Lymphocyte surface marker genes in fugu

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 1, Issue 1 SPEC. ISS., 2006, Pages 102-108

  Suetake, Hiroaki ^a   Saha, Nil Ratan ^a,b   Araki, Kyosuke ^a,c   Akatsu, Kanako ^a   Kikuchi, Kiyoshi ^a   Suzuki, Yuzuru ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b BENAROYA RESEARCH INSTITUTE   (United States)

^c NIHON UNIVERSITY   (Japan)

Author keywords

CD; Fugu; Immunoglobulin; Lymphocyte

Indexed keywords

ANTIBODY; CD3 ANTIGEN; CD4 ANTIGEN; CD8ALPHA ANTIGEN; IMMUNOGLOBULIN D; IMMUNOGLOBULIN HEAVY CHAIN; IMMUNOGLOBULIN LIGHT CHAIN; IMMUNOGLOBULIN M; LYMPHOCYTE SURFACE MARKER;

B LYMPHOCYTE; CELLULAR DISTRIBUTION; GENE IDENTIFICATION; GENOMICS; INNATE IMMUNITY; LEUKOCYTE; LYMPHOCYTE SUBPOPULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; PUFFER FISH; RELIABILITY; REVIEW; T LYMPHOCYTE;

TAKIFUGU; TAKIFUGU RUBRIPES; TETRAODONTIDAE; VERTEBRATA;

EID: 33644533195     PISSN: 1744117X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cbd.2005.08.002     Document Type: Review

References (84)

1. B.Y. Alabyev S.V. Guselnikov A.M. Najakshin L.V. Mechetina A.V. Taranin CD3ε homologues in the chondrostean fish Acipenser ruthenus Immunogenetics 51 2000 1012-1020
2. B. Alarcon S.C. Ley F. Sanchez-Madrid R.S. Blumberg S.T. Ju M. Fresno C. Terhorst The CD3-γ and CD3-δ subunits of the T cell antigen receptor can be expressed within distinct functional TCR/CD3 complex EMBO J. 10 1991 903-912
3. E. Andersson T. Matsunaga Complete cDNA sequence of a rainbow trout IgM gene and evolution of vertebrate IgM constant domains Immunogenetics 38 1993 243-250
4. S. Aparicio J. Chapman E. Stupka N. Putnam J.M. Chia P. Dehal A. Christoffels S. Rash S. Hoon A. Smit M.D. Gelpke J. Roach T. Oh I.Y. Ho M. Wong C. Detter F. Verhoef P. Predki A. Tay S. Lucas P. Richardson S.F. Smith M.S. Clark Y.J. Edwards N. Doggett A. Zharkikh S.V. Tavtigian D. Pruss M. Barnstead C. Evans H. Baden J. Powell G. Glusman L. Rowen L. Hood Y.H. Tan G. Elgar T. Hawkins B. Venkatesh D. Rokhsar S. Brenner Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes Science 297 2002 1301-1310
5. K. Araki H. Suetake Y. Suzuki Characterization and expression analysis of CD3ε and CD3γ/δ in fugu Takifugu rubripes Immunogenetics 57 2005 158-163
6. W.B. Barbazuk I. Korf C. Kadavi J. Heyen S. Tate E. Wun J.A. Bedell J.D. McPherson S.L. Johnson The syntenic relationship of the zebrafish and human genomes Genome Res. 10 2000 1351-1358
7. Bei, J.X., Suetake, H., Araki, K., Kikuchi, K., Yoshiura, Y., Lin, H.R., Suzuki, Y., in press. Two Interleukin (IL)-15 homologues in fish from two distinct origins. Mol. Immunol.
8. E. Bengten T. Leanderson L. Pilstrom Immunoglobulin heavy chain cDNA from the teleost Atlantic cod (Gadus morhua L.): Nucleotide sequences of secretory and membrane form show an unusual splicing pattern Eur. J. Immunol. 21 1991 3027-3033
9. E. Bengten S.M.A. Quiniou T.B. Stuge T. Katagiri N.W. Miller L.W. Clem G.W. Warr M.W. Wilson The IgH locus of the channel catfish, Ictalurus punctatus, contains multiple constant region gene sequences: Different genes encode heavy chains of membrane and secreted IgD J. Immunol. 169 2002 2488-2497
10. A. Bernot C. Auffray Primary structure and ontogeny of an avian CD3 transcript Proc. Natl. Acad. Sci. U. S. A. 88 1991 2550-2554
11. A. Bernot J. Weissenbach Estimation of the extent of synteny between Tetraodon nigroviridis and Homo sapiens genomes J. Mol. Evol. 59 2004 556-569
12. S. Bird J. Zou T. Kono M. Sakai J.M. Dijkstra C. Secombes Characterisation and expression analysis of interleukin 2 (IL-2) and IL-21 homologues in the Japanese pufferfish, Fugu rubripes, following their discovery by synteny Immunogenetics 56 2005 909-923
13. S. Bird J. Zou R. Savan T. Kono M. Sakai J. Woo C. Secombes Characterisation and expression analysis of an interleukin 6 homologue in the Japanese pufferfish, Fugu rubripes Dev. Comp. Immunol. 29 2005 775-789
14. S. Brenner B. Venkatesh W.H. Yap C.F. Chou A. Tay S. Ponniah Y. Wang Y.H. Tan Conserved regulation of the lymphocyte-specific expression of lck in the Fugu and mammals Proc. Natl. Acad. Sci. U. S. A. 99 2002 2936-2941
15. G.J. Clark G.H. Tobias G.A. Pietersz B.J. Classon I.D. Walker I.F. McKenzie N.J. Deacon Isolation of a cDNA clone for the murine CD4 antigen Trans. Proc. 20 1988 45-48
16. M.S. Clark Y.J. Edwards D. Peterson S.W. Clifton A.J. Thompson M. Sasaki Y. Suzuki K. Kikuchi S. Watabe K. Kawakami S. Sugano G. Elgar S.L. Johnson Fugu ESTs: New resources for transcription analysis and genome annotation Genome Res. 13 2003 2747-2753
17. B.J. Classon J. Tsagaratos I.F. McKenzie I.D. Walker Partial primary structure of the T4 antigens of mouse and sheep: Assignment of intrachain disulfide bonds Proc. Natl. Acad. Sci. U. S. A. 83 1986 4499-4503
18. H. Clevers B. Alarcon T. Wileman C. Terhorst The T cell receptor/CD3 complex: A dynamic protein ensemble Annu. Rev. Immunol. 6 1988 629-662
19. N. Danilova V.S. Hohman E.H. Kim L.A. Steiner Immunoglobulin variable-region diversity in the zebrafish Immunogenetics 52 2000 81-91
20. N. Danilova J. Bussmann K. Jekosch L.A. Steiner The immunoglobulin heavy-chain locus in zebrafish: Identification and expression of a previously unknown isotype, immunoglobulin Z Nat. Immunol. 6 2005 295-302
21. V.P. Dave Z. Cao C. Browne B. Alarcon G. Fernandez-Miguel J. Lafaille A. de la Hera S. Tonegawa D.J. Kappes CD3δ deficiency arrests development of the αβ but not the γδ T cell lineage EMBO J. 16 1997 1360-1370
22. J.M. Davie W.E. Paul Receptors on immunocompetent cells: IV. Direct measurement of avidity of cell receptors and cooperative binding of multivalent ligands J. Exp. Med. 135 1972 643-669
23. J.M. Dijkstra T. Somamoto L. Moore I. Hordvik M. Ototake U. Fischer Identification and characterization of a second CD4-like gene in teleost fish Mol. Immunol. 2005 (Electronic publication ahead of print)
24. A.M. Dumont-Drieux A. De Parseval M. Heiber P. Salmon G. Pancino P. Sonigo D. Klatzmann Unusual amino acid sequence of the second Ig-like domain of the feline CD4 protein AIDS Res. Hum. Retrovir. 8 1992 1581-1591
25. R.C. Dzialo M.D. Cooper An amphibian homologue of the mammalian CD3 γ and δ genes Eur. J. Immunol. 27 1997 1640-1647
26. W. Ellmeier S. Sawada D.R. Littman The regulation of CD4 and CD8 coreceptor gene expression during T cell development Annu. Rev. Immunol. 17 1999 523-554
27. M. Exley C. Terhorst T. Wileman Structure assembly and intracellular transport of the T cell receptor for antigen Semin. Immunol. 3 1991 283-297
28. Fischer, U., Utke, K., Somamoto, T., Kollner, B., Ototake, M., Nakanishi, T., in press. Cytotoxic activities of fish leucocytes. Fish Shellfish Immunol. 20, 209-226.
29. A. Fomsgaard V.M. Hirsch P.R. Johnson Cloning and sequences of primate CD4 molecules: Diversity of the cellular receptor for simian immunodeficiency virus/human immunodeficiency virus Eur. J. Immunol. 22 1992 2973-2981
30. S.H. Ghaffari C.J. Lobb Cloning and sequence analysis of channel catfish heavy chain cDNA indicate phylogenetic diversity within the IgM immunoglobulin family J. Immunol. 142 1989 1356-1365
31. T.W. Göbel M. Fluri Identification and analysis of the chicken CD3ε gene Eur. J. Immunol. 27 1997 194-198
32. S.V. Guselnikov A.M. Najakshin A.V. Taranin Fugu rubripes possesses genes for the entire set of the ITAM-bearing transmembrane signal subunits Immunogenetics 55 2003 472-479
33. K. Gustafsson S. Germana T.M. Sundt III D.H. Sachs C. LeGuern Extensive allelic polymorphism in the CDR2-like region of the miniature swine CD4 molecule J. Immunol. 151 1993 1365-1370
34. B.F. Hague S. Sawasdikosol T.J. Brown K. Lee D.P. Recker T.J. Kindt CD4 and its role in infection of rabbit cell lines by human immunodeficiency virus type 1 Proc. Natl. Acad. Sci. U. S. A. 89 1992 7963-7967
35. M.C. Haks P. Krimpenfort J. Borst A.M. Kruisbeek The CD3γ chain is essential for development of both the TCRαβ and TCRγδ lineages EMBO J. 17 1998 1871-1882
36. M. Halling-Brown C. Sansom D.S. Moss G. Elgar Y.J. Edwards A Fugu-human genome synteny viewer: Web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes Nucleic Acids Res. 32 2004 2618-2622
37. J.D. Hansen P. Strassburger Description of an ectothermic TCR coreceptor, CD8α, in rainbow trout J. Immunol. 164 2000 3132-3139
38. J.D. Hansen A.G. Zapata Lymphocyte development in fish and amphibians Immunol. Rev. 166 1998 199-220
39. J.D. Hansen E.D. Landis R.B. Phillips Discovery of a unique Ig heavy-chain isotype (IgT) in rainbow trout: Implications for a distinctive B cell developmental pathway in teleost fish Proc. Natl. Acad. Sci. U. S. A. 102 2005 6919-6924
40. I. Hirono B-H. Nam J. Enomoto K. Uchino T. Aoki Cloning and characterization of a cDNA encoding Japanese flounder Paralichthys olivaceus IgD Fish Shellfish Immunol. 15 2003 63-70
41. I. Hordvik Identification of a novel immunoglobulin δ transcript and comparative analysis of the genes encoding IgD in Atlantic salmon and Atlantic halibut Mol. Immunol. 39 2002 85-91
42. I. Hordvik A.M. Voie J. Glette R. Male C. Endresen Cloning and sequence analysis of two isotypic IgM heavy chain genes from Atlantic salmon, Salmo salar L. Eur. J. Immunol. 22 1992 2957-2962
43. I. Hordvik J. Thevarajan I. Samdal N. Bastani B. Krossøy Molecular cloning and phylogenetic analysis of the Atlantic salmon Immunoglobulin D gene Scand. J. Immunol. 50 1999 202-210
44. M.O. Huising R.J. Stet H.F. Savelkoul B.M. Verburg-van Kemenade The molecular evolution of the interleukin-1 family of cytokines; IL-18 in teleost fish Dev. Comp. Immunol. 28 2004 395-413
45. D. Igawa M. Sakai R. Savan An expected discovery of two interferon gamma-like genes along with interleukin (IL)-22 and -26 from teleost: IL-22 and-26 genes have been described for the first time outside mammals Mol. Immunol. 2005 (Electronic publication ahead of print)
46. O. Jaillon J.M. Aury F. Brunet J.L. Petit N. Stange-Thomann E. Mauceli L. Bouneau C. Fischer C. Ozouf-Costaz A. Bernot S. Nicaud D. Jaffe S. Fisher G. Lutfalla C. Dossat B. Segurens C. Dasilva M. Salanoubat M. Levy N. Boudet S. Castellano V. Anthouard C. Jubin V. Castelli M. Katinka B. Vacherie C. Biemont Z. Skalli L. Cattolico J. Poulain V. De Berardinis C. Cruaud S. Duprat P. Brottier J.P. Coutanceau J. Gouzy G. Parra G. Lardier C. Chapple K.J. McKernan P. McEwan S. Bosak M. Kellis J.N. Volff R. Guigo M.C. Zody J. Mesirov K. Lindblad-Toh B. Birren C. Nusbaum D. Kahn M. Robinson-Rechavi V. Laudet V. Schachter F. Quetier W. Saurin C. Scarpelli P. Wincker E.S. Lander J. Weissenbach H.R. Crollius Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype Nature 431 2004 946-957
47. R. Koskinen U. Lamminmaki C.A. Tregaskes J. Salomonsen J.R. Young O. Vainio Cloning and modeling of the first nonmammalian CD4 J. Immunol. 162 1999 4115-4121
48. U.H. Lee H.J. Pack J.W. Do J.D. Bang H.R. Cho B.K. Ko C.W. Nam D.H. Choi H.K. Yu C.S. Jeong I.S. Han J.W. Park Flounder (Paralichthys olivaceus) cDNA encoding a secreted immunoglobulin M heavy chain Fish Shellfish Immunol. 11 2001 537-540
49. G.W. Litman M.K. Anderson J.P. Rast Evolution of antigen binding receptors Annu. Rev. Immunol. 17 1999 109-147
50. G. Lutfalla H.R. Crollius N. Stange-Thomann O. Jaillon K. Mogensen D. Monneron Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: The class II cytokine receptors and their ligands in mammals and fish BMC Genomics 4 2003 29
51. P.J. Maddon D.R. Littman M. Godfrey D.E. Maddon L. Chess R. Axel The isolation and nucleotide sequence of a cDNA encoding the T cell surface protein T4: A new member of the immunoglobulin gene family Cell 42 1985 93-104
52. K.F. Milde G.E. Conner D.H. Mintz R. Alejandro Primary structure of the canine CD4 antigen Biochim. Biophys. Acta 1172 1993 315-318
53. T. Miyadai M. Ootani D. Tahara M. Aoki K. Saitoh Monoclonal antibodies recognising serum immunoglobulins and surface immunoglobulin-positive cells of puffer fish, torafugu (Takifugu rubripes) Fish Shellfish Immunol. 17 2004 211-222
54. L.J. Moore T. Somamoto K.K. Lie J.M. Dijkstra I. Hordvik Characterisation of salmon and trout CD8α and CD8β Mol. Immunol. 42 2005 1225-1234
55. T. Nakanishi U. Fischer J.M. Dijkstra S. Hasegawa T. Somamoto N. Okamoto M. Ototake Cytotoxic T cell function in fish Dev. Comp. Immunol. 26 2002 131-139
56. B.H. Nam E. Yamamoto I. Hirono T. Aoki A survey of expressed genes in the leukocytes of Japanese flounder, Paralichthys olivaceus, infected with Hirame rhabdovirus Dev. Comp. Immunol. 24 2000 13-24
57. B.H. Nam I. Hirono T. Aoki The four TCR genes of teleost fish: The cDNA and genomic DNA analysis of Japanese flounder (Paralichthys olivaceus) TCR α-, β-, γ-, and δ-chains J. Immunol. 170 2003 3081-3090
58. J. Norimine T. Miyazawa Y. Kawaguchi Y. Tohya C. Kai T. Mikami A cDNA encoding feline CD4 has a unique repeat sequence downstream of the V-like region Immunology 75 1992 74-79
59. Z. Pancer W.E. Mayer J. Klein M.D. Cooper Prototypic T cell receptor and CD4-like coreceptor are expressed by lymphocytes in the agnathan sea lamprey Proc. Natl. Acad. Sci. U. S. A. 101 2004 13273-13278
60. C.I. Park I. Hirono J. Enomoto B.H. Nam T. Aoki Cloning of Japanese flounder Paralichthys olivaceus CD3 cDNA and gene, and analysis of its expression Immunogenetics 53 2001 130-135
61. C.I. Park I. Hirono T. Aoki Molecular characterization of the Japanese flounder, Paralichthys olivaceus, CD3ε and evolution of the CD3 cluster Dev. Comp. Immunol. 29 2005 123-133
62. J.R. Parnes Molecular biology and function of CD4 and CD8 Adv. Immunol. 44 1989 265-311
63. S. Partula J. Schwager S. Timmusk L. Pilstrom J. Charlemagne A second immunoglobulin light chain isotype in the rainbow trout Immunogenetics 45 1996 44-51
64. S. Partula Surface markers of fish T-cells Fish Shell. Immunol. 9 1999 241-257
65. M.L. Rise K.R. von Schalburg G.D. Brown M.A. Mawer R.H. Devlin N. Kuipers M. Busby M. Beetz-Sargent R. Alberto A.R. Gibbs P. Hunt R. Shukin J.A. Zeznik C. Nelson S.R. Jones D.E. Smailus S.J. Jones J.E. Schein M.A. Marra Y.S. Butterfield J.M. Stott S.H. Ng W.S. Davidson B.F. Koop Development and application of a salmonid EST database and cDNA microarray: Data mining and interspecific hybridization characteristics Genome Res. 14 2004 478-490
66. T.A. Romano S.H. Ridgway D.L. Felten V. Quaranta Molecular cloning and characterization of CD4 in an aquatic mammal, the white whale Delphinapterus leucas Immunogenetics 49 1999 376-383
67. A. Ropars A.M. Bautz C. Dournon Sequencing and expression of the CD3 γ/δ mRNA in Pleurodeles waltl (urodele amphibian) Immunogenetics 54 2002 130-138
68. D.A. Ross M.R. Wilson N.W. Miller L.W. Clem G.W. Warr Evolutionary variation of immunoglobulin μ heavy chain RNA processing pathways: origins, effects, and implications Immunol. Rev. 166 1998 143-151
69. N.R. Saha H. Suetake Y. Suzuki Characterization and expression of the immunoglobulin light chain in the fugu: Evidence of a solitaire type Immunogenetics 56 2004 47-55
70. N.R. Saha H. Suetake K. Kikuchi Y. Suzuki Fugu immunoglobulin D: A highly unusual gene with unprecedented duplication in its constant region Immunogenetics 56 2004 438-447
71. N.R. Saha H. Suetake Y. Suzuki Analysis and characterization of the expression of the secretory and membrane forms of IgM heavy chains in the pufferfish, Takifugu rubripes Mol. Immunol. 42 2005 113-124
72. L. Shen T.B. Stuge H. Zhou M. Khayat K.S. Barker S.M. Quiniou M. Wilson E. Bengten V.G. Chinchar L.W. Clem N.W. Miller Channel catfish cytotoxic cells: A mini-review Dev. Comp. Immunol. 26 2002 141-149
73. T. Somamoto Y. Yoshiura T. Nakanishi M. Ototake Molecular cloning and characterization of two types of CD8α from ginbuna crucian carp, Carassius auratus langsdorfii Dev. Comp. Immunol. 29 2005 693-702
74. J. Stenvik T.Ø. Jørgensen Immunoglobulin D (IgD) of Atlantic cod has a unique structure Immunogenetics 51 2000 452-461
75. H. Suetake K. Araki Y. Suzuki Cloning, expression, and characterization of fugu CD4, the first ectothermic animal CD4 Immunogenetics 56 2004 368-374
76. C.A. Tregaskes F.K. Kong E. Paramithiotis C.L. Chen M.J. Ratcliffe T.F. Davison J.R. Young Identification and analysis of the expression of CD8 αβ and CD8 αα isoforms in chickens reveals a major TCR-γδ CD8 αβ subset of intestinal intraepithelial lymphocytes J. Immunol. 154 1995 4485-4494
77. F. Triebel LAG-3: A regulator of T-cell and DC responses and its use in therapeutic vaccination Trends Immunol. 24 2003 619-622
78. N.L. Warner P. Byrt G.L. Ada Blocking of the lymphocyte antigen receptor site with anti-immunoglobulin sera in vitro Nature 226 1970 942-943
79. M.R. Wilson D.A. Ross N.W. Miller L.W. Clem D.L. Middleton G.W. Warr Alternate pre-mRNA processing pathways in the production of membrane IgM heavy chains in holostean fish Dev. Comp. Immunol. 19 1995 165-177
80. M. Wilson E. Bengten N.W. Miller L.W. Clem L. Du Pasquier G.W. Warr A novel chimeric Ig heavy chain from a teleost fish shares similarities to IgD Proc. Natl. Acad. Sci. U. S. A. 94 1997 4593-4597
81. Y. Yoshiura I. Kiryu A. Fujiwara H. Suetake Y. Suzuki T. Nakanishi M. Ototake Identification and characterization of Fugu orthologues of mammalian interleukin-12 subunits Immunogenetics 55 2003 296-306
82. Y. Zhao I. Kacskovics Q. Pan D.A. Liberles J. Geli S.K. Davis H. Rabbani L. Hammarstrom Artiodactyl IgD: The missing link J. Immunol. 169 2002 4408-4416
83. J. Zou M.S. Clark C.J. Secombes Characterisation, expression and promoter analysis of an interleukin 10 homologue in the puffer fish, Fugu rubripes Immunogenetics 55 2003 325-335
84. J. Zou Y. Yoshiura J.M. Dijkstra M. Sakai M. Ototake C. Secombes Identification of an interferon gamma homologue in Fugu, Takifugu rubripes Fish Shellfish Immunol. 17 2004 403-409