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Volumn 80, Issue 4-5, 2004, Pages 231-241

Accelerating Gene Regulatory Network Modeling Using Grid-Based Simulation

Author keywords

Computational biology; gene regulatory networks; grid based simulation; performance model

Indexed keywords

ALGORITHMS; COMPUTATIONAL COMPLEXITY; DISTRIBUTED COMPUTER SYSTEMS; GENES; MATHEMATICAL MODELS; MOLECULAR BIOLOGY;

EID: 3342938451     PISSN: 00375497     EISSN: None     Source Type: Journal    
DOI: 10.1177/0037549704045051     Document Type: Article
Times cited : (6)

References (25)
  • 4
    • 0033782304 scopus 로고    scopus 로고
    • Modeling transcriptional control in gene networks: Methods, recent results, and future directions
    • [4] Smolen, P., D. A. Baxter, and J. H. Byrne. 2000. Modeling transcriptional control in gene networks: Methods, recent results, and future directions. Bulletin of Mathematical Biology 62: 247-292.
    • (2000) Bulletin of Mathematical Biology , vol.62 , pp. 247-292
    • Smolen, P.1    Baxter, D.A.2    Byrne, J.H.3
  • 5
    • 0032485809 scopus 로고    scopus 로고
    • Modeling M-phase control in Xenopus oocyte extracts: The surveillance mechanism for unreplicated DNA
    • [5] Marlovits, G., C. J. Tyson, B. Novak, and J. J. Tyson. 1998. Modeling M-phase control in Xenopus oocyte extracts: The surveillance mechanism for unreplicated DNA. Biophysical Chemistry 72: 169-184.
    • (1998) Biophysical Chemistry , vol.72 , pp. 169-184
    • Marlovits, G.1    Tyson, C.J.2    Novak, B.3    Tyson, J.J.4
  • 6
    • 0027451906 scopus 로고
    • Modeling the cell-division cycle: M-phase trigger, oscillations, and size control
    • [6] Novak, B., and J. J. Tyson. 1993. Modeling the cell-division cycle: M-phase trigger, oscillations, and size control. Journal of Theoretical Biology 165: 101-134.
    • (1993) Journal of Theoretical Biology , vol.165 , pp. 101-134
    • Novak, B.1    Tyson, J.J.2
  • 8
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
    • [8] Arkin, A., J. Ross, and H. H. McAdams. 1998. Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149: 1633-1648.
    • (1998) Genetics , vol.149 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 9
    • 0342506826 scopus 로고    scopus 로고
    • Intracellular kinetics of a growing virus: A genetically structured simulation for bacteriophage T7
    • [9] Endy, D., D. Kong, and J.Yin. 1997. Intracellular kinetics of a growing virus: A genetically structured simulation for bacteriophage T7. Biotechnology and Bioengineering 55: 375-389.
    • (1997) Biotechnology and Bioengineering , vol.55 , pp. 375-389
    • Endy, D.1    Kong, D.2    J.Yin3
  • 10
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • [10] Gillespie, D. T. 1977. Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81: 2340-2361.
    • (1977) Journal of Physical Chemistry , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 11
    • 0001144902 scopus 로고    scopus 로고
    • Efficient exact stochastic simulation of chemical systems with many species and many channels
    • [11] Gibson, M. A., and J. Bruck. 2000. Efficient exact stochastic simulation of chemical systems with many species and many channels. Journal of Physical Chemistry A 104: 1876-1889.
    • (2000) Journal of Physical Chemistry A , vol.104 , pp. 1876-1889
    • Gibson, M.A.1    Bruck, J.2
  • 13
    • 0035933994 scopus 로고    scopus 로고
    • Approximate accelerated stochastic simulation of chemically reacting systems
    • [13] Gillespie, D. T. 2001. Approximate accelerated stochastic simulation of chemically reacting systems. Journal of Chemical Physics 115 (4): 1716-1733.
    • (2001) Journal of Chemical Physics , vol.115 , Issue.4 , pp. 1716-1733
    • Gillespie, D.T.1
  • 14
    • 0035905782 scopus 로고    scopus 로고
    • Modeling cellular behaviour
    • [14] Endy, D., and R. Brent. 2001. Modeling cellular behaviour. Nature 409: 391-395.
    • (2001) Nature , vol.409 , pp. 391-395
    • Endy, D.1    Brent, R.2
  • 17
    • 84990637885 scopus 로고
    • PVM: A framework for parallel distributed computing
    • [17] Sunderam, V. S. 1990. PVM: A framework for parallel distributed computing. Currency: Practice and Experience 2 (4): 315-330.
    • (1990) Currency: Practice and Experience , vol.2 , Issue.4 , pp. 315-330
    • Sunderam, V.S.1
  • 22
    • 84976676590 scopus 로고
    • Parallel discrete event simulation
    • [22] Fujimoto, R. M. 1990. Parallel discrete event simulation. Communications of the ACM 33 (10): 30-53.
    • (1990) Communications of the ACM , vol.33 , Issue.10 , pp. 30-53
    • Fujimoto, R.M.1
  • 23
    • 3343003638 scopus 로고    scopus 로고
    • Performance tradeoffs for emulation, hardware acceleration, and simulation
    • edited by New York: Kluwer Academic
    • [23] Peterson, G. D. 2001. Performance tradeoffs for emulation, hardware acceleration, and simulation. In System on chip methodologies and design languages, edited by Jean Mermet. New York: Kluwer Academic.
    • (2001) System on chip methodologies and design languages
    • Peterson, G.D.1    Jean Mermet2
  • 24
    • 0347069858 scopus 로고    scopus 로고
    • Acyl-homoserine lactone quorum sensing in bacteria
    • [24] Greenberg, E. P. 2000. Acyl-homoserine lactone quorum sensing in bacteria. Journal of Microbiology 38: 117-121.
    • (2000) Journal of Microbiology , vol.38 , pp. 117-121
    • Greenberg, E.P.1
  • 25
    • 0035070998 scopus 로고    scopus 로고
    • Quorum sensing as an integral component of gene regulatory networks in Gram-negative bacteria
    • [25] Withers, H., S. Swift, and P. Williams. 2001. Quorum sensing as an integral component of gene regulatory networks in Gram-negative bacteria. Current Opinions on Microbiology 4: 186-193.
    • (2001) Current Opinions on Microbiology , vol.4 , pp. 186-193
    • Withers, H.1    Swift, S.2    Williams, P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.