Intraspecific diversity within Diaporthe helianthi: Evidence from rDNA intergenic spacer (IGS) sequence analysis

Mycopathologia

Volumn 157, Issue 3, 2004, Pages 317-326

  Pecchia, Susanna ^a   Mercatelli, Elisabetta ^a   Vannacci, Giovanni ^a  

^a UNIVERSITY OF PISA   (Italy)

Author keywords

Diaporthe helianthi; IGS; Phomopsis helianthi; Sequences; Stem canker; Sunflower

Indexed keywords

DIAPORTHE HELIANTHI; FUNGI; HELIANTHUS; MYXOGASTRIA; PHOMOPSIS;

FUNGAL DNA; RIBOSOMAL SPACER DNA;

ARTICLE; ASCOMYCETES; CHEMISTRY; GENETIC VARIABILITY; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SUNFLOWER;

ASCOMYCOTA; BASE SEQUENCE; DNA, FUNGAL; DNA, RIBOSOMAL SPACER; HELIANTHUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; VARIATION (GENETICS);

EID: 3242690841     PISSN: 0301486X     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:MYCO.0000024185.66158.7e     Document Type: Article

References (54)

1. Mihaljčević M, Petrov M, Muntañola-Cvetković M. Phomopsis sp., a new parasite of sunflower in Yugoslavia. Savr Poljoprivreda 1980; 28: 531-539.
2. Muntañola-Cvetković M, Mihaljčević M, Petrov M. On the identity of the causative agent of a serious Phomopsis-Diaporthe disease in sunflower plants. Nova Hedwigia 1981; 34: 417-435.
3. Mihaljčević M, Vukojević J. Diaporthe (Phomopsis) spp. on weeds as possible causative agents of sunflower stem cancer in the Vojvodina province. Helia 1994; 17: 39-48.
4. Laville J. Cahier technique tournesol: maladie. Paris: CETIOM, 1986.
5. Demazure B. Phomopsis: du progress dans les varietés. Grande Cultures Infos 1995; 41: 39-41.
6. Diaz FA, Ortegon MA. Influence of sunflower stem canker (Diaporthe helianthi) on seed quality and yield during seed development. Helia 1997; 20: 57-62.
7. Zazzerini A, Tosi L, Losavio N. Rilievi fitopatologici su varietà di girasole a confronto nel 1987. L'Informatore Agrario 1988; 13: 85-88.
8. Rossi V, Girometta B. Dynamic of sunflower phenology in relation to susceptibility toward Diaporthe helianthi. J Plant Pathol 2001; 83: 242.
9. Rossi V, Battilani P, Languasco L, Girometta B. Studio sullo sviluppo potenziale di Diaporthe helianthi negli areali elianticoli italiani. Notiziario sulla Protezione delle Piante 2002; 15: 409-410.
10. Vear F, Garreyn M, Tourvieille de Labrouhe D. Inheritance of resistance to Phomopsis (Diaporthe helianthi) in sunflowers. Plant breeding 1997; 116: 277-281.
11. Bertrand F, Tourvieille de Labrouhe D. Phomopsis tournesol: tests de selection. Informations Techniques CETIOM No. 98 1/1987.
12. Degener J, Melchinger AE, Hahn V. Resistance in the leaf and stem of sunflower after infection with two isolates of Phomopsis. Plant Breeding 1999; 118: 405-410.
13. Benomar A. A study of the mechanisms and genetics of sunflower resistance to Phomopsis (Diaporthe helianthi). International sunflower Yearbook 1995; 80-81.
14. Viguié A, Vear F, Tourvieille de Labrouhe D. Interactions between French isolates of Phomopsis/Diaporthe helianthi Munt.-Cvet. et al. and sunflower (Helianthus annuus L.) genotypes. Eur J Plant Pathol 1999; 105: 693-702.
15. Vannacci G, Pecchia S, Cacciola SO, Zazzerini A. Studi sulla variabilità di isolati di Diaporthe helianthi. Petria 1996; 6: 264-265.
16. Zazzerini A, Tosi L, Monotti M. Evidence of pathogenicity of Phomopsis helianthi strains of different origin. In: Huajun X, ed. Proceedings of the 14th International Sunflower Conference, Beijing-Shenyang, P.R. China, 1996: 112-113.
17. Pecchia S, Mercatelli E, Trinchello D, Vannacci G. Assessment of genetic variation within Diaporthe helianthi by PCR analysis of the IGS region of ribosomal DNA. In: SIPaV ed. Proceedings of the 5th Congress of the European Foundation for Plant Pathology 'Biodiversity in Plant Pathology', Taormina - Giardini Naxos, Italy, 2000: 124-126.
18. Bridge PD, Arora DK. Interpretation of PCR methods for species definition. In: Bridge PD, Arora DK, Reddy CA, Elander RP, eds. Applications of PCR in mycology. Wallingford, UK: CAB International, 1998: 63-84.
19. Appel DJ, Gordon TR. Relationships among pathogenic and nonpathogenic isolates of Fusarium oxysporum based on the partial sequence of the intergenic spacer region of the ribosomal DNA. Mol Plant Microbe In 1996; 9: 125-138.
20. Selosse MA, Costa G, di Battista C, Le Tacon F, Martin F. Meiotic segregation and recombination of the intergenic spacer of the ribosomal DNA in the ectomycorrhizal basidiomycete Laccaria bicolor. Curr Genet 1996; 30: 332-337.
21. Jennings JM, Newton AC, Buck KW. Detection of polymorphism in Puccinia hordei using RFLP and RAPD markers, differential cultivars and analysis of the intergenic spacer region of rDNA. J Phytopathol 1997; 145: 511-519.
22. Guidot A, Lumini E, Debaud JC, Marmeisse R. The nuclear ribosomal DNA intergenic spacer as a target sequence to study intraspecific diversity of the ectomycorrhizal basidiomycete Hebeloma cylindrosporum directly on Pinus root systems. Appl Environ Microb 1999; 65: 903-909.
23. Pramateftaki PV, Antoniou PP, Typas MA. The complete DNA sequence of the nuclear ribosomal RNA gene complex of Verticillium dahliae: intraspecific heterogeneity within the intergenic spacer region. Fungal Genet Biol 2000; 29: 19-27.
24. Pecchia S, Vergara M, Cristani C, Mercatelli E, Regis C, Vannacci G. Genetic variability in differently conserved genomic regions of Diaporthe helianthi isolates of different geographic origin. In: Vannacci G., Sarrocco S, eds. Proceedings of the 6th European Conference on Fungal Genetics, Pisa, Italy, 2002: 440.
25. Pecchia S, Mercatelli E, Vannacci G. Intraspecific variability in Diaporthe helianthi: study of sequences of the IGS region of ribosomal DNA. J Plant Pathol 2001; 83: 239.
26. Pecchia S. Panattoni A, Fanti S, Vannacci G. Protoplast isolation and regeneration from wild-types and mutants of the chestnut blight pathogen Cryphonectria parasitica (Murrill) Barr. Med Fac Landbouww Rijksuniv Gent 1991; 56/2b: 443-456.
27. Kim WK, Mauthe W, Hausner G, Klassen GR. Isolation of high molecular weight DNA and double-stranded RNAs from fungi. Can J Botany 1990; 68: 1898-1902.
28. Pecchia S, Mercatelli E, Vannacci G. PCR amplification and characterization of the intergenic spacer region of the ribosomal DNA in Pyrenophora graminea. FEMS Microbiol Lett 1998; 166: 21-27.
29. Carbone I, Kohn LM. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia 1999; 91: 553-556.
30. Peters K. Vised (Visual Software Editor, Version 1.1) 1996. http://iubio.bio.indiana.edu/soft/molbio/ibmpc/vised11.exe
31. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 24: 4876-1882.
32. Kumar S, Tamura K, Jakobsen IB, Nei M. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 2001; 17: 1244-1245.
33. Nei M, Kumar S. Molecular evolution and phylogenetics. New York: Oxford University Press, 2000.
34. Saitou M, Nei M. A Neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 44: 406-425.
35. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39: 783-791.
36. Edel V, Steinberg C, Avelange I, Laguerre G, Alabouvette C. Comparison of three molecular methods for the characterization of Fusarium oxysporum strains. Phytopathology 1995; 85: 579-585.
37. Pipe ND, Chandler D, Bainbridge BW, Heale JB. Restriction length polymorphisms in the ribosomal RNA gene complex of isolates of the entomopathogenic fungus Metarhizium anisopliae. Mycol Res 1995; 99: 485-491.
38. Mahuku GS, Hsiang T, Yang L. Genetic diversity of Microdochium nivale isolates from turfgrass. Mycol Res 1998; 102: 559-567.
39. Diaz MR, Boekhout T, Theelen B, Fell JW. Molecular sequence analyses of the intergenic spacer (IGS) associated with rDNA of the two varieties of the pathogenic yeast, Cryptococcus neoformans. Syst Appl Microbiol 2000; 23: 535-545.
40. Mahuku GS, Platt HW. Molecular evidence that Verticillium albo-atrum Grp 2 isolates are distinct from V. albo-atrum Grp 1 and V. tricorpus. Mol Plant Pathol 2002; 3: 71-79.
41. Hillis DM, Dixon MT. Ribosomal DNA: molecular evolution and phylogenetic inference. Q Rev Biol 1991; 66: 411-453.
42. Says-Lesage V, Roeckel-Drevet P, Viguié A, Tourvieille J, Nicolas P, Tourvieille de Labrouhe D. Molecular variability within Diaporthe/Phomopsis helianthi from France. Phytopathology 2002; 92: 308-313.
43. Mayer D, Mithen R, Lewis BG, Vos P, Oliver RP. The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycol Res 1996; 100: 1107-1111.
44. Piercey-Normore MD, Egger KN. Identification and genotypic characterization of filamentous fungi. In: Talbot N, ed. Molecular and cellular biology of filamentous fungi. New York: Oxford University Press, 2001: 1-22.
45. Rekab D, Cacciola SO, Firrao G, Pappalardo P. A taxonomic study on Diaporthe helianthi. In: Vannacci G, Sarrocco S, eds. Proceedings of the 6th European Conference on Fungal Genetics, Pisa, Italy, 2002: 407.
46. Reggio C, Vinale F, Zoina A, Del Sorbo G. Studies on RFLP and atp6 gene sequence polymorphisms in mtDNA of the phytopathogenic fungus Diaporthe helianthi. In: Vannacci G, Sarrocco S, eds. Proceedings of the 6th European Conference on Fungal Genetics, Pisa, Italy, 2002: 439.
47. Pollastro S, Giampaolo C, Natale P, Abbatecola A, Faretra F. RAPD analysis in Diaporthe helianthi. In: Vannacci G, Sarrocco S, eds. Proceedings of the 6th European Conference on Fungal Genetics, Pisa, Italy, 2002: 431.
48. Rehner SA, Uecker FA. Nuclear ribosomal internal transcribed spacer phylogeny and host diversity in the coelomycete Phomopsis. Can J Botany 1994; 72, 1666-1674.
49. Champion R. Identifier les champignons transmis par les semences. Paris: INRA Editions, 1997.
50. Slyusar' EL, Bochkarev NI. Phomopsis and seed quality. Zashchita Karantin Rastenić 1997; 8: 30-31.
51. Smetnik AI, Aleksandrov IN, Skripka OV, Izmalkova AG. Sunflower seeds as a way of preservation of Phomopsis infection. Zashchita Karantin Rastenić 1998; 1: 35-36.
52. Cockerell V. New and priority seedborne diseases in Western Europe. In: Hutchins JD, Reeves JC, eds. Seed health testing: progress towards the 21st century. Wallingford, UK: CAB International, 1997: 1-10.
53. Delos M, Moinard J. Évolution du Phomopsis du tournesol en France: un bref historique. Phytoma 1995; 473: 22-24.
54. Piven' VT, Dolzhenko EG, Alifirova TP. Production of perithecium of Phomopsis on seeds of sunflower in laboratory conditions. Zashchita Karantin Rastenić 1999; 9: 24-26.