Biodegradation of all stereoisomers of the EDTA substitute iminodisuccinate by agrobacterium tumefaciens BY6 requires an epimerase and a stereoselective C-N lyase

Applied and Environmental Microbiology

Volumn 70, Issue 7, 2004, Pages 3941-3947

  Cokesa, Zeljko ^a   Knackmuss, Hans Joachim ^a   Rieger, Paul Gerhard ^a  

^a UNIVERSITY OF STUTTGART   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE EARTH METALS; BIODEGRADATION; COMPLEXATION; ENZYMES; ISOMERS;

STEREOISOMERS;

MICROBIOLOGY;

CALCIUM ION; CARBON; CARBON NITROGEN LYASE; DEXTRO ASPARTIC ACID; EDETIC ACID; EPIMERASE; FUMARIC ACID; HEAVY METAL; IMINODISUCCINATE; IRON; LYASE; MAGNESIUM ION; NITROGEN; SUCCINIC ACID; UNCLASSIFIED DRUG;

MICROBIOLOGY;

ACTIVATED SLUDGE; AGROBACTERIUM TUMEFACIENS BY6; ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIUM ISOLATE; BIODEGRADATION; ENERGY RESOURCE; ISOMER; MANOMETRIC RESPIROMETRY TEST; MANOMETRY; MINERALIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; RHIZOBIUM RADIOBACTER; STEREOISOMERISM; STEREOSPECIFICITY;

AMINO ACID SEQUENCE; AMINO ACIDS; BIODEGRADATION, ENVIRONMENTAL; CARBON-NITROGEN LYASES; EDETIC ACID; MOLECULAR SEQUENCE DATA; RACEMASES AND EPIMERASES; RHIZOBIUM RADIOBACTER; STEREOISOMERISM; SUCCINATES;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

EID: 3242775629     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.70.7.3941-3947.2004     Document Type: Article

References (27)

1. Altschul, S. F., T. L. Madden, A. A. Schäffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI_BLAST; a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Bayer AG. 2001. Safety data sheet 857037/10, Baypure CX 100 solid. Bayer AG, Leverkusen, Germany.
3. Bayer AG. 1998. IDS Na-Salz. Eine neue umweltfreundliche Alternative zu klassischen Komplexierungsmitteln. Bayer AG, Leverkusen, Germany.
4. Bradford, M. M. 1976. A rapid and sensitive method for the quantification of microgram quantities of proteins utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
5. Bucheli-Witschel, M., and T. Egli. 2001. Environmental fate and microbial degradation of aminopolycarboxylic acids. FEMS Microbiol. Rev. 25:69-106.
6. Cardinale, G. J., and R. H. Abeles. 1968. Purification and mechanism of action of proline racemase. Biochemistry 7:3970-3978.
7. Cokesa, Z., S. Lakner, H.-J. Knackmuss, and P.-G. Rieger. A stereoselective carbon-nitrogen lyase from Ralstonia sp. SLRS7 cleaves two of three isomers of iminodisuccinate. Biodegradation, in press.
8. Einarsson, S., and B. Josefsson. 1987. Separation of amino acid enantiomers and chiral amines using precolumn derivatization with (+)-1-(9-fluorenyl) ethylchloroformate and reversed-phase liquid chromatography. Anal. Chem. 59:1191-1195.
9. Finlay, T. H., and E. Adams. 1970. Kinetic and structural studies of hydroxyproline 2-epimerase. J. Biol. Chem. 245:5248-5260.
10. Kari, F. G., S. U. Hilger, and S. Cannonica. 1995. Determination of the reaction quantum yield for the photochemical degradation of Fe(III)-EDTA- implications for the environmental fate of EDTA in surface waters. Environ. Sci. Technol. 29:1008-1017.
11. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
12. Lauff, J. J., D. B. Steele, L. A. Coogan, and J. M. Breitfeller. 1990. Degradation of the ferric chelate of EDTA by a pure culture of an Agrobacterium sp. Appl. Environ. Microbiol. 56:3346-3353.
13. Nakajima, N., K. Tanizawa, H. Tanaka, and K. Soda. 1986. Cloning and expression in Escherichia coli of the glutamate racemase gene from Pediococcus pentosaceus. Agric. Biol. Chem. 50:2823-2830.
14. Nörtemann, B. 1992. Total degradation of EDTA by mixed cultures and a bacterial isolate. Appl. Environ. Microbiol. 58:671-676.
15. Nowack, B., H. Xue, and L. Sigg. 1997. Influence of natural and anthropogenic ligands on metal transport during infiltration of river water to ground-water. Environ. Sci. Technol. 31:866-872.
16. Nowack, B., F. G. Kari, and H. G. Krüger. 2001. The remobilization of metals from iron oxides and sediments by metal-EDTA complexes. Water Air Soil Pollut. 125:243-257.
17. Organization for Economic Cooperation and Development. 1993. Guidelines for testing of chemicals. The OECD Expert Group on Degradation and Accumulation. Ready Biodegradability 301 F: manometric respirometry test. Organization for Economic Cooperation and Development, Paris, France.
18. 12-Bedürfnis phototropher Schwefelbakterien. Arch. Mikrobiol. 55:245-256.
19. Rahmanian, M., Waller, G. R., and W. G. Smith. 1971. Biosynthesis of D-aspartic acid by Streptococcus faecalis. J. Biol. Chem. 246:823-830.
20. Reinecke, F., T. Groth, K.-P. Heise, W. Joentgen, N. Müller, and A. Steinbüchel. 2000. Isolation and characterization of an Achromobacter xylosoxidans strain B3 and other bacteria capable to degrade the synthetic chelating agent iminodisuccinate. FEMS Microbiol. Lett. 188:41-46.
21. Rudnick, G., and R. H. Abeles. 1975. Reaction mechanism and structure of the active site of proline racemase. Biochemistry 14:4515-4522.
22. Snell, E. E., and S. J. Di Mari. 1970. Kinetics and mechanism, p. 353-370. In P. D. Boyer, H. Lardy, and K. Myrbäck (ed.), The enzymes, vol. 2. Academic Press, New York, N.Y.
23. Wieseman, J. S., and J. S. Nichols. 1984. Purification and properties of diaminopimelic acid epimerase from Escherichia coli. J. Biol. Chem. 259: 8907-8914.
24. Witschel, M., S. Nagel, and T. Egli. 1997. Identification of the two-enzyme system catalyzing oxidation of EDTA in the EDTA-degrading bacterial strain DSM 9103. J. Bacteriol. 179:6937-6943.
25. Witschel, M., and T. Egli. 1998. Purification and characterization of a lyase from the EDTA-degrading bacterial strain DSM 9103 that catalyzes the splitting of [S,S]-ethylenediaminedisuccinate, a structural isomer of EDTA. Biodegradation 8:419-428.
26. Witschel, M., T. Egli, A. J. B. Zehnder, E. Wehrli, and M. Spycher. 1999. Transport of EDTA into cells of the EDTA-degrading bacterial strain DSM 9103. Microbiology 145:973-983.
27. Yamauchi, T., S.-Y. Choi, H. Okada, M. Yohda, H. Kumagai, N. Esaki, and K. Soda. 1992. Properties of aspartate racemase, a pyridoxal 5′-phosphate-independent amino acid racemase. J. Biol. Chem. 267:18361-18364.