Nineteen nucleotides in the variable region of 3′ non-translated region are dispensable for the replication of dengue type 1 virus in vitro

Virus Research

Volumn 116, Issue 1-2, 2006, Pages 38-44

  Tajima, Shigeru ^a   Nukui, Yoko ^a,b   Ito, Mikako ^a   Takasaki, Tomohiko ^a   Kurane, Ichiro ^a  

^a NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

3 NTR; cDNA clone; Dengue type 1 virus

Indexed keywords

COMPLEMENTARY DNA; NUCLEOTIDE;

3' UNTRANSLATED REGION; ANIMAL CELL; ARTICLE; CONTROLLED STUDY; DENGUE VIRUS; GENE DELETION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; IMMUNOBLOTTING; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; RAT; VIROGENESIS; VIRUS RECOMBINANT; VIRUS REPLICATION;

3' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; CERCOPITHECUS AETHIOPS; DENGUE VIRUS; DNA, COMPLEMENTARY; HUMANS; MOLECULAR SEQUENCE DATA; PLAQUE ASSAY; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE DELETION; VERO CELLS; VIRUS REPLICATION;

ANIMALIA; DENGUE VIRUS;

EID: 32344447059     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2005.08.015     Document Type: Article

References (29)

1. J.E. Bryant, P.F. Vasconcelos, R.C. Rijnbrand, J.P. Mutebi, S. Higgs, and D.T. Barrett Size heterogeneity in the 3′ noncoding region of South American isolates of yellow fever virus J. Virol. 79 2005 3807 3821
2. T.S. Gritsun, K. Venugopal, P.M. Zanotto, M.V. Mikhailov, A.A. Sall, E.C. Holmes, I. Polkinghorne, T.V. Frolova, V.V. Pogodina, V.A. Lashkevich, and E.A. Gould Complete sequence of two tick-borne flaviviruses isolated from Siberia and the UK: analysis and significance of the 5′ and 3′-UTRs Virus Res. 49 1997 27 39
3. R.C. Gualano, M.J. Pryor, M.R. Cauchi, P.J. Wright, and A.D. Davidson Identification of a major determinant of mouse neurovirulence of dengue virus type 2 using stably cloned genomic-length cDNA J. Gen. Virol. 79 1998 437 446
4. D.J. Gubler Dengue and dengue hemorrhagic fever Clin. Microbiol. Rev. 11 1998 480 496
5. C.S. Hahn, Y.S. Hahn, C.M. Rice, E. Lee, L. Dalgarno, E.G. Strauss, and J.H. Strauss Conserved elements in the 3′ untranslated region of flavivirus RNAs and potential cyclization sequences J. Mol. Biol. 198 1987 33 41
6. S.B. Halstead Pathogenesis of dengue: challenges to molecular biology Science 239 1988 476 481
7. S.B. Halstead Epidemiology of dengue and dengue hemorrhagic fever D.J. Gubler G. Kuno Dengue and Dengue Hemorrhagic fever 1997 CBA International Oxon, UK 23 44
8. K.L. Holden, and E. Harris Enhancement of dengue virus translation: role of the 3′ untranslated region and the terminal 3′ stem-loop domain Virology 329 2004 119 133
9. A.A. Khromykh, N. Kondratieva, J.Y. Sgro, A. Palmenberg, and E.G. Westaway Significance in replication of the terminal nucleotides of the flavivirus genome J. Virol. 77 2003 10623 10629
10. A.A. Khromykh, H. Meka, K.J. Guyatt, and E.G. Westaway Essential role of cyclization sequences in flavivirus RNA replication J. Virol. 75 2001 6719 6728
11. R.M. Kinney, S. Butrapet, G.J. Chang, K.R. Tsuchiya, J.T. Roehrig, N. Bhamarapravati, and D.J. Gubler Construction of infectious cDNA clones for dengue 2 virus: strain 16681 and its attenuated vaccine derivative, strain PDK-53 Virology 230 1997 300 308
12. I. Kurane, and F.A. Ennis Immunopathogenesis of dengue virus infections D.J. Gubler G. Kuno Dengue and Dengue Hemorrhagic fever 1997 CBA International Oxon, UK 273 290
13. C.J. Lai, B.T. Zhao, H. Hori, and M. Bray Infectious RNA transcribed from stably cloned full-length cDNA of dengue type 4 virus Proc. Natl. Acad. Sci. U.S.A. 88 1991 5139 5143
14. B.D. Lindenbach, and C.M. Rice Flaviviridae: the viruses and their replication 4th ed. D.M. Knipe P.M. Howley Fields Virology 991 2001 Lippincott Willams & Wilkins Philadelphia 991 1041
15. M.K. Lo, M. Tilgner, K.A. Bernard, and P.Y. Shi Functional analysis of mosquito-borne flavivirus conserved sequence elements within 3′ untranslated region of West Nile virus by use of a reporting replicon that differentiates between viral translation and RNA replication J. Virol. 77 2003 10004 10014
16. S.P. Ma, Y. Yoshida, Y. Makino, M. Tadano, T. Ono, and M. Ogawa Short report: a major genotype of Japanese encephalitis virus currently circulating in Japan Am. J. Trop. Med. Hyg. 69 2003 151 154
17. C.W. Mandl, H. Holzmann, T. Meixner, S. Rauscher, P.F. Stadler, S.L. Allison, and F.X. Heinz Spontaneous and engineered deletions in the 3′ noncoding region of tick-borne encephalitis virus: construction of highly attenuated mutants of a flavivirus J. Virol. 72 1998 2132 2140
18. Markoff, L., 2003. 5′ and 3′ NCRs in Flavivirus RNA. In: Chambers, T.J., Monath, T.P. (Eds.), Flaviviruses, Advance Virus Research, vol. 60. Elsevier.
19. R. Men, M. Bray, D. Clark, R.M. Chanock, and C.J. Lai Dengue type 4 virus mutants containing deletions in the 3′ noncoding region of the RNA genome: analysis of growth restriction in cell culture and altered viremia pattern and immunogenicity in rhesus monkeys J. Virol. 70 1996 3930 3937
20. J.H. Nam, S.L. Chae, S.Y. Won, E.J. Kim, K.S. Yoon, B.I. Kim, Y.S. Jeong, and H.W. Cho Short report: genetic heterogeneity of Japanese encephalitis virus assessed via analysis of the full-length genome sequence of a Korean isolate Am. J. Trop. Med. Hyg. 65 2001 3883 3892
21. P.T. Nga, M. del Carmen Parquet, V.D. Cuong, S.P. Ma, F. Hasebe, S. Inoue, Y. Makino, M. Takagi, V.S. Nam, and K. Morita Shift in Japanese encephalitis virus (JEV) genotype circulating in northern Vietnam: implications for frequent introductions of JEV from Southeast Asia to East Asia J. Gen. Virol. 85 2004 1625 1631
22. S. Polo, G. Ketner, R. Levis, and B. Falgout Infectious RNA transcripts from full-length dengue virus type 2 cDNA clones made in yeast J. Virol. 71 1997 5366 5374
23. B.S. Puri, S. Polo, C.G. Hayes, and B. Falgout Construction of a full length infectious clone for dengue-1 virus western pacific, 74 strain Virus Genes 20 2000 57 63
24. L. Rosen The emperor's new clothes revises, or reflections on the pathogenesis of dengue hemorrhagic fever Am. J. Trop. Med. Hyg. 26 1997 337 343
25. R. Sriburi, P. Keelapang, T. Duangchinda, S. Pruksakorn, N. Maneekarn, P. Malasit, and N. Sittisombut Construction of infectious dengue 2 virus cDNA clones using high copy number plasmid J. Virol. Methods 92 2001 71 82
26. M. Tilgner, T.S. Deas, and P.Y. Shi The flavivirus-conserved penta-nucleotide in the 3′ stem-loop of the West Nile virus genome requires a specific sequence and structure for RNA synthesis, but not for viral translation Virology 331 2005 375 386
27. M. Tilgner, and P.Y. Shi Structure and function of the 3' terminal six nucleotides of the west nile virus genome in viral replication J. Virol. 78 2004 8159 8171
28. E. Wang, S.C. Weaver, R.E. Shope, R.B. Tesh, D.M. Watts, and A.D. Barrett Genetic variation in yellow fever virus: duplication in the 3′ noncoding region of strain from Africa Virology 225 1996 274 281
29. D.K. Yang, B.H. Kim, C.H. Kweon, J.H. Kwon, S.I. Lim, and H.R. Han Molecular characterization of full-length genome of Japanese encephalitis virus (KV1899) isolated from pigs in Korea J. Vet. Sci. 5 2004 197 205