Molecular phylogeny and evolution of the pelagic copepod genus Neocalanus (Crustacea: Copepoda)

Marine Biology

Volumn 148, Issue 5, 2006, Pages 1071-1079

  Machida, R J ^a   Miya, M U ^b   Nishida, M ^a   Nishida, S ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATURAL HISTORY MUSEUM AND INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CRUSTACEAN; MOLECULAR ANALYSIS; PHYLOGENY; SPECIATION (BIOLOGY);

PACIFIC OCEAN; SEA OF JAPAN; SEA OF OKHOTSK;

CALANOIDA; COPEPODA; CRUSTACEA; EUCALANUS BUNGII; NEOCALANUS; NEOCALANUS CRISTATUS; NEOCALANUS FLEMINGERI; NEOCALANUS GRACILIS; NEOCALANUS PLUMCHRUS; NEOCALANUS ROBUSTIOR; NEOCALANUS TONSUS;

EID: 33344471913     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-005-0140-0     Document Type: Article

References (42)

1. Bradford JM (1988) Review of the taxonomy of the Calanidae (Copepoda) and the limits of the genus Calanus. Hydrobiologia 167/168:73-81
2. Bradford JM, Jillett JB (1974) A revision of generic definitions in the Calanidae (Copepoda, Calanoida). Crustaceana 27:5-16
3. Brodsky KA (1972) Phylogeny of the family Calanidae (Copepoda) on the basis of a comparative morphological analysis of its characters. Issled Fauny Morej 12:1-127 (English translation, Israel Program for Science Translations 1975)
4. Bucklin A, Frost BW, Bradford-Grieve J, Allen LD, Copley NJ (2003) Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae. Mar Biol 142:333-343
5. Burridge CP (2002) Antitropicality of Pacific fishes: molecular insights. Environ Biol Fish 65:151-164
6. Burridge CP, White RWG (2000) Molecular phylogeny of the antitropical subgenus Goniistius (Perciformes : Cheilodactylidae : Cheilodactylus): evidence for multiple transequatorial divergences and non-monophyly. Biol J Linn Soc 70:435-458
7. Campbell MH (1934) The life history and postembryonic development of the copepods, Calanus tonsus Brady and Euchaeta japonica Marukawa. J Biol Bd Can 1:1-65
8. Cheng S, Chang SY, Gravitt P, Respess R (1994) Long PCR. Nature 369:684-685
9. Conover RJ (1988) Comparative life histories in the genera Calanus and Neocalanus in high latitudes of the northern hemisphere. Hydrobiologia 167/168:127-142
10. Dunbar MJ (1979) The relation between the oceans. In: van der Spoel S, Pierrot-Bults AC (eds) Zoogeography and diversity of plankton. Halsted Press, New York, pp 112-125
11. Fulton J (1973) Some aspects of the life history of Calanus plumchrus in the Strait of Georgia. J Fish Res Bd Can 30:811-815
12. Heinrich AK (1962) The life histories of plankton animals and seasonal cycles of plankton communities in the oceans. J Cons Cons Int Explor Mer 27:15-24
13. Huelsenbeck JP, Ronquist F (2001) MrBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17:754-755
14. Klein Breteler WCM, Schogt N, Gonzalez SR (1990) On the role of food quality in grazing and development of life stages, and genetic change of body size during cultivation of pelagic copepods. J Exp Mar Biol Ecol 135:177-189
15. Kobari T, Ikeda T (1999) Vertical distribution, population structure and life cycle of Neocalanus cristatus (Crustacea: Copepoda) in the Oyashio region, with notes on its regional variations. Mar Biol 134:683-696
16. Kobari T, Ikeda T (2001a) Life cycle of Neocalanus flemingeri (Crustacea: Copepoda) in the Oyashio region, western subarctic Pacific, with notes on its regional variations. Mar Ecol Prog Ser 209:243-255
17. Kobari T, Ikeda T (2001b) Ontogenetic vertical migration and life cycle of Neocalanus plumchrus (Crustacea: Copepoda) in the Oyashio region, with notes on regional variations in body sizes. J Plankton Res 23:287-302
18. Lavrov DV, Boore JL, Brown WM (2000) The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus. Mol Biol Evol 17:813-824
19. Löytynoja A, Milinkovitch MC (2003) A hidden Markov model for progressive multiple alignment. Bioinformatics 19:1505-1513
20. Machida RJ, Miya MU, Nishida M, Nishida S (2002) Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar Biotech 4:406-417
21. Machida RJ, Miya MU, Nishida M, Nishida S (2004) Large-scale gene rearrangements in the mitochondrial genomes of two calanoid copepods Eucalanus bungii and Neocalanus cristatus (Crustacea), with notes on new versatile primers for the srRNA and COI genes. Gene 332:71-78
22. Maddison DR, Maddison WP (2000) MacClade 4: analysis of phylogeny and character evolution. Sinauer Associates, Sunderland
23. Miller CB (1988) Neocalanus flemingeri, a new species of Calanidae (Copepoda: Calanoida) from the subarctic Pacific Ocean, with a comparative redescription of Neocalanus plumchrus (Marukawa) 1921. Prog Oceanogra 20:223-273
24. Miller CB, Clemons MJ (1988) Revised life history analysis for large grazing copepods in the subarctic Pacific Ocean. Prog Oceanogra 20:293-313
25. Miller CB, Frost BW, Batchelder HP, Clemons MJ, Conway RE (1984) Life histories of large, grazing copepods in a subarctic ocean gyre: Neocalanus plumchrus, Neocalanus cristatus, and Eucalanus bungii in the Northeast Pacific. Prog Oceanogra 13:201-243
26. Miller CB, Terazaki M (1989) The life histories of Neocalanus flemingeri and Neocalanus plumchrus in the Sea of Japan. Bull Plankton Soc Japan 36:27-41
27. Miller KJ, Bradford-Grieve JM, Jillett JB (1999) Genetic relationship between winter deep-dwelling and spring surface-dwelling female Neocalanus tonsus in the Southern Ocean. Mar Biol 134:99-106
28. Mullin MM, Evans PM (1976) Distribution, morphometry, and seasonal biology of the planktonic copepods Neocalanus robustior and Neocalanus gracilis in the Pacific Ocean. Pacific Sci 30:119-130
29. Nylander JAA (2004) MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
30. Reid JL, Brinton E, Fleminger A, Venrick EL, McGowan JA (1978) Ocean circulation and marine life. In: Charnock H, Deacon G (eds) Advances in oceanography. Plenum, New York
31. Saito H, Tsuda A (2000) Egg production and early development of large subarctic copepods Neocalanus cristatus, N. plumchrus and N. flemingeri. Deep Sea Res Part I 47:2141-2158
32. Sewell RBS (1947) The free-swimming planktonic Copepoda. Systematic account. Scientific reports of the John Murray Expedition 1933-1934, vol 8, pp 1-303
33. Swofford DL (2002) PAUP*. Phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Massachusetts
34. Taniguchi M, Kanehisa T, Sawabe T, Christen R, Ikeda T (2004) Molecular phylogeny of Neocalanus copepods in the subarctic Pacific Ocean, with notes on non-geographical genetic variations for Neocalanus cristatus. J Plankton Res 26:1249-1255
35. Tsuda A, Saito H, Kasai H (1999) Life histories of Neocalanus flemingeri and Neocalanus plumchrus (Calanoida: Copepoda) in the western subarctic Pacific. Mar Biol 135:533-544
36. Tsuda A, Saito H, Kasai H (2001a) Geographical variation of body size of Neocalanus cristatus, N. plumchrus and N. flemingeri in the subarctic Pacific and its marginal seas: implication for the origin of large form of N. flemingeri in the Oyashio area. J Oceanogr 57:341-352
37. Tsuda A, Saito H, Kasai H (2001b) Life history strategies of subarctic copepods Neocalanus flemingeri and N. plumchrus, especially concerning lipid accumulation patterns. Plankton Biol Ecol 48:52-58
38. Valverde JR, Batuecas B, Moratilla C, Marco R, Garesse R (1994) The complete mitochondrial DNA sequence of the crustacean Artemia franciscana. J Mol Evol 39:400-408
39. van der Spoel S, Pierrot-Bults AC (1979) Zoogeography of the Pacific Ocean. In: van der Spoel S, Pierrot-Bults AC (eds) Zoogeography and diversity of plankton. Halsted Press, New York, pp 293-327
40. Vervoort W (1946) Biological results of the Snellius Expedition. The bathypelagic Copepoda Calanoida of the Snellius Expedition. I. Families Calanidae, Eucalanidae, Paracalanidae, and Pseudocalanidae. Temminckia 8:1-181
41. Vervoort W (1957) Copepods from Antarctic and Sub-antarctic plankton samples. Rep BANZ Antarct Res Exped B3:1-160
42. Yang ZB (1994) Estimating the pattern of nucleotide substitution. J Mol Evol 39:105-111