Reproducibility testing of RAPD and SSR markers in tomato

African Journal of Biotechnology

Volumn 5, Issue 2, 2006, Pages 108-112

  Rajput, S G ^a   Wable, K J ^b   Sharma, K M ^a   Kubde, P D ^b   Mulay, S A ^b  

^a Marathwada Agriculture University   (India)

^b Bejo Sheetal Seeds Pvt Ltd   (India)

Author keywords

DNA markers; Micro satellite; RAPD; Reproducibility; SSR

Indexed keywords

DNA MARKER; MICROSATELLITE DNA; PRIMER DNA;

ALLELE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; GENE AMPLIFICATION; GENETIC ANALYSIS; NONHUMAN; PLANT BREEDING; PLANT GENETICS; RANDOM AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; REPRODUCIBILITY; SEQUENCE ANALYSIS; SEQUENCE TAGGED SITE; TOMATO;

LYCOPERSICON ESCULENTUM;

EID: 32644443124     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (17)

1. Welsh J, McClelland M (1990). Fingerprinting genomes using PCR with arbitrary primers. Nucl Acids Res 18: 7213-7218
2. Büscher N, Zyprian E, Blaich R (1993). Identification of grapevinecultivars by DNA analyses: Pitfalls of random amplified polymorphic DNA techniques using 10 mer primers. Vitis 32: 187-188.
3. Devos KM, Gale MD (1992). The use of random amplified polymorphicDNA markers in wheat. Theor. Appl. Genet. 84: 567-572
4. MacPherson JM, Eckstein PE, Scoles GJ, Gajadhar AA (1993). Variability of the random amplified polymorphic DNA assay among thermal cyclers, and effects of primer and DNA concentration. Mol Cell Probes 7: 293-299 .
5. Meunier JR, Grimont PA (1993). Factors affecting reproducibility of random amplified polymorphic DNA fingerprinting. Res. Microbiol. 144: 373-379.
6. Yu K, Pauls KP (1992).: Optimization of the PCR program for RAPD analysis. Nucl. Acids Res. 20: 2606.
7. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995): AFLP a new technique for DNA fingerprinting. Nucl. Acids Res. 23: 4407-4414.
8. Morgante M, Olivieri AM (1993). PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182.
9. Smulders MJM, Bredemeijer G, RusKortekaas W, Arens P, Vosman B (1997). Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor. Appl. Genet. 97: 264-272.
10. Penner GA, Bush A, Wise R, Kim W, Domier L, Kasha K, Laroche A, Scoles G, Molner SJ, Fedak G (1993). Reproducibility of random amplified polymorphic DNA (RAPD) analysis among laboratories. PCR Meth. Appl. 2: 341-345.
11. Skroch P, Nienhuis J (1995). Impact of scoring error and reproducibility of RAPD data on RAPD based estimates of genetic distance. Theor Appl. Genet. 91: 1086-1091.
12. Lin JJ, Kuo J, Ma J, Saunders JA, Beard HS, Macdonald MH, Kenworthy W, Ude N, Matthews F (1996). Identification of molecular markers in soybean comparing RFLP, RAPD and AFLP DNA mapping techniques. Plant Mol. Biol. Rep. 14: 156-159.
13. Huys G, Coopman R, Janssen P, Kersters K (1996). High-resolution genotypic analysis of the genus Aeromonas by AFLP fingerprinting. Int. J. Syst. Bact. 46: 572-580.
14. Thomas MR, Cain P, Scott NS (1994). DNA typing of grapevines: a universal methodology and database for describing cultivars and evaluating genetic distances. Plant Mol. Biol. 25: 939-949.
15. Schwengel DA, Jedlicka AE, Nanthakamur EJ, Weber JL, Levitt RC (1994). Comparison of fluorescence-based semi-automated genotyping ofmultiplemicrosatellite lociwith autoradiographic techniques. Genomics 22: 46-54.
16. Bowers JE, Dangi GS, Vignani R, Meredith CP (1996). Isolation and characterisation of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.) Genome 39: 628-633.
17. Zhang K, Haung N, Bennet J, Khush G (1995). PCR based marker assisted selection in rice breeding. IRRI Disccsion papers No.12.