Mathematical modeling of calcium homeostasis in yeast cells

Cell Calcium

Volumn 39, Issue 4, 2006, Pages 337-348

  Cui, Jiangjun ^a   Kaandorp, Jaap A ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

Calcium homeostasis; Conformational switch model; Gene expression feedback control; Response curve; Resting level

Indexed keywords

CALCIUM ION; CALMODULIN; CELL PROTEIN;

ARTICLE; CALCIUM CELL LEVEL; CALCIUM HOMEOSTASIS; CELL GROWTH; CELL MEMBRANE STEADY POTENTIAL; CELL STIMULATION; CONTROLLED STUDY; EXTRACELLULAR CALCIUM; FEEDBACK SYSTEM; GENE EXPRESSION REGULATION; MATHEMATICAL COMPUTING; MATHEMATICAL MODEL; NONHUMAN; OBSERVATIONAL STUDY; PRIORITY JOURNAL; QUALITATIVE ANALYSIS; REGULATORY MECHANISM; SACCHAROMYCES CEREVISIAE; STEADY STATE; YEAST CELL;

SACCHAROMYCES CEREVISIAE;

EID: 33344475649     PISSN: 01434160     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ceca.2005.12.001     Document Type: Article

References (41)

1. 2+ homeostasis in Saccharomyces cerevisiae J. Biol. Chem. 277 2002 45751-45758
2. B. Alberts A. Johnson J. Lewis M. Raff K. Roberts P. Walter Molecular Biology of the Cell 2002 Garland Publishing, Inc New York
3. A.F. Batiza T. Schulz P.H. Masson Yeast respond to hypotonic shock with a calcium pulse J. Biol. Chem. 271 1996 23357-23362
4. M. Bonilla K.W. Cunningham Calcium release and influx in yeast: TRPC and VGCC rule another kingdom Science's STKE 127 2002 pe17
5. L.M. Boustany M.S. Cyert Calcineurin-dependent regulation of Crz1p nuclear export requires Msn5p and a conserved calcineurin docking site Genes Dev. 16 2002 608-619
6. S. Cooper What is the bacterial growth law during the division cycle? J. Bacteriol. 170 1988 5001-5005
7. G.R. Crabtree Calcium, calcineurin and the control of transcription J. Biol. Chem. 276 2001 2313-2316
8. 2+ homeostasis J. Cell Biol. 157 2002 1017-1028
9. 2+ ATPases J. Cell Biol. 124 1994 351-363
10. 2+ ATPases in Saccharomyces cerevisiae Mol. Cell. Biol. 16 1996 2226-2237
11. M.S. Cyert Genetic analysis of calmodulin and its targets in Sacchromyces cerevisiae Annu. Rev. Genet. 35 2001 647-672
12. 2+ by yeast vacuoles J. Biol. Chem. 269 1994 7273-7278
13. +-ATPase and cellular ATP FEBS Lett. 316 1993 73-78
14. 2+-ATPase FEBS Lett. 392 1996 194-200
15. D.G. Hardie Biochemical Messengers 1991 Chapman and Hall London
16. Z. Hilioti D.A. Gallagher S.T. Low-Nam et al. GSK-3 kinase enhance calcineurin signaling by phosphorylation of RCNs Genes Dev. 18 2004 35-47
17. T.K. Jingsbury K.W. Cunningham A conserved family of calcineurin regulators Genes Dev. 14 2000 1595-1604
18. H. Kitano Systems biology: A brief overview Nature 295 2002 1662-1664
19. 2+ secretory pools in yeast Mol. Cell. Biol. 20 2000 6686-6694
20. C.W. Macdiarmid M.A. Milanick D.J. Eide Biochemical properties of vacuolar zinc transport systems of Saccharomyces cerevisiae J. Biol. Chem. 277 2002 39187-39194
21. 2+ homeostasis in the vps33Δ vacuolar biogenesis mutant of Saccharomyces cerevisiae J. Biol. Chem. 274 1999 5939-5947
22. 2+ levels in S. cerevisiae FEBS Lett. 451 1999 132-136
23. 2+ influx systems by pheromone signaling in Saccharomyces cerevisiae Genetics 159 2001 1527-1538
24. Y. Ohsumi Y. Ankaru Calcium transport driven by a proton motive force in vacuolar membrane vesicles of Saccharomyces cerevisiae J. Biol. Chem. 258 1983 5614-5617
25. H. Okamura J. Aramburu C. García-Rodríguez et al. Concerted dephosphorylation of the transcription factor NFAT1 induces a conformational switch that regulates transcriptional activity Mol. Cell 6 2000 539-550
26. 2+ -permeable channel in the yeast vacuolar membrane Proc. Natl. Acad. Sci. U.S.A. 98 2001 7801-7805
27. D. Pruyne A. Legesse-Miller L. Gao Y. Dong A. Bretscher Mechanisms of polarized growth and organelle segregation in yeast Annu. Rev. Cell Dev. Biol. 20 2004 559-591
28. C. Salazar T. HÖfer Allosteric regulation of the transcription factor NFAT1 by multiple phosphorylation sites: A mathematical analysis J. Mol. Biol. 327 2003 31-45
29. D. Sanders C. Brownlee J.F. Harper Communicating with calcium Plant Cell 11 1999 691-706
30. D. Sanders J. Pelloux C. Brownlee J.F. Harper Calcium at the crossroads of signaling Plant Cell 14 Suppl. 2002 401-417
31. 2+-ATPase in yeast Golgi, has properties distinct from Sarco/endoplasmic reticulum and plasma membrane calcium pumps J. Biol. Chem. 272 1997 9895-9901
32. A. Stathopoulos-Gerontides J.J. Guo M.S. Cyert Yeast calcineurin regulates nuclear localization of the Crz1p transcription factor through dephosphorylation Genes Dev. 13 1999 798-803
33. 2+ in the yeast endoplasmic reticulum reaches only 10 μM and is mainly controlled by the secretory pathway pump Pmr1 EMBO J. 18 1999 4733-4743
34. 2+-ATPase Pmc1p by the v-SNARE protein Nyv1p J. Biol. Chem. 276 2001 6200-6206
35. L.S. Weisman Yeast vacuole inheritance and dynamics Annu. Rev. Genet. 37 2003 435-460
36. C.L. Woldringh P.G. Huls N.O.E. Vischer Volume growth of daughter and parent cells during the cell cycle of Saccharomyces cerevisiae a/α as determined by image cytometry J. Bacteriol. 175 1993 3174-3181
37. A. Zappe, Unterschiedliche funktionen der lonenpumpe Pmr1, http://elib.uni-stuttgart.de/opus/volltexte/2003/1425.
38. http://biochemie.web.med.uni-muenchen.de/Yeast_Biology
39. http://www.dbsr.duke.edu/yeast/InfoandProtocols/Growth.htm
40. http://www.phys.ksu.edu/gene/a1.html
41. http://www-saps.plantsci.cam.ac.uk/worksheets/scotland/double.htm