Genetic diversity of respiratory syncytial virus isolated during an epidemic period from children of Northeastern Brazil

Journal of Medical Virology

Volumn 74, Issue 1, 2004, Pages 156-160

  Moura, Fernanda Edna Araújo ^a   Blanc, Andrea ^b   Frabasile, Sandra ^b   Delfraro, Adriana ^b   De Sierra, María José ^b   Tome, Lorena ^b   Ramos, Eduardo Antônio Gonçalves ^a   Siqueira, Marilda Mendonça ^a   Arbiza, Juan ^a,b  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b UNIVERSIDAD DE LA REPÚBLICA   (Uruguay)

Author keywords

Genetic diversity; RSV infections; Salvador, Brazil

Indexed keywords

UNCLASSIFIED DRUG; VIRUS G PROTEIN; VIRUS PROTEIN; VIRUS RNA;

ANTIGEN DETECTION; ARTICLE; BRAZIL; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; EPIDEMIC; GENETIC DISTANCE; GENETIC VARIABILITY; GENOTYPE; HUMAN; IMMUNOFLUORESCENCE; INFANT; LOWER RESPIRATORY TRACT INFECTION; NASOPHARYNX; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRESCHOOL CHILD; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; VIRUS INFECTION; VIRUS ISOLATION; VIRUS STRAIN;

ANTIGENS, VIRAL; BRAZIL; CHILD, PRESCHOOL; EPIDEMIOLOGY, MOLECULAR; GENES, VIRAL; GENOTYPE; GEOGRAPHY; HUMANS; INFANT; INFANT, NEWBORN; MOLECULAR SEQUENCE DATA; NASOPHARYNX; PHYLOGENY; RESPIRATORY SYNCYTIAL VIRUS INFECTIONS; RESPIRATORY SYNCYTIAL VIRUSES; SEQUENCE ANALYSIS; VARIATION (GENETICS); VIRAL PROTEINS;

HUMAN RESPIRATORY SYNCYTIAL VIRUS; HYDRANGEA RINGSPOT VIRUS; RESPIRATORY SYNCYTIAL VIRUS; RICE STRIPE VIRUS;

EID: 3342943323     PISSN: 01466615     EISSN: None     Source Type: Journal    
DOI: 10.1002/jmv.20159     Document Type: Article

References (41)

1. Anderson LJ, Hierholzer JC, Tsou C, Hendry RM, Fernie BN, Stone Y, McIntosh K. 1985. Antigenic characterisation of respiratory syncytial virus strains with monoclonal antibodies. J Infect Dis 151:626-633.
2. Arbiza J, Delfraro A, Frabasile S, Ruchansky D, Vitureira N, de Sierra MJ, Berois M, Blanc A, Facal L, Negro C, Colina R, Hortal M, Russi JC. 2003. Variable dominance of respiratory syncytial virus groups A and B in Uruguay during fourteen consecutive years (1988-2001). Virus Rev Res 8:35-41.
3. Cane PA. 2001. Molecular epidemiology of respiratory syncytial virus. Rev Med Virol 11:103-116.
4. Cane PA, Pringle CR. 1991. Respiratory syncytial virus heterogeneity during an epidemic analysis by limited nucleotide sequencing (SH gene) and restriction mapping (N gene). J Gen Virol 27:349-357.
5. Cane PA, Pringle CR. 1992. Molecular epidemiology of respiratory syncytial virus: Rapid identification of subgroup A lineages. J Virol Methods 40:297-306.
6. Cane PA, Pringle CR. 1995a. Evolution of subgroup A respiratory syncytial virus: Evidence for progressive accumulation of amino acid changes in the attachment protein. J Virol 69:2918-2925.
7. Cane PA, Pringle CR. 1995b. Molecular epidemiology of human respiratory syncytial virus. Semin Virol 6:371-378.
8. Cane PA, Mathews DA, Pringle CR. 1992. Analysis of relatedness of subgroup A respiratory syncytial viruses isolated world-wide. Virus Res 25:15-22.
9. Carballal G, Videla C, Sequeira M, Mistchenko A, Requeijo P, Arbiza J. 2000. Respiratory syncytial virus: Changes in prevalence of subgroups A and B among Argentinean children, 1990-1996. J Med Virol 61:275-279.
10. Checon RE, Siqueira MM, Lugon AK, Portes S, Dietze R. 2002. Seasonal pattern of respiratory syncytial virus in a region with a tropical climate in Southeastern Brazil. Am Trop Med Hyg 67:490-491.
11. Cintra OAL, Owe MA, Machado AA, Cerwi MC, Figueiredo LT, Rocha GM, Siqueira MM, Arruda E. 2001. Occurrence and severity of infections caused by subgroup A and B respiratory syncytial virus in children in Southeast Brazil. J Med Virol 65:408-412.
12. Englund JAL, Anderson LJ, Rhame FS. 1991. Nosocomial transmission of respiratory syncytial virus in immunocompromised adults. J Clin Microbiol 29:115-119.
13. Falsey AR, Cunningham CK, Barker WH, Kouides RW, Yuen JB, Menegus M, Weiner LB, Bonville CA, Bets RF. 1995. Respiratory syncytial virus and influenza A infections in the hospitalised elderly. J Infect Dis 172:389-394.
14. Frabasile S, Delfraro A, Facal L, Videla C, Galiano M, de Sierra MJ, Ruchanscky D, Vitureira N, Berois M, Carballal G, Russi J, Arbiza J. 2003. Antigenic and genetic variability of human respiratory syncytial viruses (group A) isolated in Uruguay and Argentina, 1993-2001. J Med Virol 71:305-312.
15. Garcia O, Martin M, Dopazo J, Arbiza J, Frabasile S, Russi J, Hortal M, Perez-Breña P, Martinez I, Garcia-Barreno B, Melero JA. 1994. Evolutionary pattern of human respiratory syncytial virus (subgroup A): Cocirculating lineages and correlation of genetic and antigenic changes in the G glycoprotein. J Virol 68:5448-5459.
16. Higgins DG, Sharp PM. 1988. CLUSTAL: A package for performing multiple sequence alignment on a microcomputer. Gene 73:237-244.
17. Johnson PR, Spriggs MK, Olmsted RA, Collins PL. 1987. The G glycoprotein of human respiratory syncytial viruses of subgroups A and B: Extensive sequence divergence between antigenically related proteins. Proc Natl Acad Sci 84:5625-5629.
18. Karron RA, Buonagurio DA, Georgia AF, Whitehead SS, Adamas JE. 1997. Respiratory syncytial virus (RSV) SH and G proteins are not essential for viral replication in vitro: Clinical evaluation and molecular characterization of a cold-passaged, attenuated RSV subgroup B mutant. Proc Natl Acad Sci USA 94:13961-13966.
19. Kumar S, Tamura K, Jakobsen IB, Nei M. 2001. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 12:1244-1245.
20. Madhi SA, Venter M, Alexandra R, Lewis H, Kara Y, Karshagen WF, Greef M, Lassen C. 2003. Respiratory syncytial virus associated illness in high-risk children and national characterisation of the circulating virus genotype in South Africa. J Clin Virol 27:180-189.
21. Martínez I, Valdés O, Delfraro A, Arbiza J, Russi J, Melero JA. 1999. Evolutionary pattern of the G glycoprotein of human respiratory syncytial virus from antigenic group B: The use of alternative termination codons and lineage diversification. J Gen Virol 80:125-130.
22. Melero JA, García-Barreno B, Martínez I, Pringle CR, Cane PA. 1997. Antigenic structure, evolution and immunobiology of human respiratory syncytial virus attachment (G) protein. J Gen Virol 78:2411-2418.
23. Mello WA, Silva C. 1992. Epidemiological aspects of RSV subgroups in Belém, Brazil. Boletin Latino-Americano 1:8.
24. Moura FEA, Borges LC, Souza LSF, Ribeiro DH, Siqueira MM, Ramos EAG. 2003a. Estudo de infecções respiratórias agudas virais em crianças atendidas em um centro pediátrico em Salvador. (BA). J Bras Pat Med Lab 39:369-376.
25. Moura FEA, Borges LC, Portes SAR, Ramos EAG, Siqueira MM. 2003b. Respiratory syncytial virus infections during an epidemic period in Salvador, Brazil. Viral antigenic group analysis and description of clinical and epidemiological aspects. Mem Inst Oswaldo Cruz 98:739-743.
26. Mufson MA, Örvell C, Rafnar B, Morrby E. 1985. Two distinct subtypes of human respiratory syncytial virus. J Gen Virol 66:2111-2124.
27. Nascimento JP, Siqueira MM, Sutmoller F, Krawczuk MM, Farias V, Ferreira V, Rodrigues MJ. 1991. Longitudinal study of acute respiratory diseases in Rio de Janeiro: Occurrence of respiratory viruses during four consecutive years. Rev Inst Med Trop S. Paulo 33:287-296.
28. Peret TC, Hall CB, Scnabel KC, Golub JA, Anderson LJ. 1998. Circulation patterns of genetically distinct group A and B strains of human respiratory syncytial virus in a community. J Gen Virol 79:2221-2229.
29. Peret TC, Hall CB, Hammond GW, Piedra PA, Storch GA, Sullender WM, Tsou C, Anderson LJ. 2000. Circulation patterns of group A and B human respiratory syncytial virus genotypes in 5 communities in North America. J Infect Dis 181:1891-1896.
30. Roca A, Loscertales MP, Quintó L, Pérez-Brena P, Vaz N, Alonso PL, Saiz JC. 2001. Genetic variability among group A and B respiratory syncytial viruses in Mozambique: Identification of a new cluster of group B isolates. J Gen Virol 82:103-111.
31. Selwyn BJ. 1990. The epidemiology of acute respiratory tract infection in Young children: Comparison of findings from several developing countries. Rev Infect Dis 12:S870-S888.
32. Siqueira MM, Nascimento JP, Anderson LJ. 1991. Antigenic characterization of respiratory syncytial virus group A and B isolates in Rio de Janeiro, Brazil. J Clin Microbiol 29:557-559.
33. Straliotto SM, Nestor SM, Siqueira MM. 2001. Respiratory syncytial virus group A and B in Porto Alegre, Brazil, from 1990 to 1995 and 1998. Mem Inst Oswaldo Cruz 96:155-158.
34. Straliotto SM, Siqueira MM, Muller RL, Fischer GB, Cunha ML, Nestor SM. 2002. Viral etiology of acute respiratory infections among children in Porto Alegre, RS, Brazil. Rev Soc Bras Med Trop 35:283-291.
35. Sullender WM. 2000. Respiratory syncytial virus genetic and antigenic diversity. Clin Microbiol Rev 13:1-15.
36. Swofford DL. 2000. PAUP*: Phylogenetic analysis using parsimony (and other methods), Vol. 4.0b4a. Sunderland, Massachusetts: Sinauer Associates, Inc. Publishers.
37. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882.
38. Venter M, Madhi SA, Tiemssen CT, Schoub BD. 2001. Genetic diversity and molecular epidemiology of respiratory syncytial virus over four consecutive seasons in South Africa: Identification of new subgroup A and B genotypes. J Gen Virol 82:2117-2124.
39. Venter M, Collinson M, Schoub B. 2002. Molecular epidemiological analysis of community circulating respiratory syncytial virus in rural South Africa: Comparison of viruses and genotypes responsible for different disease manifestations. J Med Virol 68:452-461.
40. Vieira SE, Stewien KE, Queiroz DA, Durigon EL, Török TJ, Anderson LJ, Miyao CR, Hein N, Botosso VF, Pahl MM, Gilio AE, Ejzenberg B, Okay Y. 2001. Clinical patterns and seasonal trends in respiratory syncytial virus hospitalizations in São Paulo, Brazil. Rev Inst Med Trop São Paulo 43:125-131.
41. Weber MW, Dackour R, Usen S, Schineider G, Adegbola RA, Cane PA, Jaffar S, Milligan P, Greenwood BM, Whittle H, Mulholland K. 1998. The clinical spectrum of respiratory syncytial virus disease in the Gambia. Pediatr Infect Dis J 17:224-230.