GenoMiner: A tool for genome-wide search of coding and non-coding conserved sequence tags

Bioinformatics

Volumn 22, Issue 4, 2006, Pages 497-499

  Castrignanò, Tiziana ^a   De Meo, Paolo D'Onorio ^a   Grillo, Giorgio ^b   Liuni, Sabino ^b   Mignone, Flavio ^c   Talamo, Ivano Giuseppe ^a   Pesole, Graziano ^b,c  

^a CASPUR   (Italy)

^b CNR   (Italy)

^c UNIVERSITY OF MILAN   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

5' UNTRANSLATED REGION; ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; COMPUTER INTERFACE; COMPUTER PREDICTION; COMPUTER PROGRAM; GENETIC TRANSCRIPTION; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RELIABILITY; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

VERTEBRATA;

EID: 32544431587     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti754     Document Type: Article

References (7)

1. Castrignano,T. et al. (2004) CSTminer: A web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison. Nucleic Acids Res., 32 (Web Server issue), W624-W627.
2. Hubbard,T. et al. (2005) Ensembl 2005. Nucleic Acids Res., 33 (Database issue), D447-D453.
3. Karolchik,D. et al. (2003) The UCSC Genome Browser Database. Nucleic Acids Res., 31, 51-54.
4. Kent,W.J. (2002) BLAT - the BLAST-like alignment tool. Genome Res., 12, 656-664.
5. Mignone,F. et al. (2003) Computational identification of protein coding potential of conserved sequence tags through cross-species evolutionary analysis. Nucleic Acids Res., 31, 4639-4645.
6. Miller,W. et al. (2004) Comparative genomics. Annu. Rev. Genomics Hum. Genet., 5, 15-56.
7. Okazaki,Y. et al. (2002) Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature, 420, 563-573.