-
1
-
-
0026657433
-
Refined 1.8 angstrom crystal structure of the lambda repressor operator complex
-
Beamer LJ, Pabo CJ. 1992. Refined 1.8 angstrom crystal structure of the lambda repressor operator complex. J Mol Biol 227:177-196.
-
(1992)
J Mol Biol
, vol.227
, pp. 177-196
-
-
Beamer, L.J.1
Pabo, C.J.2
-
2
-
-
0017411710
-
The Protein Data Bank: A computer-based archival file for macromolecular structures
-
Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M. 1977. The Protein Data Bank: A computer-based archival file for macromolecular structures. J Mol Biol 112:535-542.
-
(1977)
J Mol Biol
, vol.112
, pp. 535-542
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.B.3
Meyer Jr., E.F.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
3
-
-
0025830469
-
A method to identify protein sequences that fold into a known three-dimensional structure
-
Bowie JU, Luthy R, Eisenberg D. 1991. A method to identify protein sequences that fold into a known three-dimensional structure. Science 253:164-170.
-
(1991)
Science
, vol.253
, pp. 164-170
-
-
Bowie, J.U.1
Luthy, R.2
Eisenberg, D.3
-
5
-
-
0028961901
-
Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase
-
Chan MK, Mukund S, Kletzin A, Adams MWW, Rees DC. 1995. Structure of a hyperthermophilic tungstopterin enzyme, aldehyde ferredoxin oxidoreductase. Science 267:1463-1469.
-
(1995)
Science
, vol.267
, pp. 1463-1469
-
-
Chan, M.K.1
Mukund, S.2
Kletzin, A.3
Adams, M.W.W.4
Rees, D.C.5
-
6
-
-
0025272940
-
α-Helical coiled coils and bundles: How to design an α-helical protein
-
Cohen C, Parry DAD. 1990. α-Helical coiled coils and bundles: How to design an α-helical protein. Proteins Struct Funct Genet 7:1-15.
-
(1990)
Proteins Struct Funct Genet
, vol.7
, pp. 1-15
-
-
Cohen, C.1
Parry, D.A.D.2
-
7
-
-
0021107965
-
Solvent accessible surfaces of proteins and nucleic acids
-
Connolly ML. 1983. Solvent accessible surfaces of proteins and nucleic acids. Science 221: 709-713.
-
(1983)
Science
, vol.221
, pp. 709-713
-
-
Connolly, M.L.1
-
9
-
-
0028858499
-
De novo design of the hydrophobic cores of proteins
-
Desjarlais JR, Handel TM. 1995. De novo design of the hydrophobic cores of proteins. Protein Sci 4:2006-2018.
-
(1995)
Protein Sci
, vol.4
, pp. 2006-2018
-
-
Desjarlais, J.R.1
Handel, T.M.2
-
10
-
-
0026589733
-
The dead-end elimination theorem and its use in protein side-chain positioning
-
Desmet J, De Maeyer M, Hazes B, Lasters I. 1992. The dead-end elimination theorem and its use in protein side-chain positioning. Nature 356:539-542.
-
(1992)
Nature
, vol.356
, pp. 539-542
-
-
Desmet, J.1
De Maeyer, M.2
Hazes, B.3
Lasters, I.4
-
11
-
-
0002114152
-
The dead-end elimination theorem: A new approach to the side-chain packing problem
-
Merz K Jr, Le Grand S, eds. Boston: Birkhauser
-
Desmet J, De Maeyer M, Lasters I 1994. The dead-end elimination theorem: A new approach to the side-chain packing problem. In: Merz K Jr, Le Grand S, eds. The protein folding problem and tertiary structure prediction. Boston: Birkhauser. pp 307-337.
-
(1994)
The Protein Folding Problem and Tertiary Structure Prediction
, pp. 307-337
-
-
Desmet, J.1
De Maeyer, M.2
Lasters, I.3
-
12
-
-
0025370815
-
Dominant forces in protein folding
-
Dill KA. 1990. Dominant forces in protein folding. Biochemistry 29:7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
13
-
-
0022596727
-
Solvation energy in protein folding and binding
-
Eisenberg D, McLachlan AD. 1986. Solvation energy in protein folding and binding. Nature 319:199-203.
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
14
-
-
49149147973
-
Iterative partial equalization of orbital electronegativity - A rapid access to atomic charges
-
Gasteiger J, Marsili M. 1980. Iterative partial equalization of orbital electronegativity - A rapid access to atomic charges. Tetrahedron 36:3219-3288.
-
(1980)
Tetrahedron
, vol.36
, pp. 3219-3288
-
-
Gasteiger, J.1
Marsili, M.2
-
15
-
-
0028212927
-
Efficient rotamer elimination applied to protein side-chains and related spin-glasses
-
Goldstein RF. 1994. Efficient rotamer elimination applied to protein side-chains and related spin-glasses. Biophys J 66:1335-1340.
-
(1994)
Biophys J
, vol.66
, pp. 1335-1340
-
-
Goldstein, R.F.1
-
16
-
-
0026317334
-
Periodicity of amide proton exchange rates in a coiled-coil leucine zipper peptide
-
Goodman EM, Kim PS. 1991. Periodicity of amide proton exchange rates in a coiled-coil leucine zipper peptide. Biochemistry 30:11615-11620.
-
(1991)
Biochemistry
, vol.30
, pp. 11615-11620
-
-
Goodman, E.M.1
Kim, P.S.2
-
17
-
-
0027177971
-
Metal ion-dependent modulation of the dynamics of a designed protein
-
Handel TM, Williams SA, DeGrado WF. 1993. Metal ion-dependent modulation of the dynamics of a designed protein. Science 261:879-885.
-
(1993)
Science
, vol.261
, pp. 879-885
-
-
Handel, T.M.1
Williams, S.A.2
DeGrado, W.F.3
-
18
-
-
0027756896
-
A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants
-
Harbury PB, Zhang T, Kim PS, Alber T. 1993. A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants. Science 252:1401-1407.
-
(1993)
Science
, vol.252
, pp. 1401-1407
-
-
Harbury, P.B.1
Zhang, T.2
Kim, P.S.3
Alber, T.4
-
19
-
-
0025040232
-
De novo design, expression and characterization of Felix - A four helix bundle protein of native like sequence
-
Hecht MH, Richardson JS, Richardson DC, Ogden RC. 1990. De novo design, expression and characterization of Felix - A four helix bundle protein of native like sequence. Science 249:884-891.
-
(1990)
Science
, vol.249
, pp. 884-891
-
-
Hecht, M.H.1
Richardson, J.S.2
Richardson, D.C.3
Ogden, R.C.4
-
20
-
-
0028237287
-
Optimal sequence selection in proteins of known structure by simulated evolution
-
Hellinga HW, Richards FM. 1994. Optimal sequence selection in proteins of known structure by simulated evolution. Proc Natl Acad Sci USA 91:5803-5807.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 5803-5807
-
-
Hellinga, H.W.1
Richards, F.M.2
-
21
-
-
0022203006
-
Computer assisted drug design
-
Hopfinger AJ. 1985. Computer assisted drug design. J Med Chem 28:1133-1139.
-
(1985)
J Med Chem
, vol.28
, pp. 1133-1139
-
-
Hopfinger, A.J.1
-
22
-
-
0026532266
-
Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme
-
Hurley JH, Baase WA, Matthews BW. 1992. Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme. J Mol Biol 224:1143-1154.
-
(1992)
J Mol Biol
, vol.224
, pp. 1143-1154
-
-
Hurley, J.H.1
Baase, W.A.2
Matthews, B.W.3
-
23
-
-
0027359429
-
Effeet of a single aspartate on helix stability at different positions in a neutral alanine based peptide
-
Huyghues-Despointes BMP, Scholtz JM, Baldwin RL. 1993. Effeet of a single aspartate on helix stability at different positions in a neutral alanine based peptide. Protein Sci 2:1604-1611.
-
(1993)
Protein Sci
, vol.2
, pp. 1604-1611
-
-
Huyghues-Despointes, B.M.P.1
Scholtz, J.M.2
Baldwin, R.L.3
-
24
-
-
0028220365
-
De novo protein design using pairwise potentials and a genetic algorithm
-
Jones DT. 1994. De novo protein design using pairwise potentials and a genetic algorithm. Protein Sci 3:567-574.
-
(1994)
Protein Sci
, vol.3
, pp. 567-574
-
-
Jones, D.T.1
-
25
-
-
23444436172
-
Protein design by binary patterning of polar and nonpolar amino acids
-
Kamtekar S, Schiffer JM, Xiong H, Babik JM, Hecht MH. 1993. Protein design by binary patterning of polar and nonpolar amino acids. Science 262:1680-1685.
-
(1993)
Science
, vol.262
, pp. 1680-1685
-
-
Kamtekar, S.1
Schiffer, J.M.2
Xiong, H.3
Babik, J.M.4
Hecht, M.H.5
-
26
-
-
0028304155
-
Energy minimization method using automata network for sequence and side-chain conformation prediction from given side-bone geometry
-
Kono H, Doi J. 1994. Energy minimization method using automata network for sequence and side-chain conformation prediction from given side-bone geometry. Proteins Struct Funct Genet 19:244-255.
-
(1994)
Proteins Struct Funct Genet
, vol.19
, pp. 244-255
-
-
Kono, H.1
Doi, J.2
-
27
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B, Richards FM. 1971. The interpretation of protein structures: Estimation of static accessibility. J Mol Biol 55:379-400.
-
(1971)
J Mol Biol
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
28
-
-
0026210071
-
Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core
-
Lee C, Levitt M. 1991. Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core. Nature 352:448-451.
-
(1991)
Nature
, vol.352
, pp. 448-451
-
-
Lee, C.1
Levitt, M.2
-
29
-
-
0025908265
-
The role of internal packing interactions in determining the structure and stability of a protein
-
Lim WA, Sauer RT. 1991. The role of internal packing interactions in determining the structure and stability of a protein. J Mol Biol 219:359-376.
-
(1991)
J Mol Biol
, vol.219
, pp. 359-376
-
-
Lim, W.A.1
Sauer, R.T.2
-
30
-
-
9144240095
-
Dreiding - A generic force-field for molecular simulations
-
Mayo SL, Olafson BD, Goddard WA III. 1990. Dreiding - A generic force-field for molecular simulations. J Phys Chem 94:8897-8890.
-
(1990)
J Phys Chem
, vol.94
, pp. 8897-18890
-
-
Mayo, S.L.1
Olafson, B.D.2
Goddard III, W.A.3
-
31
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis N, Rosenbluth AW, Rosenbluth MN, Teller AH, Teller E. 1953. Equation of state calculations by fast computing machines. J Chem Phys 21:1087-1092.
-
(1953)
J Chem Phys
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
32
-
-
0025272236
-
Secondary structure of a leucine zipper determined by nuclear magnetic resonance spectroscopy
-
Oas TG, McIntosh LP, O'Shea EK, Dahlquist FW, Kim PS. 1990. Secondary structure of a leucine zipper determined by nuclear magnetic resonance spectroscopy. Biochemistry 29:2891-2894.
-
(1990)
Biochemistry
, vol.29
, pp. 2891-2894
-
-
Oas, T.G.1
McIntosh, L.P.2
O'Shea, E.K.3
Dahlquist, F.W.4
Kim, P.S.5
-
33
-
-
0026331267
-
X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil
-
O'Shea EK, Klemm JD, Kim PS, Alber T. 1991. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil. Science 254:539-544.
-
(1991)
Science
, vol.254
, pp. 539-544
-
-
O'Shea, E.K.1
Klemm, J.D.2
Kim, P.S.3
Alber, T.4
-
34
-
-
0021108287
-
Designing proteins and peptides
-
Pabo CO. 1983. Designing proteins and peptides. Nature 301:200.
-
(1983)
Nature
, vol.301
, pp. 200
-
-
Pabo, C.O.1
-
35
-
-
84986462300
-
MSEED: A program for the rapid analytical determination of accessible surface areas and their derivatives
-
Perrot G, Cheng B, Gibson KD, Vila J, Palmer KA, Nayeem A, Maigret B, Scheraga HA. 1992. MSEED: A program for the rapid analytical determination of accessible surface areas and their derivatives. J Comput Chem 13:1-11
-
(1992)
J Comput Chem
, vol.13
, pp. 1-11
-
-
Perrot, G.1
Cheng, B.2
Gibson, K.D.3
Vila, J.4
Palmer, K.A.5
Nayeem, A.6
Maigret, B.7
Scheraga, H.A.8
-
36
-
-
0027471542
-
A designed metal-binding protein with a novel fold
-
Pessi A, Bianchi E, Crameri A, Venturini S, Tramontano A, Sollazzo M. 1993. A designed metal-binding protein with a novel fold. Nature 362:367-369.
-
(1993)
Nature
, vol.362
, pp. 367-369
-
-
Pessi, A.1
Bianchi, E.2
Crameri, A.3
Venturini, S.4
Tramontano, A.5
Sollazzo, M.6
-
37
-
-
0028948325
-
Structure-based design of transcription factors
-
Pomerantz JL, Sharp PA, Pabo CO. 1995. Structure-based design of transcription factors. Science 267:93-96.
-
(1995)
Science
, vol.267
, pp. 93-96
-
-
Pomerantz, J.L.1
Sharp, P.A.2
Pabo, C.O.3
-
38
-
-
0023155210
-
Tertiary templates for proteins - Use of packing criteria in the enumeration of allowed sequences for different structural classes
-
Ponder JW, Richards FM. 1987. Tertiary templates for proteins - Use of packing criteria in the enumeration of allowed sequences for different structural classes. J Mol Biol 193:775-791.
-
(1987)
J Mol Biol
, vol.193
, pp. 775-791
-
-
Ponder, J.W.1
Richards, F.M.2
-
39
-
-
0028587717
-
Betadoublet - De novo design, synthesis and characterization of a beta-sandwich protein
-
Quinn TP, Tweedy NB, Williams RW, Richardson JS, Richardson DC. 1994. Betadoublet - De novo design, synthesis and characterization of a beta-sandwich protein. Proc Natl Acad Sci USA 91:8747-8751.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 8747-8751
-
-
Quinn, T.P.1
Tweedy, N.B.2
Williams, R.W.3
Richardson, J.S.4
Richardson, D.C.5
-
40
-
-
33748481964
-
Charge equilibration for molecular dynamics simulations
-
Rappe AK, Goddard WA III. 1991. Charge equilibration for molecular dynamics simulations. J Phys Chem 95:3358-3363.
-
(1991)
J Phys Chem
, vol.95
, pp. 3358-3363
-
-
Rappe, A.K.1
Goddard III, W.A.2
-
41
-
-
0023812695
-
Characterization of a helical protein designed from first principles
-
Regan L, DeGrado WF. 1988. Characterization of a helical protein designed from first principles. Science 241:976-978.
-
(1988)
Science
, vol.241
, pp. 976-978
-
-
Regan, L.1
DeGrado, W.F.2
-
42
-
-
0028467707
-
Application of genetic function approximation to quantitative structure-property relationships
-
Rogers D, Hopfinger AJ. 1994. Application of genetic function approximation to quantitative structure-property relationships. J Chem Inf Comput Sci 34:854-866.
-
(1994)
J Chem Inf Comput Sci
, vol.34
, pp. 854-866
-
-
Rogers, D.1
Hopfinger, A.J.2
-
43
-
-
0026669807
-
Prediction of the activity and stability effects of site-directed mutagenesis on a protein core
-
van Gunsteren WF, Mark AE. 1992. Prediction of the activity and stability effects of site-directed mutagenesis on a protein core. J Mol Biol 227: 389-395.
-
(1992)
J Mol Biol
, vol.227
, pp. 389-395
-
-
Gunsteren, W.F.1
Mark, A.E.2
-
44
-
-
0027080909
-
Atomic solvation parameters applied to molecular dynamics of proteins in solution
-
Wesson L, Eisenberg D. 1992. Atomic solvation parameters applied to molecular dynamics of proteins in solution. Protein Sci 1:227-235.
-
(1992)
Protein Sci
, vol.1
, pp. 227-235
-
-
Wesson, L.1
Eisenberg, D.2
|