Genetic and physiological architecture of early vigor in Aegilops tauschii, the D-genome donor of hexaploid wheat. A quantitative trait loci analysis

Plant Physiology

Volumn 139, Issue 2, 2005, Pages 1078-1094

  Ter Steege, Margreet W ^a   Den Ouden, Franka M ^a   Lambers, Hans ^b   Stam, Piet ^c   Peeters, Anton J M ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^c WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CROPS; GENETIC ENGINEERING; SEED;

FRAGMENT-LENGTH POLYMORPHISM; GROWTH TRAITS; TRAIT LOCI ANALYSIS;

PLANTS (BOTANY);

GENETIC ENGINEERING; PLANTS; SEEDLINGS; WHEAT;

AEGILOPS TAUSCHII; TRITICUM AESTIVUM;

ARTICLE; BIOMASS; CHROMOSOME MAP; GENETICS; GENOME; GROWTH, DEVELOPMENT AND AGING; MULTIGENE FAMILY; PHENOTYPE; PHYSIOLOGY; PLANT LEAF; POACEAE; POLYPLOIDY; QUANTITATIVE TRAIT LOCUS; WHEAT;

BIOMASS; CHROMOSOME MAPPING; GENOME, PLANT; MULTIGENE FAMILY; PHENOTYPE; PLANT LEAVES; POACEAE; POLYPLOIDY; QUANTITATIVE TRAIT LOCI; TRITICUM;

EID: 33644656408     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.105.063263     Document Type: Article

References (63)

1. Becraft PW (1999) Development of the leaf epidermis. Curr Top Dev Biol 45: 1-40
2. Botwright TL, Condon AG, Rebetzke GJ, Richards RA (2002) Field evaluation of early vigor for genetic improvement of grain yield in wheat. Aust J Agric Res 53: 1137-1145
3. Boyko E, Gill KS, Mickelson-Young L, Nasuda S, Raupp WJ, Ziegle JN, Singh S, Hassawi DS, Fritz AK, Namuth D, et al (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theor Appl Genet 99: 16-26
4. Brooks SA, Huang L, Gill BS, Fellers JP (2002) Analysis of 106 kb of contiguous DNA sequence from the D genome of wheat reveals high gene density and a complex arrangement of genes related to disease resistance. Genome 45: 963-972
5. Bultynck L, Fiorani F, Lambers H (1999) Control of leaf growth in an ecological perspective. Plant Biol 1: 14-18
6. Bultynck L, Fiorani F, van Volkenburgh E, Lambers H (2003) Epidermal cell division and cell elongation in two Aegilops species with contrasting leaf elongation rates. Funct Plant Biol 30: 425-432
7. Bultynck L, Lambers H (2004) Effects of applied gibberellic acid and paclobutrazol on leaf expansion and biomass allocation in two Aegilops species with contrasting leaf elongation rates. Physiol Plant 122: 143-151
8. Bultynck L, ter Steege MW, Schortemeyer M, Poot P, Lambers H (2004) From individual leaf elongation to whole shoot leaf area expansion; a comparison of three Aegilops and two Triticum species. Ann Bot (Lond) 94: 99-108
9. Buntjer JB (1999) Cross Checker Fingerprint Analysis Software v2.9. Wageningen University and Research Centre, Wageningen, The Netherlands
10. Cai HW, Morishima H (2002) QTL clusters reflect character associations in wild and cultivated rice. Theor Appl Genet 104: 1217-1228
11. Causse M, Rocher JP, Henry AM, Charcosset A, Prioul J, Devienne D (1995) Genetic dissection of the relationship between carbon metabolism and early growth in maize, with emphasis on key-enzyme loci. Mol Breed 1: 259-272
12. Clevering OA (1999) Between- and within-population differences in Phragmites australis. The effects of nutrients on seedling growth. Oecologia 121: 447-457
13. Cui KH, Peng SB, Xing YZ, Xu CG, Yu SB, Zhang Q (2002) Molecular dissection of seedling-vigor and associated physiological traits in rice. Theor Appl Genet 105: 745-753
14. Dijkstra P, Reegen HT, Kuiper PJC (1990) Relation between relative growth rate, endogenous gibberellins, and the response to applied gibberellic acid for Plantago major. Physiol Plant 79: 629-634
15. Dvorak J, Luo MC, Yang ZL (1998) Restriction fragment length polymorphism and divergence in the genomic regions of high and low recombination in self-fertilizing and cross-fertilizing Aegilops species. Genetics 148: 423-434
16. Elberse IAM (2002) Genetic analysis of growth characteristics. Hordeum spontaneum under nutrient limitation. PhD thesis. Utrecht University, Utrecht, The Netherlands
17. Ellis RP, Forster BP, Robinson D, Handley L, Gordon DC, Russel JR, Powell W (2000) Wild barley: a source of genes for crop improvement in the 21st century? J Exp Bot 51: 9-17
18. El-Lithy ME, Clerks EJM, Ruys GJ, Koornneef M, Vreugdenhil D (2004) Quantitative trait locus analysis of growth-related traits in a new Arabidopsis recombinant inbred population. Plant Physiol 135: 444-458
19. Feldman M, Sears ER (1981) The wild gene resources of wheat. Sci Am 244: 98-108
20. Fiorani F, Beemster GTS, Bultynck L, Lambers H (2000) Can meristematic activity determine variation in leaf size and elongation rate between four Poa species? A kinematic study. Plant Physiol 124: 845-855
21. Gale MD, Devos KM (1998) Comparative genetics in glasses. Proc Natl Acad Sci USA 95: 1971-1974
22. Garnier E, Salager JL, Laurent G, Sonié L (1999) Relationships between photosynthesis, nitrogen and leaf structure in 14 grass species and their dependence on the basis of expression. New Phytol 143: 119-129
23. Guyomarc'h H, Sourdille P, Charmet G, Edwards KJ, Bernard M (2002) Characterisation of polymorphic microsatellite markers from Aegilops tauschii and transferability to the D-genome of bread wheat. Theor Appl Genet 104: 1164-1172
24. Huang XQ, Cöster H, Ganal MW, Röder MS (2003) Advanced backcross QTL analysis for the identification of quantitative trait loci alleles from wild relatives of wheat. Theor Appl Genet 106: 1379-1389
25. Ishimaru K, Ono K, Kashiwagi T (2004) Identification of a new gene controlling plant height in rice using the candidate-gene strategy. Planta 218: 388-395
26. Jansen RC (1993) Interval mapping of multiple quantitative trait loci. Genetics 135: 205-211
27. Jansen RC, Stam P (1994) High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455
28. Kearsy MJ, Farquhar AGL (1998) QTL analysis in plants: where are we now? Heredity 80: 137-142
29. Khavin E, Coe E (1997) Mapped genomic locations for developmental functions and QTLs reflect concerted groups in maize (Zea mays L.). Theor Appl Genet 95: 343-352
30. Klepper B, Rickman RW, Peterson CM (1982) Quantitative characterization of vegetative development in small cereal grains. Agron J 74: 789-792
31. La Rota M, Sorrells ME (2004) Comparative DNA sequence analysis of mapped wheat ESTs reveals the complexity of genome relationships between rice and wheat. Funct Integr Genomics 4: 34-46
32. Lambers H, Poorter H (1992) Inherent variation in growth rate between higher plants: a search for physiological causes and ecological consequences. Adv Ecol Res 23: 187-261
33. Lelley T, Stachel M, Grausgruber H, Vollmann J (2000) Analysis of relationships between Aegilops tauschii and the D genome of wheat utilizing microsatellites. Genome 43: 661-668
34. Lemerle D, Gill GS, Murphy CE, Walker SR, Cousens RD, Mokhtari S, Peltzer SJ, Coleman R, Luckett DJ (2001) Genetic improvement and agronomy for enhanced wheat competitiveness with weeds. Aust J Agric Res 52: 527-548
35. López-Castaneda C, Richards RA, Farquhar GD, Williamson RE (1996) Seed and seedling characteristics contributing to variation in early vigor among temperate cereals. Crop Sci 36: 1257-1266
36. Lynch M, Walsh B (1998) Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, MA
37. Nagel OW, Konings H, Lambers H (2001) Growth rate and biomass partitioning of wild type and low-gibberellin tomato (Solanum lycopersicum) plants growing at a high and low nitrogen supply. Physiol Plant 111: 33-39
38. Poorter H, Remkes C (1990) Leaf area ratio and net assimilation rate of 24 wild species differing in relative growth rate. Oecologia 83: 553-559
39. Poorter H, van der Werf A (1998) Is inherent variation in RGR determined by LAR at low irradiance and by NAR at high irradiance? A review of herbaceous species. In H Lambers, H Poorter, M Vuuren, eds, Inherent Variation in Plant Growth, Physiological Mechanisms and Ecological Consequences. Backhuys Publishers, Leiden, The Netherlands, pp 309-336
40. Poorter H, van Rijn CPE, Vanhala TK, Verhoeven KJF, de Jong YEM, Stam P, Lambers H (2005) A genetic analysis of relative growth rate and underlying components in Hordeum spontaneum. Oecologia 142: 360-377
41. Qi X, Stam P, Lindhout P (1998) Use of locus-specific AFLP markers to construct a high-density molecular map in barley. Theor Appl Genet 96: 376-384
42. Rebetzke GJ, Richards RA (1999) Genetic improvement of early vigor in wheat. Aust J Agric Res 50: 291-301
43. Richards RA (2000) Selectable traits to increase crop photosynthesis and yield of grain crops. J Exp Bot 51: 447-458
44. Richards RA, Lukacs Z (2002) Seedling vigor in wheat-sources of variation for genetic and agronomic improvement. Aust J Agric Res 53: 41-50
45. Richards RA, Rebetzke GJ, Condon AG, van Herwaarden AF (2002) Breeding opportunities for increasing the efficiency of water use and crop yield in temperate cereals. Crop Sci 42: 111-121
46. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH, Leroy P, Canal MW (1998) A microsatellite map of wheat. Genetics 149: 2007-2023
47. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018
48. Sakamoto T, Miura K, Itoh H, Tatsumi T, Ueguchi-Tanaka M, Ishiyama K, Kobayashi M, Agrawal GK, Takeda S, Abe K, et al (2004) An overview of gibberellin metabolism enzyme genes and their related mutants in rice. Plant Physiol 134: 1642-1653
49. Schnyder H, Seo S, Rademacher IF, Kübauch W (1990) Spatial distribution of growth rates and of epidermal cell lengths in the elongation zone during leaf development in Lolium perenne L. Planta 181: 423-431
50. Siddique KHM, Tennant D, Perry MW, Belford RK (1990) Water use and water use efficiency of old and modern wheat cultivars in a Mediterranean type environment. Aust J Agric Res 41: 431-447
51. Sourdille P, Cadalen T, Guyomarc'h H, Snape JW, Perretant MR, Charmet G, Boeuf C, Bernard S, Bernard M (2003) An update of the Courtot × Chinese Spring intervarietal molecular marker linkage map for the QTL detection of agronomic traits in wheat. Theor Appl Genet 106: 530-538
52. Tanksley SD, Nelson JC (1996) Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines. Theor Appl Genet 92: 191-203
53. Treymayne M, Richards AJ (2000) Seed weight and seed number affect subsequent fitness in outcrossing and selfing Primula species. New Phytol 148: 127-142
54. Van den Boogaard R, Veneklaas EJ, Peacock J, Lambers H (1996) Relative growth rate, biomass allocation pattern and water use efficiency of three wheat cultivars during early ontogeny as dependent on water availability. Physiol Plant 98: 493-504
55. Van Ooijen JW (1999) LOD significance thresholds for QTL analysis in experimental populations of diploid species. Heredity 83: 613-624
56. Van Ooijen JW, Boer MP, Jansen RC, Maliepaard C (2002) MapQTL Version 4.0, Software for the Calculation of QTL Positions on Genetic Maps. Plant Research International, Wageningen, The Netherlands
57. Van Ooijen JW, Voorrips RE (2001) JoinMap 3.0, Software for the Calculation of Genetic Linkage Maps. Plant Research International, Wageningen, The Netherlands
58. Van Rijn CPE (2001) A physiological and genetic analysis of growth characteristics in Hordeum spontaneum. PhD thesis. Utrecht University, Utrecht, The Netherlands
59. Van Rijn CPE, Heersche I, van Berkel YEM, Nevo E, Lambers H, Poorter H (2000) Growth characteristics in Hordeum spontaneum populations from different habitats. New Phytol 146: 471-481
60. Villar R, Veneklaas EJ, Jordano P, Lambers H (1998) Relative growth rate and biomass allocation in 20 Aegilops (Poaceae) species. New Phytol 140: 425-437
61. Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93: 77-78
62. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Homes M, Frijters A, Pot J, Peleman J, Kuiper M, et al (1995) AFLP; a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414
63. Xiao J, Li J, Grandillo S, Nag Ahn S, Yuan L, Tanksley SD, McCouch SR (1998) Identification of trait-improving quantitative trait loci alleles from a wild rice relative, Oryza rufipogon. Genetics 150: 899-909