메뉴 건너뛰기




Volumn 44, Issue 2, 2006, Pages 536-546

Use of PCR-restriction enzyme pattern analysis and sequencing database for hsp65 gene-based identification of Nocardia species

Author keywords

[No Author keywords available]

Indexed keywords

HEAT SHOCK PROTEIN 65; RESTRICTION ENDONUCLEASE; RNA 16S;

EID: 32344442232     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.44.2.536-546.2006     Document Type: Article
Times cited : (131)

References (35)
  • 3
    • 0034879415 scopus 로고    scopus 로고
    • Identification of 54 mycobacterial species by PCR-restriction fragment length polymorphism analysis of the hsp65 gene
    • Brunello, F., M. Ligozzi, E. Cristelli, S. Bonora, E. Tortoli, and R. Fontana. 2001. Identification of 54 mycobacterial species by PCR-restriction fragment length polymorphism analysis of the hsp65 gene. J. Clin. Microbiol. 39:2799-2806.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 2799-2806
    • Brunello, F.1    Ligozzi, M.2    Cristelli, E.3    Bonora, S.4    Tortoli, E.5    Fontana, R.6
  • 4
    • 0023199846 scopus 로고
    • High-performance liquid chromatography analysis of mycolic acids as an aid in laboratory identification of Rhodococcus and Nocardia species
    • Butler, W. R., J. O. Kilburn, and G. P. Kubica. 1987. High-performance liquid chromatography analysis of mycolic acids as an aid in laboratory identification of Rhodococcus and Nocardia species. J. Clin. Microbiol. 25:2126-2131.
    • (1987) J. Clin. Microbiol. , vol.25 , pp. 2126-2131
    • Butler, W.R.1    Kilburn, J.O.2    Kubica, G.P.3
  • 5
    • 5644227319 scopus 로고    scopus 로고
    • Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases
    • Clarridge, J. E., III. 2004. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin. Microbiol. Rev. 17:840-862.
    • (2004) Clin. Microbiol. Rev. , vol.17 , pp. 840-862
    • Clarridge III, J.E.1
  • 6
    • 0036162066 scopus 로고    scopus 로고
    • Identification of Mycobacterium spp. by using a commercial 16S ribosomal DNA sequencing kit and additional sequencing libraries
    • Cloud, J. L., H. Neal, R. Rosenberry, C. Y. Turenne, M. Jama, D. R. Hillyard, and K. C. Carroll. 2002. Identification of Mycobacterium spp. by using a commercial 16S ribosomal DNA sequencing kit and additional sequencing libraries. J. Clin. Microbiol. 40:400-406.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 400-406
    • Cloud, J.L.1    Neal, H.2    Rosenberry, R.3    Turenne, C.Y.4    Jama, M.5    Hillyard, D.R.6    Carroll, K.C.7
  • 7
    • 1242314290 scopus 로고    scopus 로고
    • Evaluation of partial 16S ribosomal DNA sequencing for identification of Nocardia species by using the MicroSeq 500 system with an expanded database
    • Cloud, J. L., P. S. Conville, A. Croft, D. Harmsen, F. G. Witebsky, and K. C. Carroll. 2004. Evaluation of partial 16S ribosomal DNA sequencing for identification of Nocardia species by using the MicroSeq 500 system with an expanded database. J. Clin. Microbiol. 42:578-584.
    • (2004) J. Clin. Microbiol. , vol.42 , pp. 578-584
    • Cloud, J.L.1    Conville, P.S.2    Croft, A.3    Harmsen, D.4    Witebsky, F.G.5    Carroll, K.C.6
  • 8
    • 0033989512 scopus 로고    scopus 로고
    • Identification of Nocardia species by restriction endonuclease analysis of an amplified portion of the 16S rRNA gene
    • Conville, P. S., S. H. Fischer, C. P. Cartwright, and F. G. Witebsky. 2000. Identification of Nocardia species by restriction endonuclease analysis of an amplified portion of the 16S rRNA gene. J. Clin. Microbiol. 38:158-164.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 158-164
    • Conville, P.S.1    Fischer, S.H.2    Cartwright, C.P.3    Witebsky, F.G.4
  • 10
    • 0030464460 scopus 로고    scopus 로고
    • SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny
    • Galtier, N., M. Gouy, and C. Gautier. 1996. SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12:543-548.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 11
    • 0028205668 scopus 로고
    • Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments
    • Goebel, B. M., and E. Stackebrandt. 1994. Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments. Appl. Environ. Microbiol. 60:1614-1621.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1614-1621
    • Goebel, B.M.1    Stackebrandt, E.2
  • 12
    • 0020697879 scopus 로고
    • Ecology of actinomycetes
    • Goodfellow, M. 1983. Ecology of actinomycetes. Annu. Rev. Microbiol. 37:189-216.
    • (1983) Annu. Rev. Microbiol. , vol.37 , pp. 189-216
    • Goodfellow, M.1
  • 13
    • 0035009631 scopus 로고    scopus 로고
    • Differentiation of mycobacterial species by PCR-restriction analysis of DNA (342 base pairs) of the RNA polymerase gene (rpoB)
    • Kim, B. J., K. H. Lee, B. N. Park, S. J. Kim, G. H. Bai, S. J. Kim, and Y. H. Kook. 2001. Differentiation of mycobacterial species by PCR-restriction analysis of DNA (342 base pairs) of the RNA polymerase gene (rpoB). J. Clin. Microbiol. 39:2102-2109.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 2102-2109
    • Kim, B.J.1    Lee, K.H.2    Park, B.N.3    Kim, S.J.4    Bai, G.H.5    Kim, S.J.6    Kook, Y.H.7
  • 14
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 15
    • 0032921187 scopus 로고    scopus 로고
    • Rapid identification of clinically relevant Nocardia species to genus level by 16S rRNA gene PCR
    • Laurent, F., F. Provost, and P. Boiron. 1999. Rapid identification of clinically relevant Nocardia species to genus level by 16S rRNA gene PCR. J. Clin. Microbiol. 37:99-102.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 99-102
    • Laurent, F.1    Provost, F.2    Boiron, P.3
  • 16
    • 0034451650 scopus 로고    scopus 로고
    • The Nocardia salmonicida clade, including descriptions of Nocardia cummidelens sp. nov., Nocardia fluminea sp. nov. and Nocardia soli sp. nov.
    • Maldonado, L., J. V. Hookey, A. C. Ward, and M. Goodfellow. 2000. The Nocardia salmonicida clade, including descriptions of Nocardia cummidelens sp. nov., Nocardia fluminea sp. nov. and Nocardia soli sp. nov. Antonie Leeuwenhoek. 78:367-377.
    • (2000) Antonie Leeuwenhoek. , vol.78 , pp. 367-377
    • Maldonado, L.1    Hookey, J.V.2    Ward, A.C.3    Goodfellow, M.4
  • 17
    • 0030915099 scopus 로고    scopus 로고
    • Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification
    • McNabb, A., R. Shuttleworth, R. Behme, and W. D. Colby. 1997. Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification. J. Clin. Microbiol. 35:1361-1368.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 1361-1368
    • McNabb, A.1    Shuttleworth, R.2    Behme, R.3    Colby, W.D.4
  • 18
    • 0028200605 scopus 로고
    • The medically important aerobic actinomycetes: Epidemiology and microbiology
    • McNeil, M. M., and J. M. Brown. 1994. The medically important aerobic actinomycetes: epidemiology and microbiology. Clin. Microbiol. Rev. 7:357-417.
    • (1994) Clin. Microbiol. Rev. , vol.7 , pp. 357-417
    • McNeil, M.M.1    Brown, J.M.2
  • 20
    • 0001636103 scopus 로고
    • Note sur la maladie des boeufs de la guadeloupe connue sous le nom de farcin
    • Nocard, M. E. 1888. Note sur la maladie des boeufs de la guadeloupe connue sous le nom de farcin. Ann. Inst. Pasteur. 2:293-302.
    • (1888) Ann. Inst. Pasteur. , vol.2 , pp. 293-302
    • Nocard, M.E.1
  • 24
    • 0031974203 scopus 로고    scopus 로고
    • Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences
    • Roth, A., M. Fischer, M. E. Hamid, S. Michalke, W. Ludwig, and H. Manch. 1998. Differentiation of phylogenetically related slowly growing mycobacteria based on 16S-23S rRNA gene internal transcribed spacer sequences. J. Clin. Microbiol. 36:139-147.
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 139-147
    • Roth, A.1    Fischer, M.2    Hamid, M.E.3    Michalke, S.4    Ludwig, W.5    Manch, H.6
  • 25
    • 0037316861 scopus 로고    scopus 로고
    • Phytogeny of the genus Nocardia based on reassessed 16S rRNA gene sequences reveals underspeciation and division of strains classified as Nocardia astéroides into three established species and two unnamed taxons
    • Roth, A., S. Andrees, R. M. Kroppenstedt, D. Harmsen, and H. Mauch. 2003. Phytogeny of the genus Nocardia based on reassessed 16S rRNA gene sequences reveals underspeciation and division of strains classified as Nocardia astéroides into three established species and two unnamed taxons. J. Clin. Microbiol. 41:851-856.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 851-856
    • Roth, A.1    Andrees, S.2    Kroppenstedt, R.M.3    Harmsen, D.4    Mauch, H.5
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 0028839380 scopus 로고
    • DNA amplification restriction endonuclease analysis for differentiation of 12 species and taxa of Nocardia, including recognition of four new taxa within the Nocardia asteroides complex
    • Steingrube, V. A., B. A. Brown, J. L. Gibson, R. W. Wilson, J. Brown, Z. Blacklock, K. Jost, S. Locke, R. F. Ulrich, and R. J. Wallace, Jr. 1995. DNA amplification restriction endonuclease analysis for differentiation of 12 species and taxa of Nocardia, including recognition of four new taxa within the Nocardia asteroides complex. J. Clin. Microbiol. 33:3096-3101.
    • (1995) J. Clin. Microbiol. , vol.33 , pp. 3096-3101
    • Steingrube, V.A.1    Brown, B.A.2    Gibson, J.L.3    Wilson, R.W.4    Brown, J.5    Blacklock, Z.6    Jost, K.7    Locke, S.8    Ulrich, R.F.9    Wallace Jr., R.J.10
  • 29
    • 0030975490 scopus 로고    scopus 로고
    • Rapid identification of clinically significant species and taxa of aerobic actinomycetes, including Actinomadura, Gordona, Nocardia, Rhodococcus, Streptomyces, and Tsukamurella isolates, by DNA amplification and restriction endonuclease analysis
    • Steingrube, V. A., R. W. Wilson, B. A. Brown, K. Jost, J. L. Gibson, J. Brown, Z. Blacklock, J. L. Gibson, and R. J. Wallace, Jr. 1997. Rapid identification of clinically significant species and taxa of aerobic actinomycetes, including Actinomadura, Gordona, Nocardia, Rhodococcus, Streptomyces, and Tsukamurella isolates, by DNA amplification and restriction endonuclease analysis. J. Clin. Microbiol. 35:817-822.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 817-822
    • Steingrube, V.A.1    Wilson, R.W.2    Brown, B.A.3    Jost, K.4    Gibson, J.L.5    Brown, J.6    Blacklock, Z.7    Gibson, J.L.8    Wallace Jr., R.J.9
  • 30
    • 0027514742 scopus 로고
    • Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis
    • Telenti, A., F. Marchesl, M. Balz, F. Bally, E. C. Bottger, and T. Bodmer. 1993. Rapid identification of mycobacteria to the species level by polymerase chain reaction and restriction enzyme analysis. J. Clin. Microbiol. 31:175-178.
    • (1993) J. Clin. Microbiol. , vol.31 , pp. 175-178
    • Telenti, A.1    Marchesl, F.2    Balz, M.3    Bally, F.4    Bottger, E.C.5    Bodmer, T.6
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-1680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-11680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 32
    • 0034798093 scopus 로고    scopus 로고
    • Necessity of quality-controlled 16S rRNA gene sequence databases: Identifying non-tuberculous Mycobacterium species
    • Turenne, C. Y., L. Tschetter, J. Wolfe, and A. Kabani. 2001. Necessity of quality-controlled 16S rRNA gene sequence databases: identifying non-tuberculous Mycobacterium species. J. Clin. Microbiol. 39:1-12.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 1-12
    • Turenne, C.Y.1    Tschetter, L.2    Wolfe, J.3    Kabani, A.4
  • 35
    • 0028130261 scopus 로고
    • The superoxide dismutase gene, a target for detection and identification of mycobacteria by PCR
    • Zolg, J. W., and S. Philippi-Schulz. 1994. The superoxide dismutase gene, a target for detection and identification of mycobacteria by PCR. J. Clin. Microbiol. 32:2801-2812.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 2801-2812
    • Zolg, J.W.1    Philippi-Schulz, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.