Phylogeny and nodulation signal molecule of rhizobial populations able to nodulate common beans - Other than the predominant species Rhizobium etli - Present in soils from the northwest of Argentina

Soil Biology and Biochemistry

Volumn 38, Issue 3, 2006, Pages 573-586

  Aguilar, O Mario ^a   Veronica Lopez M ^a   Donato, Mariano ^c   Morón, Belén ^b   Eugenia Soria Diaz, M ^b   Mateos, Clemente ^b   Gil Serrano, Antonio ^b   Sousa, Carolina ^b   Megías, Manuel ^b  

^a FACULTAD DE CIENCIAS EXACTAS   (Argentina)

^b UNIVERSITY OF SEVILLE   (Spain)

^c FACULTAD DE CIENCIAS NATURALES Y MUSEO   (Argentina)

Author keywords

Bean rhizobia ecology; Nodulation factor structure; Rhizobial diversity; Symbiotic genes nodC, nodH and nifH

Indexed keywords

BIODIVERSITY; ECOLOGY; GENES;

BEAN RHIZOBIA ECOLOGY; NODULATION FACTOR STRUCTURE; RHIZOBIAL DIVERSITY; RHIZOBIUM; SYMBIOTIC GENES NODC, NODH AND NIFH;

SOILS;

LEGUME; NODULATION; PHYLOGENY; RHIZOBACTERIUM;

ARGENTINA; SOUTH AMERICA;

AGROBACTERIUM RHIZOGENES; MEDICAGO TRUNCATULA; PHASEOLUS (ANGIOSPERM); RHIZOBIACEAE; RHIZOBIUM; RHIZOBIUM ETLI; RHIZOBIUM TROPICI;

EID: 32544441251     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2005.06.011     Document Type: Article

References (35)

1. O.M. Aguilar, M.V. López, P.M. Riccillo, R.A. González, M. Pagano, D.H. Grasso, A. Pühler, and G. Favelukes Prevalence of the Rhizobium etli-like allele in genes coding for 16S rRNA among the indigenous rhizobial populations found associated with wild beans from Southern Andes in Argentina Applied and Environmental Microbiology 64 1998 3520 3524
2. O.M. Aguilar, D.H. Grasso, P.M. Riccillo, M.V. López, and E. Safer Rapid identification of bean rhizobial isolates by a nifH gene-PCR assay Soil Biology and Biochemistry 30 1998 1655 1661
3. O.M. Aguilar, O. Riva, and E. Peltzer Analysis of Rhizobium etli and of its simbiosis with wild Phaseolus vulgaris supports coevolution in centres of host diversification Proceeding of the National Academy of Sciences (USA) 101 2004 13548 13553
4. A.M. Alippi, and O.M. Aguilar Characterization of isolates of Paenibacillus larvae subsp. larvae from diverse geographical origin by the polymerase chain reaction and BOX primers Journal of Invertebrate Pathology 72 1998 21 27
5. N. Amarger Rhizobia in the field Advances in Agronomy 73 2001 109 168
6. W-M. Chen, L. Moulin, C. Bontemps, P. Vandamme, G. Béna, and C. Boivin-Masson Legume symbiotic nitrogen fixation by β-proteobacteria is widespresad in nature Journal of Bacteriology 185 2003 7266 7272
7. W. D'Haeze, and M. Holsters Nod factor structures, responses, and perception during initiation of nodule development Glycobiology 12 2002 79R 105R
8. F.J. de Bruijn Use of repetitive (repetitive extragenic palindromic and enterobacterial repetitive intergeneric consensus) sequences and the polymerase chain reaction to fingerprint the genomes of Rhizobium meliloti isolates and other soil bacteria Applied and Environmental Microbiology 61 1992 507 512
9. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
10. D. Haukka, K. Lindstrom, and J.P.W. Young Three phylogenetic groups of nodA and nifH genes in Sinorhizobium and Mesorhizobium isolates from leguminous trees growing in Africa and Latin America Applied and Environmental Microbiology 64 1998 419 426
11. H. Hennecke, B. Kaluza, B. Thöny, M. Fuhrmann, W. Ludwig, and E. Stackebrandt Concurrent evolution of nitrogenase genes and 16S rRNA in Rhizobium species and other nitrogen fixing bacteria Archives of Microbiology 142 1985 42 348
12. J. Kami, V. Becerra Velásquez, D.G. Debouck, and P. Gepts Identification of presumed ancestral DNA sequences of phaseolin in Phaseolus vulgaris Proceeding of the National Academy of Sciences (USA) 92 1995 1101 1104
13. Laguerre, G., Allard, M.R., Revoy, F., Amarger, N. 1994. Rapid identification of rhizobia by restriction length polymorphism analysis of PCR-amplified 16S rRNA genes. Applied and Environmental Microbiology 60, 56-63.
14. G. Laguerre, S.M. Nour, V. Macheret, J. Sanjuan, P. Drouin, and A. Amarger Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts Microbiology 147 2001 981 993
15. J. Lorquin, G. Lortet, M. Ferro, N. Mear, J-C. Promé, and C. Boivin Sinorhizobium teranga bv. acaciae ORS1073 and Rhizobium spp. Strain ORS1001, two distantly related Acacia-nodulating strains, produce similar Nod factors that are O carbamoylated, N methylated, and mainly sulphated Journal of Bacteriology 179 1997 3079 3083
16. J. Lorquin, G. Lortet, M. Ferro, N. Méar, B. Dreyfus, J-C. Promé, and C. Boivin Nod factors from Shinorhizobium saheli and S. teranga bv. sesbania are both arabinosylated and fucosylated, a structural feature specific to Sesbania rostrata symbionts Molecular Plant-Microbe Interactions 10 1997 879 890
17. D.R. Maddison, and W.P. Maddison MacClade version 4: analysis of phylogeny and character evolution 2000 Sinauer Associates Sunderland Massachussets
18. E. Martínez-Romero Diversity of Rhizobium-Phaseolus symbiosis: overview and perspectives Plant Soil 252 2003 11 23
19. E. Martínez-Romero, and J. Caballero-Mellado Rhizobium phylogenies and bacterial genetic diversity Critical Review in Plant Sciences 15 1996 113 140
20. C. Pacios-Bras, Y.E.M. van der Burgt, A.M. Deelder, P. Vinuesa, D. Werner, and H.P. Spaink Novel lipochitin oligosaccharide structures produced by Rhizobium etli KIM5s Carbohydrates Research 337 2002 1193 1202
21. X. Perret, C. Staehelin, and W.J. Broughton Molecular basis of symbiotic promiscuity Microbiology and Molecular Biology Review 64 2000 180 201
22. C. Silva, P. Vinuesa, L.E. Eguiarte, E. Martínez-Romero, and V. Souza Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: population genetics and biogeographic implications Applied and Environmental Microbiology 69 2003 884 893
23. M.E. Soria-Díaz, P. Tejero-Mateo, J.L. Espartero, M.A. Rodríguez-Carvajal, B. Morón, C. Sousa, M. Megías, N. Amarger, J. Thomas Oates, and A.M. Gil-Serrano Structural determination of the lipo-chitin oligosaccharide nodulation signals produced by Rhizobium giardinii bv. giardinii H152 Carbohydrates Research 338 2003 237 250
24. H.P. Spaink, A. Aarts, G. Stacey, G.V. Bloemberg, B.J.J. Lugtenberg, and E.P. Kennedy Detection and separation of Rhizobium and Bradyrhizobium Nod metabolites using thin-layer chromatography Molecular Plant-Microbe Interactions 5 1992 72 80
25. H.P. Spaink, G.V. Bloemberg, A.A.N. van Brussel, B.J.J. Lugtenberg, K.M.G.M. van der Drift, J. Haverkammp, and J.E. Thomas-Oates Host specificity of Rhizobium leguminosarum is determined by the hydrophobicity of highly unsaturated fatty acyl moieties of the nodulation factors Molecular Plant-Microbe Interactions 8 1995 155 164
26. Swofford DL. 1998. PAUP*. Phylogenetic Analysis Using Parsimony (* and other methods). Version 4. Sinauer Associates, Sunderland, Massachussets.
27. J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Research 25 1997 4876 4882
28. M. Treilhou, M. Ferro, C. Monteiro, V. Poinsot, S. Jabbouri, C. Kanoni, D. Promé, and J-C. Promé Differentiation of O-Acetyl and O-Carbamoyl ester by decomposition of their oxonium ions. Application to the structure of the nonreducing terminal residue of nod factors Journal of American Society of Mass Spectrometry 11 2000 301 311
29. T. Ueda, Y. Suga, N. Yahiro, and T. Matsuguchi Phylogeny of Sym plasmids of rhizobia by PCR-based sequencing of a nodC segment Journal of Bacteriology 177 1995 468 472
30. P. van Berkum, Z. Terefework, L. Paulin, S. Suomalainen, K. Lindstrom, and B.D. Eardly Discordant phylogenies within the rrn loci of rhizobia Journal of Bacteriology 185 2003 2988 2998
31. J.M. Vincent A manual for the practical study of the root-nodule bacteria IBP Handbook No. 15 1970 Blackwell Scientific Publications Oxford, UK
32. F. Waelkens, T. Voets, K. Vlassak, J. Vanderleyden, and P. Van Rhijn The nodS gene of Rhizobium tropici CIAT899 is necessary for nodulation of Phaseolus vulgaris and Leucaena leucocephala Molecular Plant-Microbe Interactions 8 1995 147 154
33. T.S. Walker, H.P. Bais, E. Grotewold, and J.M. Vivanco Root exudation and rhizosphere biology Plant Physiology 132 2003 44 51
34. A. Willems, and M.D. Collins Phylogenetic analysis of rhizobia and agrobacteria based on 16S rRNA gene sequences International Journal of Systematic Bacteriology 43 1993 305 313
35. J.M. Young, L.D. Kuykendall, E. Martínez-Romero, A. Kerr, and H. Sawada revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola, R. vitis International Journal of Systematic Microbiology 51 2001 89 103