메뉴 건너뛰기




Volumn 10, Issue 8, 2004, Pages 1191-1199

Origin, evolution, and mechanism of 5′ tRNA editing in chytridiomycete fungi

Author keywords

5 tRNA editing; Chytridiomycete fungi; tRNA evolution; tRNA processing

Indexed keywords

MITOCHONDRIAL DNA;

EID: 3342905120     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1261/rna.7330504     Document Type: Article
Times cited : (22)

References (40)
  • 1
    • 0025931764 scopus 로고
    • Modification of Trypanosoma brucei mitochondrial rRNA by posttranscriptional 3′ polyuridine tail formation
    • Adler, B.K., Harris, M.E., Bertrand, K.I., and Hajduk, S.L. 1991. Modification of Trypanosoma brucei mitochondrial rRNA by posttranscriptional 3′ polyuridine tail formation. Mol. Cell. Biol. 11: 5878-5884.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 5878-5884
    • Adler, B.K.1    Harris, M.E.2    Bertrand, K.I.3    Hajduk, S.L.4
  • 3
    • 0031753256 scopus 로고    scopus 로고
    • Insertional editing of mitochondrial tRNAs of Physarum polycephalum and Didymium nigripes
    • Antes, T., Costandy, H., Mahendran, R., Spottswood, M., and Miller, D. 1998. Insertional editing of mitochondrial tRNAs of Physarum polycephalum and Didymium nigripes. Mol. Cell. Biol. 18: 7521-7527.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 7521-7527
    • Antes, T.1    Costandy, H.2    Mahendran, R.3    Spottswood, M.4    Miller, D.5
  • 4
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S.L., Roger, A.J., Wenk-Siefert, I., and Doolittle, W.F. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 5
    • 0032848633 scopus 로고    scopus 로고
    • Polycistronic transcription and editing of the mitochondrial small subunit (SSU) ribosomal RNA in Dictyostelium discoideum
    • Barth, C., Greferath, U., Kotsifas, M., and Fisher, P.R. 1999. Polycistronic transcription and editing of the mitochondrial small subunit (SSU) ribosomal RNA in Dictyostelium discoideum. Curr. Genet. 36: 55-61.
    • (1999) Curr. Genet. , vol.36 , pp. 55-61
    • Barth, C.1    Greferath, U.2    Kotsifas, M.3    Fisher, P.R.4
  • 6
    • 0029935695 scopus 로고    scopus 로고
    • RNA editing: How a message is changed
    • Benne, R. 1996. RNA editing: How a message is changed. Curr. Opin. Genet. Dev. 6: 221-231.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 221-231
    • Benne, R.1
  • 7
    • 0029857254 scopus 로고    scopus 로고
    • RNA editing changes the identity of a mitochondrial tRNA in marsupials
    • Borner, G.V., Morl, M., Janke, A., and Pääbo, S. 1996. RNA editing changes the identity of a mitochondrial tRNA in marsupials. EMBO J. 15: 5949-5957.
    • (1996) EMBO J. , vol.15 , pp. 5949-5957
    • Borner, G.V.1    Morl, M.2    Janke, A.3    Pääbo, S.4
  • 9
    • 0037444274 scopus 로고    scopus 로고
    • Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences
    • Bullerwell, C.E., Forget, L., and Lang, B.F. 2003a. Evolution of monoblepharidalean fungi based on complete mitochondrial genome sequences. Nucleic Acids Res. 31: 1614-1623.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 1614-1623
    • Bullerwell, C.E.1    Forget, L.2    Lang, B.F.3
  • 10
    • 3343011897 scopus 로고    scopus 로고
    • Evolution of the fungi and their mitochondrial genomes
    • (eds. D.K. Arora and G.G. Khachatourians), Elsevier Science, Amsterdam
    • Bullerwell, C.E., Leigh, J., Seif, E., Longcore, J.E., and Lang, B.F. 2003b. Evolution of the fungi and their mitochondrial genomes. In Applied mycology and biotechnology (eds. D.K. Arora and G.G. Khachatourians), pp. 133-159. Elsevier Science, Amsterdam.
    • (2003) Applied Mycology and Biotechnology , pp. 133-159
    • Bullerwell, C.E.1    Leigh, J.2    Seif, E.3    Longcore, J.E.4    Lang, B.F.5
  • 13
    • 0036184369 scopus 로고    scopus 로고
    • Hyaloraphidium curvatum: A linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi
    • Forget, L., Ustinova, J., Wang, Z., Huss, V.A., and Lang, B.F. 2002. Hyaloraphidium curvatum: A linear mitochondrial genome, tRNA editing, and an evolutionary link to lower fungi. Mol. Biol. Evol. 19: 310-319.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 310-319
    • Forget, L.1    Ustinova, J.2    Wang, Z.3    Huss, V.A.4    Lang, B.F.5
  • 14
    • 0034507456 scopus 로고    scopus 로고
    • Functions and mechanisms of RNA editing
    • Gott, J.M. and Emeson, R.B. 2000. Functions and mechanisms of RNA editing. Annu. Rev. Genet. 34: 499-531.
    • (2000) Annu. Rev. Genet. , vol.34 , pp. 499-531
    • Gott, J.M.1    Emeson, R.B.2
  • 15
    • 0027278697 scopus 로고
    • Editing of a tRNA anticodon in marsupial mitochondria changes its codon recognition
    • Janke, A. and Pääbo, S. 1993. Editing of a tRNA anticodon in marsupial mitochondria changes its codon recognition. Nucleic Acids Res. 21: 1523-1525.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1523-1525
    • Janke, A.1    Pääbo, S.2
  • 16
    • 0030810939 scopus 로고    scopus 로고
    • Mitochondrial tRNAs in the lower fungus Spizellomyces punctatus: tRNA editing and UAG 'stop' codons recognized as leucine
    • Laforest, M.J., Roewer, I., and Lang, B.F. 1997. Mitochondrial tRNAs in the lower fungus Spizellomyces punctatus: tRNA editing and UAG 'stop' codons recognized as leucine. Nucleic Acids Res. 25: 626-632.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 626-632
    • Laforest, M.J.1    Roewer, I.2    Lang, B.F.3
  • 17
    • 0017598872 scopus 로고
    • A simple method for the large-scale preparation of mitochondria from microorganisms
    • Lang, B., Burger, G., Doxiadis, I., Thomas, D.Y., Bandlow, W., and Kaudewitz, F. 1977. A simple method for the large-scale preparation of mitochondria from microorganisms. Anal. Biochem. 77: 110-121.
    • (1977) Anal. Biochem. , vol.77 , pp. 110-121
    • Lang, B.1    Burger, G.2    Doxiadis, I.3    Thomas, D.Y.4    Bandlow, W.5    Kaudewitz, F.6
  • 18
    • 0034610287 scopus 로고    scopus 로고
    • A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus
    • Lavrov, D.V., Brown, W.M., and Boore, J.L. 2000. A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus. Proc. Natl. Acad. Sci. 97: 13738-13742.
    • (2000) Proc. Natl. Acad. Sci. , vol.97 , pp. 13738-13742
    • Lavrov, D.V.1    Brown, W.M.2    Boore, J.L.3
  • 19
    • 1642488261 scopus 로고    scopus 로고
    • Mitochondrial 3′ tRNA editing in the jakobid Seculamonas ecuadoriensis: A novel mechanism and implications for tRNA processing
    • Leigh, J. and Lang, B.F. 2004. Mitochondrial 3′ tRNA editing in the jakobid Seculamonas ecuadoriensis: A novel mechanism and implications for tRNA processing. RNA 10: 615-621.
    • (2004) RNA , vol.10 , pp. 615-621
    • Leigh, J.1    Lang, B.F.2
  • 20
    • 0027500536 scopus 로고
    • Editing of transfer RNAs in Acanthamoeba castellanii mitochondria
    • Lonergan, K.M. and Gray, M.W. 1993. Editing of transfer RNAs in Acanthamoeba castellanii mitochondria. Science 259: 812-816.
    • (1993) Science , vol.259 , pp. 812-816
    • Lonergan, K.M.1    Gray, M.W.2
  • 21
    • 1542290706 scopus 로고    scopus 로고
    • Rhizophydium brooksianum sp. nov., a mulitpored chytrid from soil
    • Longcore, J.E. 2004. Rhizophydium brooksianum sp. nov., a mulitpored chytrid from soil. Mycologia 96: 162-171.
    • (2004) Mycologia , vol.96 , pp. 162-171
    • Longcore, J.E.1
  • 22
    • 0028127728 scopus 로고
    • Editing of the mitochondrial small subunit rRNA in Physarum polycephalum
    • Mahendran, R., Spottswood, M.S., Ghate, A., Ling, M.L., Jeng, K., and Miller, D.L. 1994. Editing of the mitochondrial small subunit rRNA in Physarum polycephalum. EMBO J. 13: 232-240.
    • (1994) EMBO J. , vol.13 , pp. 232-240
    • Mahendran, R.1    Spottswood, M.S.2    Ghate, A.3    Ling, M.L.4    Jeng, K.5    Miller, D.L.6
  • 24
    • 0036792830 scopus 로고    scopus 로고
    • tRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features
    • Marck, C. and Grosjean, H. 2002. tRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features. RNA 8: 1189-1232.
    • (2002) RNA , vol.8 , pp. 1189-1232
    • Marck, C.1    Grosjean, H.2
  • 25
    • 0039261650 scopus 로고    scopus 로고
    • A single editing event is a prerequisite for efficient processing of potato mitochondrial phenylalanine tRNA
    • Maréchal-Drouard, L., Cosset, A., Remacle, C., Ramamonjisoa, D., and Dietrich, A. 1996a. A single editing event is a prerequisite for efficient processing of potato mitochondrial phenylalanine tRNA. Mol. Cell. Biol. 16: 3504-3510.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 3504-3510
    • Maréchal-Drouard, L.1    Cosset, A.2    Remacle, C.3    Ramamonjisoa, D.4    Dietrich, A.5
  • 26
    • 0141621017 scopus 로고    scopus 로고
    • RNA editing of larch mitochondrial tRNA(His) precursors is a prerequisite for processing
    • Maréchal-Drouard, L., Kumar, R., Remacle, C., and Small, I. 1996b. RNA editing of larch mitochondrial tRNA(His) precursors is a prerequisite for processing. Nucleic Acids Res. 24: 3229-3234.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3229-3234
    • Maréchal-Drouard, L.1    Kumar, R.2    Remacle, C.3    Small, I.4
  • 27
    • 0033985575 scopus 로고    scopus 로고
    • On the wobble G.U and related pairs
    • Masquida, B. and Westhof, E. 2000. On the wobble G.U and related pairs. RNA 6: 9-15.
    • (2000) RNA , vol.6 , pp. 9-15
    • Masquida, B.1    Westhof, E.2
  • 29
    • 0029928715 scopus 로고    scopus 로고
    • The mitochondrial DNA of Allomyces macrogynus: The complete genomic sequence from an ancestral fungus
    • Paquin, B. and Lang, B.F. 1996. The mitochondrial DNA of Allomyces macrogynus: The complete genomic sequence from an ancestral fungus. J. Mol. Biol. 255: 688-701.
    • (1996) J. Mol. Biol. , vol.255 , pp. 688-701
    • Paquin, B.1    Lang, B.F.2
  • 30
    • 0000725756 scopus 로고    scopus 로고
    • Editing of tRNA
    • (eds. H. Grosjean and R. Benne), ASM Press, Washington, DC
    • Price, D.H. and Gray, M.W. 1998. Editing of tRNA. In Modification and editing of RNA (eds. H. Grosjean and R. Benne), pp. 289-305. ASM Press, Washington, DC.
    • (1998) Modification and Editing of RNA , pp. 289-305
    • Price, D.H.1    Gray, M.W.2
  • 31
    • 0033057502 scopus 로고    scopus 로고
    • Confirmation of predicted edits and demonstration of unpredicted edits in Acanthamoeba castellanii mitochondrial tRNAs
    • -. 1999a. Confirmation of predicted edits and demonstration of unpredicted edits in Acanthamoeba castellanii mitochondrial tRNAs. Curr. Genet. 35: 23-29.
    • (1999) Curr. Genet. , vol.35 , pp. 23-29
  • 32
    • 0032992906 scopus 로고    scopus 로고
    • A novel nucleotide incorporation activity implicated in the editing of mitochondrial transfer RNAs in Acanthamoeba castellanii
    • -. 1999b. A novel nucleotide incorporation activity implicated in the editing of mitochondrial transfer RNAs in Acanthamoeba castellanii. RNA 5: 302-317.
    • (1999) RNA , vol.5 , pp. 302-317
  • 33
    • 0033610848 scopus 로고    scopus 로고
    • Processing and editing of overlapping tRNAs in human mitochondria
    • Reichert, A., Rothbauer, U., and Morl, M. 1998. Processing and editing of overlapping tRNAs in human mitochondria. J. Biol. Chem. 273: 31977-31984.
    • (1998) J. Biol. Chem. , vol.273 , pp. 31977-31984
    • Reichert, A.1    Rothbauer, U.2    Morl, M.3
  • 34
    • 0031971717 scopus 로고    scopus 로고
    • Processing of plant mitochondrial tRNAGly and tRNASer-(GCU) is independent of RNA editing
    • Schock, I., Maréchal-Drouard, L., Marchfelder, A., and Binder, S. 1998. Processing of plant mitochondrial tRNAGly and tRNASer-(GCU) is independent of RNA editing. Mol. Gen. Genet. 257: 554-560.
    • (1998) Mol. Gen. Genet. , vol.257 , pp. 554-560
    • Schock, I.1    Maréchal-Drouard, L.2    Marchfelder, A.3    Binder, S.4
  • 35
  • 36
    • 0029877499 scopus 로고    scopus 로고
    • RNA editing in trypanosomatid mitochondria
    • Simpson, L., Frech, G.C., and Maslov, D.A. 1996. RNA editing in trypanosomatid mitochondria. Methods Enzymol. 264: 99-121.
    • (1996) Methods Enzymol. , vol.264 , pp. 99-121
    • Simpson, L.1    Frech, G.C.2    Maslov, D.A.3
  • 38
    • 0030444779 scopus 로고    scopus 로고
    • RNA editing in the acceptor stem of squid mitochondrial tRNA(Tyr)
    • Tomita, K., Ueda, T., and Watanabe, K. 1996. RNA editing in the acceptor stem of squid mitochondrial tRNA(Tyr). Nucleic Acids Res. 24: 4987-4991.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 4987-4991
    • Tomita, K.1    Ueda, T.2    Watanabe, K.3
  • 39
    • 0028865434 scopus 로고
    • Transfer RNA editing in land snail mitochondria
    • Yokobori, S. and Pääbo, S. 1995. Transfer RNA editing in land snail mitochondria. Proc. Natl. Acad. Sci. 92: 10432-10435.
    • (1995) Proc. Natl. Acad. Sci. , vol.92 , pp. 10432-10435
    • Yokobori, S.1    Pääbo, S.2
  • 40
    • 0031575418 scopus 로고    scopus 로고
    • Polyadenylation creates the discriminator nucleotide of chicken mitochondrial tRNA(Tyr)
    • -. 1997. Polyadenylation creates the discriminator nucleotide of chicken mitochondrial tRNA(Tyr). J. Mol. Biol. 265: 95-99.
    • (1997) J. Mol. Biol. , vol.265 , pp. 95-99


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.