A search algorithm for fixed-composition protein design

Journal of Computational Chemistry

Volumn 27, Issue 3, 2006, Pages 375-378

  Hom, Geoffrey K ^a   Mayo, Stephen L ^b  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

FASTER; Fixed composition; Monte Carlo; Protein design; Protein G

Indexed keywords

FASTER; FIXED COMPOSITION; PROTEIN DESIGN; PROTEIN G;

ALGORITHMS; AMINO ACIDS; COMPOSITION; MONTE CARLO METHODS;

PROTEINS;

AMINO ACID; PROTEIN;

ALGORITHM; ARTICLE; CHEMISTRY;

ALGORITHMS; AMINO ACIDS; PROTEINS;

EID: 32344433456     PISSN: 01928651     EISSN: 1096987X     Source Type: Journal    
DOI: 10.1002/jcc.20346     Document Type: Article

References (17)

1. Gordon, D. B.; Marshall, S. A.; Mayo, S. L. Curr Opin Struct Biol 1999, 9, 509.
2. Dill, K. A.; Shortle, D. Annu Rev Biochem 1991, 60, 795.
3. Shakhnovich, E. I.; Gutin, A. M. Protein Eng 1993, 6, 793.
4. Shakhnovich, E. I.; Gutin, A. M. Proc Natl Acad Sci 1993, 90, 7195.
5. Derrida, B. Phys Rev B 1981, 24, 2613.
6. Gutin, A. M.; Shakhnovich, E. I. J Chem Phys 1993, 98, 8174.
7. Koehl, P.; Levitt, M. J Mol Biol 1999, 293, 1161.
8. Voigt, C. A.; Gordon, D. B.; Mayo, S. L. J Mol Biol 2000, 299, 789.
9. Desmet, J.; Spriet, J.; Lasters, I. Proteins 2002, 48, 31.
10. Gordon, D. B.; Hom, G. K.; Mayo, S. L.; Pierce, N. A. J Comput Chem 2003, 24, 232.
11. Dahiyat, B. I.; Mayo, S. L. Science 1997, 278, 82.
12. Dahiyat, B. I.; Mayo, S. L. Protein Sci 1996, 5, 895.
13. Street, A. G.; Mayo, S. L. Struct Fold Des 1999, 7, R105.
14. Street, A. G.; Mayo, S. L. Fold Des 1998, 3, 253.
15. Lazaridis, T.; Karplus, M. Proteins 1999, 35, 133.
16. Gallagher, T.; Alexander, P.; Bryan, P.; Gilliland, G. L. Biochemistry 1994, 33, 4721.
17. Dunbrack, R. L., Jr.; Cohen, F. E. Protein Sci 1997, 6, 1661.