Analysis of Noise in Quorum Sensing

OMICS A Journal of Integrative Biology

Volumn 7, Issue 3, 2003, Pages 317-334

  Cox, Chris D ^a,b   Peterson, Gregory D ^b   Allen, Michael S ^b,c   Lancaster, Joseph M ^b   McCollum, James M ^b   Austin, Derek ^b,c   Yan, Ling ^a,b   Sayler, Gary S ^b   Simpson, Michael L ^a,b,c  

^a University of Tennessee Knoxville   (United States)

^b UNIVERSITY OF TENNESSEE   (United States)

^c OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS; ANALYTIC METHOD; ARTICLE; BACTERIOPHAGE; BACTERIOPLANKTON; BIOLUMINESCENCE; CALCULATION; CELL COMMUNICATION; CELL DENSITY; DENSITY; FEEDBACK SYSTEM; FREQUENCY ANALYSIS; GENE FREQUENCY; GENE FUNCTION; GENE STRUCTURE; GENE SWITCHING; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; MATHEMATICAL ANALYSIS; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; NOISE; NONHUMAN; POWER SPECTRUM; PRIORITY JOURNAL; PROTEIN SYNTHESIS; QUORUM SENSING; REACTION ANALYSIS; REGULATOR GENE; SIGNAL TRANSDUCTION; SIMULATION; SIMULATOR; STOCHASTIC MODEL; STRUCTURE ACTIVITY RELATION; VIBRIO FISCHERI;

BACTERIA (MICROORGANISMS); PHOTOBACTERIUM; UNCULTURED MARINE BACTERIUM; VIBRIO; VIBRIO FISCHERI;

EID: 0142106505     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/153623103322452422     Document Type: Article

References (26)

1. ARKIN, A., ROSS, J., and McADAMS, H.H. (1998). Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149, 1633-1648.
2. DUNLAP, P.V., and GREENBERG, E.P. (1988). Control of Vibrio-Fischeri Lux gene-transcription by a cyclic-AMP receptor protein Luxr protein regulatory circuit. Journal of Bacteriology 170, 4040-4046.
3. ELF, J., LOTSTEDT, P., and SJOBERG, P. (2003). Problems of high dimension in molecular biology. Presented at the 19th GAMM Seminar, Leipzig.
4. ENGEBRECHT, J., NEALSON, K., and SILVERMAN, M. (1983). Bacterial bioluminescence-isolation and genetic analysis of functions from Vibrio fischeri. Cell 32, 773-781.
5. GIBSON, M.A., and BRUCK, J. (2000). Efficient exact stochastic simulation of chemical systems with many species and many channels. Journal of Physical Chemistry A 104, 1876-1889.
6. GILLESPIE, D.T. (1976). General method for numerically simulating stochastic time evolution of coupled chemical reactions. Journal of Computational Physics 22, 403-434.
7. GILLESPIE, D.T. (1977). Exact stochastic simulation of coupled chemical reactions. Journal of Physical Chemistry 81, 2340-2361.
8. GILLESPIE, D.T. (1992). A rigorous derivation of the chemical master equation. Physica A 188, 404-425.
9. GILLESPIE, D.T. (2000). The chemical Langevin equation. Journal of Chemical Physics 113, 297-306.
10. GRAY, P.R., HURST, P.J., LEWIS, S.H. et al. (2001). Analysis and Design of Analog Integrated Circuits (Wiley, New York).
11. GREENBERG, E.P. (2000). Acyl-homoserine lactone quorum sensing in bacteria. Journal of Microbiology 38, 117-121.
12. KAPLAN, H.B., and GREENBERG, E.P. (1985). Diffusion of autoinducer is involved in regulation of the Vibrio fischeri luminescence system. Journal of Bacteriology 163, 1210-1214.
13. KENNELL, D., and RIEZMAN, H. (1977). Transcription and translation initiation frequencies of Escherichia coli Lac operon. Journal of Molecular Biology 114, 1-21.
14. McADAMS, H.H., and SHAPIRO, L. (1995). Circuit simulation of genetic networks. Science 269, 650-656.
15. MCQUARRI, D.A. (1967). Stochastic approach to chemical kinetics. Journal of Applied Probability 4, 413.
16. OZBUDAK, E.M., THATTAI, M., KURTSER, I., et al. (2002). Regulation of noise in the expression of a single gene. Nature Genetics 31, 69-73.
17. RAO, C.V., WOLF, D.M., and ARKIN, A.P. (2002). Control, exploitation and tolerance of intracellular noise. Nature 420, 231-237.
18. SCHAEFER, A.L., VAL, D.L., HANZELKA, B.L. et al. (1996). Generation of cell-to-cell signals in quorum sensing: acyl homoserine lactone synthase activity of a purified Vibrio fescheri LuxI protein. Proceedings of the National Academy of Sciences USA 93, 9505-9509.
19. SHADEL, G.S., and BALDWIN, T.O. (1991). The Vibrio fischeri Luxr protein is capable of bidirectional stimulation of transcription and both positive and negative regulation of the Luxr gene. Journal of Bacteriology 173, 568-574.
20. SHADEL, G.S., and BALDWIN, T.O. (1992a). Positive autoregulation of the Vibrio fischeri Luxr gene-Luxr and autoinducer activate camp-catabolite gene activator protein complex-independent and complex-dependent Luxr transcription. Journal of Biological Chemistry 267, 7696-7702.
21. SHADEL, G.S., and BALDWIN, T.O. (1992b). Identification of a distantly located regulatory element in the Luxd gene required for negative autoregulation of the Vibrio fischeri Luxr gene. Journal of Biological Chemistry 267, 7690-7695.
22. SIMPSON, M.L., COX, C.D., and SAYLER, G.S. (2003). Frequency domain analysis of noise in autoregulated gene circuits. Proceedings of the National Academy of Sciences USA 100, 4551-4556.
23. STEPHANOPOULOS, G.N., ARISTIDOU, A.D., and NIELSEN, J. (1998). Metabolic Engineering (Academic Press, San Diego).
24. STEVENS, A.M., and GREENBERG, E.P. (1997). Quorum sensing in Vibrio fischeri: essential elements for activation of the luminescence genes. Journal of Bacteriology 179, 557-562.
25. THATTAI, M., and VAN OUDENAARDEN, A. (2001). Intrinsic noise in gene regulatory networks. Proceedings of the National Academy of Sciences USA 98, 8614-8619.
26. WITHERS, H., SWIFT, S., and WILLIAMS, P. (2001). Quorum sensing as an integral component of gene regulatory networks in gram-negative bacteria. Current Opinion in Microbiology 4, 186-193.