Evaluation of the CombiChip Mycobacteria™ Drug-Resistance detection DNA chip for identifying mutations associated with resistance to isoniazid and rifampin in Mycobacterium tuberculosis

Diagnostic Microbiology and Infectious Disease

Volumn 54, Issue 3, 2006, Pages 203-210

  Kim, Soo Young ^a   Park, Yeon Joon ^b   Song, Eunsil ^c   Jang, Hyunjung ^c   Kim, Cheolmin ^d   Yoo, Jinyoung ^a   Kang, Seok Jin ^a  

^a The Catholic University of Korea   (South Korea)

^b The Catholic University of Korea   (South Korea)

^c Institute for Genomic Medicine   (South Korea)

^d Pusan National University School of Medicine   (South Korea)

Author keywords

inhA; Isoniazid; katG 315; M. tuberculosis; Oligonucleotide microchip; Rifampin; rpoB

Indexed keywords

ISONIAZID; OLIGONUCLEOTIDE; RIFAMPICIN;

ANTIBIOTIC RESISTANCE; ARTICLE; CODON; CONTROLLED STUDY; DNA MICROARRAY; DNA SEQUENCE; GENE MUTATION; GENOTYPE; INTERMETHOD COMPARISON; MICROCHIP ANALYSIS; MYCOBACTERIOSIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SENSITIVITY AND SPECIFICITY;

ANTITUBERCULAR AGENTS; CODON; DNA MUTATIONAL ANALYSIS; DNA, BACTERIAL; DRUG RESISTANCE, BACTERIAL; GENES, BACTERIAL; HUMANS; ISONIAZID; MICROBIAL SENSITIVITY TESTS; MUTATION; MYCOBACTERIUM TUBERCULOSIS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMERASE CHAIN REACTION; RIFAMPIN; SENSITIVITY AND SPECIFICITY; TUBERCULOSIS;

EID: 33644634122     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2005.09.014     Document Type: Article

References (22)

1. R.C. Cooksey, B.P. Holloway, M.C. Oldenburg, S. Listenbee, and C.W. Miller Evaluation of the invader assay, a linear signal amplification method, for identification of mutations associated with resistance to rifampin and isoniazid in Mycobacterium tuberculosis Antimicrob. Agents Chemother. 44 2000 1296 1301
2. T.A. Felmlee, Q. Liu, A.C. Whelen, D. Williams, S.S. Sommer, and D.H. Persing Genotypic detection of Mycobacterium tuberculosis rifampin resistance: comparison of single-strand conformation polymorphism and dideoxy fingerprinting J. Clin. Microbiol. 33 1995 1617 1623
3. J.H. Hacia, and F.S. Collins Mutational analysis using oligonucleotide microarrays J. Med. Genet. 36 1999 730 736
4. S.J. Heymann, T.F. Brewer, M.E. Wilson, and H.V. Fineberg The need for global action against multidrug-resistant tuberculosis JAMA 281 1999 2138 2140
5. B.J. Kim, K.H. Lee, B.N. Park, S.J. Kim, E.M. Park, Y.G. Park, G.H. Bai, S.J. Kim, and Y.H. Kook Detection of rifampin-resistant Mycobacterium tuberculosis in sputa by nested PCR-linked single-strand conformation polymorphism and DNA sequencing J. Clin. Microbiol. 39 2001 2610 2617
6. S.Y. Kim, Y.J. Park, W.I. Kim, S.H. Lee, C.L. Chang, S.J. Kang, and C.S. Kang Molecular analysis of isoniazid resistance in Mycobacterium tuberculosis isolates recovered from South Korea Diagn. Microbiol. Infect. Dis. 47 2003 497 502
7. A.S. Lee, I.H. Lim, L.L. Tang, A. Telenti, and S.Y. Wong Contribution of kasA analysis to detection of isoniazid-resistant Mycobacterium tuberculosis in Singapore Antimicrob. Agents Chemother. 43 1999 2087 2089
8. V. Mikhailovich, S. Lapa, D. Gryadunov, A. Sobolev, B. Strizhkov, N. Chernyh, O. Skotnikova, O. Irtuganova, A. Moroz, V. Litvinov, M. Vladimirskii, M. Perelman, L. Chernousova, V. Erokhin, A. Zasedatelev, and A. Mirzabekov Identification of rifampin-resistant Mycobacterium tuberculosis strains by hybridization, PCR, and ligase detection reaction on oligonucleotide microchips J. Clin. Microbiol. 39 2001 2531 2540
9. J.M. Musser Antimicrobial agent resistance in mycobacteria: molecular genetic insights Clin. Microbiol. Rev. 8 1995 496 514
10. I. Nachamkin, C. Kang, and M.P. Weinstein Detection of resistance to isoniazid, rifampin, and streptomycin in clinical isolates of Mycobacterium tuberculosis by molecular methods Clin. Infect. Dis. 24 1997 894 900
11. V. Nikolayevsky, T. Brown, Y. Balabanova, M. Ruddy, I. Fedorin, and F. Drobniewski Detection of mutations associated with isoniazid and rifampin resistance in Mycobacterium tuberculosis isolates from Samara region, Russian Federation J. Clin. Microbiol. 42 2004 4498 4502
12. A.S. Piatek, A. Telenti, M.R. Murray, H. El-Hajj, W.R. Jacobs Jr, F.R. Kramer, and D. Alland Genotypic analysis of Mycobacterium tuberculosis in two distinct populations using molecular beacons: implications for rapid susceptibility testing Antimicrob. Agents Chemother. 44 2000 103 110
13. S. Ramaswarmy, and J.M. Musser Molecular genetic basis of antimicrobial agent resistance in Mycobacterium tuberculosis: 1998 update Tuber. Lung Dis. 79 1998 3 29
14. W. Sougakoff, M. Rodrigue, C. Truffot-Pernot, M. Renard, N. Durin, M. Szpytma, R. Vachon, A. Troesch, and V. Jarlier Use of a high-density DNA probe array for detecting mutations involved in rifampicin resistance in Mycobacterium tuberculosis Clin. Microbiol. Infect. 10 2004 289 294
15. S. Sreevatsan, X. Pan, Y. Zhang, V. Deretic, and J.M. Musser Analysis of the oxyR-ahpC region in isoniazid-resistant and -susceptible Mycobacterium tuberculosis complex organisms recovered from diseased humans and animals in diverse localities Antimicrob. Agents Chemother. 41 1997 600 606
16. A. Telenti, N. Honore, C. Bernasconi, J. March, A. Ortega, B. Heym, H. Takiff, and S.T. Cole Genotypic assessment of isoniazid and rifampin resistance in Mycobacterium tuberculosis: a blind study at reference laboratory level J. Clin. Microbiol. 35 1997 719 723
17. S.V. Tillib, B.N. Strizhkov, and A.D. Mirzabekov Integration of multiple PCR amplifications and DNA mutation analyses by using oligonucleotide microchip Anal. Biochem. 292 2001 155 160
18. A. Troesch, H. Nguyen, C.G. Miyada, S. Desvarenne, T.R. Gingeras, P.M. Kaplan, P. Cros, and C. Mabilat Mycobacterium species identification and rifampin resistance testing with high-density DNA probe arrays J. Clin. Microbiol. 37 1999 49 55
19. A. Van Rie, R. Warren, I. Mshanga, A.M. Jordaan, G.D. van der Spuy, M. Richardson, J. Simpson, R.P. Gie, D.A. Enarson, N. Beyers, P.D. van Helden, and T.C. Victor Analysis for a limited number of gene codons can predict drug resistance of Mycobacterium tuberculosis in a high-incidence community J. Clin. Microbiol. 39 2001 636 641
20. D. Van Soolingen, P.E. de Haas, H.R. van Doorn, E. Kuijper, H. Rinder, and M.W. Borgdorff Mutations at amino acid position 315 of the katG gene are associated with high-level resistance to isoniazid, other drug resistance, and successful transmission of Mycobacterium tuberculosis in the Netherlands J. Infect. Dis. 182 2000 1788 1790
21. S.A. Watterson, S.M. Wilson, M.D. Yates, and F.A. Drobniewski Comparison of three molecular assays for rapid detection of rifampin resistance in Mycobacterium tuberculosis J. Clin. Microbiol. 36 1998 1969 1973
22. J. Yue, W. Shi, J. Xie, Y. Li, E. Zeng, L. Liang, and H. Wang Detection of rifampin-resistant Mycobacterium tuberculosis strains by using a specialized oligonucleotide microarray Diagn. Microbiol. Infect. Dis. 48 2004 47 54