group II introns: Elaborate ribozymes
    • Jacquier, A. (1996) Group II introns: Elaborate ribozymes, Biochimie 78, 474-487.
    • (1996) Biochimie , vol.78 , pp. 474-487
    • Jacquier, A.1
  • 8
    • 0003604405 scopus 로고    scopus 로고
    • (Gesteland, R. F., Cech, T. R., and Atkins, J. F., Eds.) 2nd ed., Cold Spring Harbor Laboratory Press, Plainview, NY
    • Burge, C. B., Tuschl, T., and Sharp, P. A. (1999) in The RNA World (Gesteland, R. F., Cech, T. R., and Atkins, J. F., Eds.) 2nd ed., pp 525-560, Cold Spring Harbor Laboratory Press, Plainview, NY.
    • (1999) The RNA World , pp. 525-560
    • Burge, C.B.1    Tuschl, T.2    Sharp, P.A.3
  • 9
    • 0031671299 scopus 로고    scopus 로고
    • More than one way to splice an RNA: Branching without a bulge and splicing without branching in group II introns
    • Chu, V. T., Liu, Q., Podar, M., Perlman, P. S., and Pyle, A. M. (1998) More than one way to splice an RNA: Branching without a bulge and splicing without branching in group II introns, RNA 4, 1186-1202.
    • (1998) RNA , vol.4 , pp. 1186-1202
    • Chu, V.T.1    Liu, Q.2    Podar, M.3    Perlman, P.S.4    Pyle, A.M.5
  • 10
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan, J. F., Groebe, D. R., Witherell, G. W., and Uhlenbeck, O. C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates, Nucleic Acids Res. 15, 8783-8798.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 12
    • 0347594188 scopus 로고    scopus 로고
    • Characterization of deoxyribozymes that synthesize branched RNA
    • Wang, Y., and Silverman, S. K. (2003) Characterization of Deoxyribozymes That Synthesize Branched RNA, Biochemistry 42, 15252-15263.
    • (2003) Biochemistry , vol.42 , pp. 15252-15263
    • Wang, Y.1    Silverman, S.K.2
  • 13
    • 24644492436 scopus 로고    scopus 로고
    • An mRNA is capped by a 2′,5′ lariat catalyzed by a group I-like ribozyme
    • Nielsen, H., Westhof, E., and Johansen, S. (2005) An mRNA is capped by a 2′,5′ lariat catalyzed by a group I-like ribozyme, Science 309, 1584-1587.
    • (2005) Science , vol.309 , pp. 1584-1587
    • Nielsen, H.1    Westhof, E.2    Johansen, S.3
  • 14
    • 20444469324 scopus 로고    scopus 로고
    • A deoxyribozyme that synthesizes 2′,5′-branched RNA with any branch-site nucleotide
    • Pratico, E. D., Wang, Y., and Silverman, S. K. (2005) A Deoxyribozyme That Synthesizes 2′,5′-Branched RNA with Any Branch-Site Nucleotide, Nucleic Acids Res. 33, 3503-3512.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3503-3512
    • Pratico, E.D.1    Wang, Y.2    Silverman, S.K.3
  • 15
    • 24644522818 scopus 로고    scopus 로고
    • Capping by branching: A new ribozyme makes tiny lariats
    • Pyle, A. M. (2005) Capping by branching: A new ribozyme makes tiny lariats, Science 309, 1530-1531.
    • (2005) Science , vol.309 , pp. 1530-1531
    • Pyle, A.M.1
  • 16
    • 0038210243 scopus 로고    scopus 로고
    • Deoxyribozymes that synthesize branched and lariat RNA
    • Wang, Y., and Silverman, S. K. (2003) Deoxyribozymes That Synthesize Branched and Lariat RNA, J. Am. Chem. Soc. 125, 6880-6881.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 6880-6881
    • Wang, Y.1    Silverman, S.K.2
  • 17
    • 24944445132 scopus 로고    scopus 로고
    • Efficient one-step synthesis of biologically related lariat RNAs by a deoxyribozyme
    • Wang, Y., and Silverman, S. K. (2005) Efficient One-Step Synthesis of Biologically Related Lariat RNAs by a Deoxyribozyme, Angew. Chem., Int. Ed. 44, 5863-5866.
    • (2005) Angew. Chem., Int. Ed. , vol.44 , pp. 5863-5866
    • Wang, Y.1    Silverman, S.K.2
  • 18
    • 0344520300 scopus 로고    scopus 로고
    • a of the internucleotidic 2′-hydroxyl group in diribonucleoside (3′→5′) monophosphates
    • a of the Internucleotidic 2′-Hydroxyl Group in Diribonucleoside (3′→5′) Monophosphates, J. Org. Chem. 68, 1906-1910.
    • (2003) J. Org. Chem. , vol.68 , pp. 1906-1910
    • Acharya, S.1    Foldesi, A.2    Chattopadhyaya, J.3
  • 19
    • 0031582058 scopus 로고    scopus 로고
    • Branch-site selection in a group II intron mediated by active recognition of the adenine amino group and steric exclusion of non-adenine functionalities
    • Liu, Q., Green, J. B., Khodadadi, A., Haeberli, P., Beigelman, L., and Pyle, A. M. (1997) Branch-site selection in a group II intron mediated by active recognition of the adenine amino group and steric exclusion of non-adenine functionalities, J. Mol. Biol. 267, 163-171.
    • (1997) J. Mol. Biol. , vol.267 , pp. 163-171
    • Liu, Q.1    Green, J.B.2    Khodadadi, A.3    Haeberli, P.4    Beigelman, L.5    Pyle, A.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.