The application of HRTEM techniques and nanosims to chemically and isotopically characterize Geobacter sulfurreducens surfaces

Canadian Mineralogist

Volumn 43, Issue 5, 2005, Pages 1631-1641

  Fayek, Mostafa ^a,b   Utsunomiya, Satoshi ^c   Pfiffner, Susan M ^a   White, David C ^a   Riciputi, Lee R ^a,b   Ewing, Rodney C ^c   Anovitz, Lawrence M ^a,b   Stadermann, Frank J ^d  

^a UNIVERSITY OF TENNESSEE   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF MICHIGAN   (United States)

^d WASHINGTON UNIVERSITY   (United States)

Author keywords

Geobacter sulfurreducens; High resolution transmission electron microscopy (HRTEM); Nanoscale secondary ion mass spectrometry (NanoSIMS); Uraninite

Indexed keywords

BIOPRECIPITATED MINERALS; GEOBACTER SULFURREDUCENS; HIGH-RESOLUTION TRANSMISSION ELECTRON MICROSCOPY; NANOSCALE SECONDARY-ION MASS SPECTROMETRY; URANINITE;

BACTERIA; BIOFILMS; MICROBIAL ELECTRODES; NANOSTRUCTURED MATERIALS; NANOTECHNOLOGY; PRECIPITATION (CHEMICAL); SECONDARY ION MASS SPECTROMETRY; SURFACE PROPERTIES; THERMODYNAMIC STABILITY; TRANSMISSION ELECTRON MICROSCOPY; URANIUM;

MINERALOGY;

CRYSTALLOGRAPHY; GEOMICROBIOLOGY; PRECIPITATION (CHEMISTRY); SPECTROMETRY; URANIUM;

GEOBACTER SULFURREDUCENS;

EID: 32944478201     PISSN: 00084476     EISSN: None     Source Type: Journal    
DOI: 10.2113/gscanmin.43.5.1631     Document Type: Article

References (39)

1. Abdelouas, A., Lutze, W. & Nuttall, H.E. (1999): Oxidative dissolution of uraninite precipitated on Navajo sandstone. J. Contam. Hydrol. 36, 353-375.
2. Andres, Y., Maccordick, J. & Hurbert, J.C. (1993): Adsorption of several actinides (Th, U) and lanthanides (La, Eu, Yb) ions by Mycobacterium smegmatis. Appl. Microbiol. Biotechnol. 39, 413-417.
3. Chandra, S. & Morrison, G.H. (1997): Evaluation of fracture planes and cell morphology in complementary fractures of cultured cells in the frozen-hydrated state by field-emission secondary electron microscopy: feasibility from ion localization and fluorescence imaging studies. J. Microsc. 186, 232-245.
4. Chandra, S., Morrison, G.H. & Wolcott, C.C. (1986): Imaging intracellular elemental distribution and ion fluxes in cultured cells using ion microscopy: a freeze-fracture methodology. J. Microsc. 144, 15-37.
5. Chandra, S., Smith, D.R. & Morrison, G.H. (2000): Subcellular imaging by dynamic SIMS ion microscopy. Anal. Chem. 72, 104-114.
6. 6+ phases: an empirical method of prediction. Am. Mineral. 84, 650-664.
7. Fayek, M., Kyser, T.K., Ewing, R.C. & Miller, M.L. (1996): Geochemical consequences of uraninite-water interaction in an oxidizing environment. Mater. Res. Soc., Symp. Proc. 412, 1201-1208.
8. Fein, J.B., Daughney, C.J., Yee, N. & Davis, T.A. (1997): A chemical equilibrium model for metal adsorption onto bacterial surfaces. Geochim. Cosmochim. Acta 61, 3319-3328.
9. Ferris, F.G., Fyfe, W.S. & Beveridge, T.J. (1988): Metallic ion binding by Bacillus subtilis: implications for the fossilization of microorganisms. Geology 16, 149-152.
10. Finch, R.J. & Murakami, T. (1999): Systematics and paragenesis of uranium minerals. In Uranium: Mineralogy, Geochemistry and the Environment (P.C. Burns & R.J. Finch, eds.). Rev. Mineral. 38, 91-179.
11. Fowle, D.A. & Fein, J.B. (2001): Quantifying the effects of Bacillis subtilis cell walls on the precipitation of copper hydroxide from aqueous solution. Geomicrobiol. J. 18, 77-91.
12. Fowle, D.A., Fein, J.B. & Martin, A.M. (2000): Experimental study of uranyl adsorption onto Bacillus subtilis. Environ. Sci. Technol. 34, 3737-3741.
13. Frondel, C. (1956): The mineralogical composition of gummite. Am. Mineral. 41, 539-568.
14. Gorby, Y.A. & Lovley, D.A. (1993): Enzymatic uranium precipitation. Environ. Sci. Technol. 26, 205-207.
15. Hindié, E. (1997): Subcellular localization of isotopes and labelled molecules by SIMS. Proc. SIMS XI (Orlando), 113.
16. 7 occur in nature? J. Nucl. Mater. 207, 176-191.
17. 6+ phases in the weathering zone of the Bangombe U-deposit: observed and predicted mineralogy. Radiochim. Acta 90, 761-769.
18. Kelly, S.D., Kemner, K.M., Fein, J.B., Fowle, D.A., Boyanov, M.I., Bunker, B.A. & Yee, N. (2002): X-ray absorption fine structure determination of pH-dependent U-bacterial cell wall interactions. Geochim. Cosmochim. Acta 66, 3855-3871.
19. Konhauser, K.O., Schultze-Lam, S., Ferris, F.G., Fyfe, W.S., Lonostaffe, F.J. & Beveridge, T.J. (1994): Mineral precipitation by epilithic biofilms in the Speed River, Ontario, Canada. Appl. Environ. Microbiol. 60, 549-553.
20. 8 composition range. J. Nucl. Mater. 312, 21-49.
21. 8-z. J. Nucl. Mater. 312, 50-66.
22. Lechene, C., Hillion, F. & Mroz, E. (2003): Isotope ratio imaging of biological tissues with multi-isotope imaging mass spectrometry (MIMS). Proc. SIMS XIV (San Diego).
23. Lloyd, J.R., Blunt-Harris, E.L. & Lovley, D.R. (1999): The periplasmic 9,6 kDa c-type cytochrome of Geobacter sulfurreducens is not an electron shuttle to Fe(III). J. Bacteriol. 181, 7647-7649.
24. Lloyd, J.R., Chesnes, J., Glasauer, S., Bunker, D.J., Livens, F.R. & Lovley, D.R. (2002): Reduction of actinides and fission products by Fe(IH)-reducing bacteria. Geomicrobiol. J. 19, 103-120.
25. Lovley, D.R. & Phillips, E.J.P. (1988): Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron and manganese. Appl. Environ. Microbiol. 54, 1472-1480.
26. Lovley, D.R. & Phillips, E.J.P. (1992): Reduction of uranium by Desulfovibrio desulfuricans. Appl. Environ. Microbiol. 58, 85-93.
27. Lovley, D.R., Phillips, E.J.P., Gorby, Y.A. & Landa, E.R. (1991): Microbial reduction of uranium. Nature 350, 413-416.
28. Markovic, M., Parkovic, N. & Parkovic, N.D. (1988): Precipitation of ammonium uranyl phosphate trihydrate solubility and structural comparison with alkali uranyl (2+) phosphate. J. Res. Natl. Bureau Stand. USA 93, 557-563.
29. Pacholski, M.L. & Winograd, N. (1999): Imaging with mass spectrometry. Chem. Rev. 99, 2977-3006.
30. Ramseyer, G.O., Brenna, J.T., Morrison G.H. & Schwartz, R. (1984): Elemental isotopic abundance determinations of magnesium in biological materials by secondary ion mass spectrometry. Anal. Chem. 56, 402-407.
31. Scharer, J.M. & Byerley, J.J. (1989): Aspects of uranium adsorption by microorganisms. Hydrometallurgy 21, 319-329.
32. Seeliger, S., Cord-Ruwisch, R. & Schink, B. (1998): A periplasmic and extracellular c-type cytochrome of Geobacter sulfurreducens acts as a ferric ion reductase and as an electron carrier to other acceptors or to partner bacteria. J. Bacteriol. 180, 3686-3691.
33. Smith, D.K. (1984): Uranium mineralogy. In Uranium Geochemistry, Mineralogy, Geology, Exploration and Resources (B. De Vivo, F. Ippolito, G. Capaldi & P.R. Simpson, eds.). Stephen Austin/Hartford Press, London, U.K. (43-88).
34. Southam, G. (2000): Bacterial surface-mediated mineral formation. In Environmnetal Microbe-Metal Interactions (DR. Lovley, ed.).). ASM Press, Washington, D.C. (257-277).
35. Suzuki, Y. & Banfield, J.F. (1999): Geomicrobiology of uranium. In Uranium: Mineralogy, Geochemistry and the Environment (P.C. Burns & R.J. Finch, eds.). Rev. Mineral. 38, 393-432.
36. Suzuki, Y., Kelly, S.D., Kemner, K.M. & Banfield, J.F. (2002): Nanometre-size products of uranium bioreduction. Nature 419, 134.
37. Tsezos, M. & Volesky, B. (1982): The mechanism of uranium biosorption by Rhizopus arrhizus. Biotechnol. Bioengineer. 24, 385-401.
38. Utsunomiya, S. & Ewing, R.C. (2003): Application of high-angle annular dark field scanning transmission electron microscopy, scanning transmission electron microscopy - energy dispersive X-ray spectrometry, and energy-filtered transmission electron microscopy to the characterization of nanoparticles in the environment. Environ. Sci. Tech. 37, 786-791.
39. 2 at 90°C. J. Nucl. Mater. 190, 107-127.