Kinetics of microbial sulfate reduction in estuarine sediments

Geochimica et Cosmochimica Acta

Volumn 70, Issue 5, 2006, Pages 1148-1162

  Pallud, Céline ^a,b   Van Cappellen, Philippe ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ESTUARINE SEDIMENT; REACTION KINETICS; SEDIMENT CHEMISTRY; SULFATE-REDUCING BACTERIUM;

EID: 32944481453     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2005.11.002     Document Type: Article

References (62)

1. H. Abdollahi D.B. Nedwell Seasonal temperature as a factor influencing bacterial sulfate reduction in a saltmarsh sediment Microb. Ecol. 5 1979 73-79
2. F. Bak N. Pfennig Microbial sulfate reduction in littoral sediment of Lake Constance FEMS Microbiol. Ecol. 85 1991 31-42
3. J. Bear Dynamics of Fluids in Porous Media 1972 Elsevier New York
4. B.P. Boudreau J.T. Westrich The dependence of bacterial sulfate reduction on sulfate concentration in marine sediments Geochim. Cosmochim. Acta 48 1984 2503-2516
5. K.K. Brandt F. Vester A.N. Jensen K. Ingvorsen Sulfate reduction dynamics and enumeration of sulfate-reducing bacteria in hypersaline sediments of the Great Salt Lake (Utah, USA) Microb. Ecol. 41 2001 1-11
6. D.E. Canfield Sulfate reduction and oxic respiration in marine sediments: Implications for organic carbon preservation in euxinic environments Deep-Sea Res. Part I 36 1989 121-138
7. R.M. Chambers J.T. Hollibaugh S.M. Vink Sulfate reduction and sediment metabolism in Tomales bay, California Biogeochemistry 25 1994 1-18
8. T. Dalsgaard F. Bak Nitrate reduction in a sulfate-bacterium, Desulfovibrio desulfuricans, isolated from a rice paddy soil: Sulfide inhibition, kinetics and regulation Appl. Environ. Microbiol. 60 1994 291-297
9. A. Dechesne C. Pallud D. Debouzie J.P. Flandrois J.P. Gaudet G.L. Grundmann A method to study the microscale 3-D spatial distribution of bacteria in soil Soil Biol. Biochem. 35 2003 1537-1546
10. L. Elsgaard D. Prieur G.M. Mukwaya B.B. Jørgensen Thermophilic sulfate reduction in hydrothermal sediment of Lake Tanganyika, East Africa Appl. Environ. Microbiol. 60 1994 1473-1480
11. G.D. Fauque Ecology of sulfate-reducing bacteria L.L. Barton Sulfate-Reducing Bacteria 1995 Plenum Press New York, London 217-242
12. M. Fukui S. Takii Kinetics of sulfate respiration by free living and particle associated sulfate-reducing bacteria FEMS Microbiol. Ecol. 13 1994 241-247
13. B. Gribsholt E. Kristensen Benthic metabolism and sulfur cycling along an inundation gradient in a tidal Spartina anglica salt marsh Limnol. Oceanogr. 48 2003 2151-2162
14. J.F. Henderson Statistical analysis of enzyme kinetic data R. Eisenthal M.J. Danson Enzyme Assays: A Practical Approach 1993 Oxford University Press Oxford
15. S.M. Henrichs W.S. Reeburgh Anaerobic mineralization of marine organic matter: Rates and the role of anaerobic processes in the oceanic carbon economy Geomicrobiol. J. 5 1987 191-237
16. M. Holmer P. Storkholm Sulphate reduction and sulphur cycling in lake sediments: A review Freshwater Biol. 46 2001 431
17. B.L. Howes J.W.H. Dacey G.M. King Carbon flow through oxygen and sulphate reduction pathways in salt marsh sediments Limnol. Oceanogr. 29 1984 1037-1051
18. 2S in iron sulfide transformations: Examples from Effingham Inlet, Orca Basin, and the Black Sea Am. J. Sci. 299 1999 556-588
19. C. Hyacinthe P. Van Cappellen An authigenic iron phosphate phase in estuarine sediments: Composition, formation and chemical reactivity Mar. Chem. 91 2004 227-251
20. K. Ingvorsen B.B. Jørgensen Kinetics of sulfate uptake by freshwater and marine species of Desulfovibrio Arch. Microbiol. 139 1984 61-66
21. K. Ingvorsen A. Zehnder B.B. Jørgensen Kinetics of sulfate and acetate uptake by Desulfovibrio postgatei Appl. Environ. Microbiol. 47 1984 403-408
22. K. Ingvorsen J.G. Zeikus T.D. Brock Dynamics of bacterial sulfate reduction in a eutrophic lake Appl. Environ. Microbiol. 42 1981 1029-1036
23. J.G. Jones B.M. Simon Differences in microbial decomposition processes in profundal and littoral lake sediments, with particular reference to the nitrogen cycle J. Gen. Microbiol. 123 1981 297-312
24. B.B. Jørgensen A comparison of methods for the quantification of bacterial sulfate reduction in coastal marine sediments I. Measurement with radiotracer techniques Geomicrobiol. J. 1 1978 11-27
25. B.B. Jørgensen The sulfur cycle of a coastal marine sediment (Limfjorden, Denmark) Limnol. Oceanogr. 22 1977 814-932
26. B.B. Jørgensen Mineralization of organic matter in the sea bed- the role of sulphate reduction Nature 296 1982 643-645
27. G.M. King Patterns of sulfate reduction and the sulfur cycle in a South Carolina salt marsh Limnol. Oceanogr. 33 1988 376-390
28. C. Koretsky C. Moore K. Lowe C. Meile T. DiChristina P. Van Cappellen Seasonal oscillation of microbial iron and sulfate reduction in saltmarsh sediments Biogeochemistry 64 2003 179-203
29. C.M. Koretsky P. Van Cappellen T.J. DiChristina J.E. Kostka K.L. Lowe C.M. Moore A.N. Roychoudhury E. Viollier Salt marsh pore water geochemistry does not correlate with microbial community structure Estuar. Coast. Shelf Sci. 62 2005 233-251
30. J.E. Kostka A. Roychoudhury P. Van Cappellen Rates and controls of anaerobic microbial respiration across spatial and temporal gradients in saltmarsh sediments Biogeochemistry 60 2002 49-76
31. J.-H. Li K.J. Purdy S. Takii H. Hayashi Seasonal changes in ribosomal RNA of sulfate-reducing bacteria and sulfate-reducing activity in a freshwater lake sediment FEMS Microbiol. Ecol. 28 1999 31-39
32. J.-H. Li S. Takii R. Kotakemori H. Hayashi Sulfate reduction in profundal sediments in Lake Kizaki, Japan Hydrobiologia 333 1996 201-208
33. M.C. Marvin-DiPasquale D.G. Capone Benthic sulfate reduction along the Chesapeake Bay central channel. I. Spatial trends and controls Mar. Ecol. Prog. Ser. 168 1998 213-228
34. J. Marxsen D.M. Fiebig Use of perfused cores for evaluating extracellular enzyme activity in stream-bed sediments FEMS Microbiol. Ecol. 13 1993 1-12
35. P.A. Meyers Preservation of elemental and isotopic source identification of sedimentary organic matter Chem. Geol. 114 1994 289-302
36. J.J. Middelburg G. Klaver J. Nieuwenhuize A. Wielemaker W. de Haas T. Vlug J.F.W.A. van der Nat Organic matter mineralization in intertidal sediments along an estuarine gradient Mar. Ecol. Prog. Ser. 132 1996 157-168
37. D.B. Nedwell T.R. Walker J.C. Ellis-Evans A. Clarke Measurements of seasonal rates and annual budgets of organic carbon fluxes in Antarctic coastal environment at Signy Island, South Orkney Islands, suggest a broad balance between production and decomposition Appl. Environ. Microbiol. 59 1993 3989-3995
38. S. Okabe P.H. Nielsen W.G. Characklis Factors affecting microbial sulfate reduction by Desulfovibrio desulfuricans in continuous culture: limiting nutrients and sulfide concentration Biotechnol. Bioeng. 40 1992 725-734
39. Pallud, C., Van Cappellen, P., 2003. Kinetic study of sulfate reduction in estuarine sediments. Geophysical Research Abstracts 5, EGS-AGU-EUG Joint Assembly, Nice, France, April 6-11.
40. C. Pallud A. Dechesne J.P. Gaudet D. Debouzie G.L. Grundmann Modification of the spatial distribution of the 2,4-Dichlorophenoxyacetic acid degrader micro-habitats during growth in soil columns Appl. Environ. Microbiol. 70 2004 2709-2716
41. J.-H. Park X. Zhao T.C. Voice Comparison of biodegradation kinetic parameters for naphthalene in batch and sand column systems by Pseudomonas putida Environ. Prog. 20 2001 93-102
42. H.O. Pfannkuch Contribution á l'étude des déplacements de fluides miscibles dans un milieu poreux Rev. Inst. Fr. Petrol. 18 1963 215-270
43. K.J. Purdy D.B. Nedwell T.M. Embley S. Takii Use of 16S rRNA-targeted oligonucleotide probes to investigate the distribution of sulphate-reducing bacteria in estuarine sediments FEMS Microbiol. Ecol. 36 2001 165-168
44. A. Roychoudhury Sulfate respiration in extreme environments: A kinetic study Geomicrobiol. J. 21 2004 33-43
45. A.N. Roychoudhury E. Viollier P. Van Cappellen A flow-through reactor for studying biogeochemical reactions in undisturbed aquatic sediments Appl. Geochem. 13 1998 269-280
46. H. Sass H. Cypionka H.-D. Babenzien Vertical distribution of sulfate-reducing bacteria at the oxic-anoxic interface in sediments of the oligotrophic Lake Stechlin FEMS Microbiol. Ecol. 22 1997 245-255
47. S.M. Sievert T. Brinkhoff G. Muyzer W. Ziebis J. Kuever Spatial heterogeneity of bacterial populations along an environmental gradient at a shallow submarine hydrothermal vent near Milos Island (Greece) Appl. Environ. Microbiol. 65 1999 3834-3842
48. R.L. Smith M.J. Klug Reduction of sulfur compounds in the sediments of a eutrophic lake basin Appl. Environ. Microbiol. 41 1981 1230-1237
49. J. Sonne-Hansen P. Westermann B.K. Ahring Kinetics of sulfate and hydrogen uptake by the thermophilic sulfate-reducing bacteria Thermodesulfobacterium sp. strain JSP and Thermodesulfovibrio sp. strain R1Ha3 Appl. Environ. Microbiol. 65 1999 1304-1307
50. A. Teske C. Wawer G. Muyzer N.B. Ramsing Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments Appl. Environ. Microbiol. 62 1996 1405-1415
51. 2, and S in coastal marine sediments Limnol. Oceanogr. 34 1989 793-806
52. M. Thullner P. Van Cappellen P. Regnier Modeling the impact of microbial activity on redox dynamics in porous media Geochim. Cosmochim. Acta 69 2005 5005-5019
53. M. Trimmer K.J. Purdy D.B. Nedwell Process measurement and phylogenetic analysis of the sulphate reducing bacterial communities of two contrasting benthic sites in the upper estuary of the Great Ouse, Norfolk, UK FEMS Microbiol. Ecol. 24 1997 333-342
54. A. Tschech N. Pfennig Growth yield increase linked to caffeate reduction in Acetobacterium woodii Arch. Microbiol. 137 1984 163-167
55. P. Wellsbury R.A. Herbert R.J. Parkes Bacterial activity and production in near-surface estuarine and freshwater sediments FEMS Microbiol. Ecol. 19 1996 203-214
56. J.T. Westrich R.A. Berner The effect of temperature on rates of sulfate reduction in marine sediments Geomicrobiol. J. 6 1988 99-117
57. F. Widdel Microbiology and ecology of sulfate- and sulfur-reducing bacteria A.Jb. Zehnder Biology of Anaerobic Organisms 1988 Wiley New York 469-586
58. F. Widdel F. Bak Gram-negative mesophilic sulfate-reducing bacteria A. Balows H.G. Trüper M. Dworkin W. Harder K.H. Schleifer The Procaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications 1992 Springer Verlag New York 3352-3378
59. E.A. Wieringa J. Overmann H. Cypionka Detection of abundant sulphate-reducing bacteria in marine oxic sediment layers by a combined cultivation and molecular approach Environ. Microbiol. 2 2000 417-427
60. T. Wind R. Conrad Sulfur compounds, potential turnover of sulfate and thiosulfate, and numbers of sulfate-reducing bacteria in planted and unplanted paddy soil FEMS Microbiol. Ecol. 18 1995 257-266
61. R. Wollast The Scheldt estuary W. Salomons B. Blayne E. Duursma U. Forstmer Pollution of the North Sea: An Assessment 1988 Springer Verlag Berlin 183-193
62. Woomer, P.A., 1994. Most probable number counts. In: Mickelson, S.H., Bigham, J.M. (Eds.), Methods of Soil Analysis, Part 2. Microbiological and Biochemical Properties. SSSA Book Series, No. 5. Madison, WI, pp. 59-79.