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Bioinformatics
Volumn 22, Issue 2, 2006, Pages 242-244
COMPAM: Visualization of combining pairwise alignments for multiple genomes
Author keywords

[No Author keywords available]
Indexed keywords

DNA;
EID: 32144438292     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti759     Document Type: Article
Times cited : (6)
References (9)
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    • Carver,T.J. et al. (2005) ACT: The Artemis comparison tool. Bioinformatics, 21, 3422-3423.
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    • Carver, T.J.1
  • 2
    • 1842818733 scopus 로고    scopus 로고
    • Visualization of multiple genome annotations and alignments With the K-BROWSER
    • Chakrabarti,K. and Pachter,L. (2004) Visualization of multiple genome annotations and alignments With the K-BROWSER. Genome Res., 14, 716-720.
    • (2004) Genome Res. , vol.14 , pp. 716-720
    • Chakrabarti, K.1    Pachter, L.2
  • 3
    • 26444589766 scopus 로고    scopus 로고
    • Multiple genome alignment by clustering pairwise matches
    • Lagergren,J. (ed.), number 3388 in Lecture Note in Bioinformatics (LNB1), Bertinoro, Italy. Springer, Berlin
    • Choi,J.-H., Choi,K., Cho,H.-G. and Kim,S. Multiple genome alignment by clustering pairwise matches. In Lagergren,J. (ed.), Proceedings of the Comparative Genomics Satellite Workshop, number 3388 in Lecture Note in Bioinformatics (LNB1), Bertinoro, Italy. Springer, Berlin, pp. 30-41.
    • Proceedings of the Comparative Genomics Satellite Workshop , pp. 30-41
    • Choi, J.-H.1    Choi, K.2    Cho, H.-G.3    Kim, S.4
  • 4
    • 4444302046 scopus 로고    scopus 로고
    • GenAlyzer: Interactive visualization of sequence similarities between entire genomes
    • Choudhuri,J.V. et al. (2004) GenAlyzer: Interactive visualization of sequence similarities between entire genomes. Bioinformatics, 20, 1964-1965.
    • (2004) Bioinformatics , vol.20 , pp. 1964-1965
    • Choudhuri, J.V.1
  • 5
    • 3543051830 scopus 로고    scopus 로고
    • Mauve: Multiple alignment of conserved genomic sequence with rearrangements
    • Darling,A.C. et al. (2004) Mauve: Multiple alignment of conserved genomic sequence with rearrangements. Genome Res., 14, 1394-1403.
    • (2004) Genome Res. , vol.14 , pp. 1394-1403
    • Darling, A.C.1
  • 6
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    • GenomePixelizer - A visualization program for comparative genomics within and between species
    • Kozik,A. et al. (2002) GenomePixelizer - a visualization program for comparative genomics within and between species. Bioinformatics, 18, 335-336.
    • (2002) Bioinformatics , vol.18 , pp. 335-336
    • Kozik, A.1
  • 7
    • 13244278001 scopus 로고    scopus 로고
    • GATA: A graphic alignment tool for comparative sequence analysis
    • Nix,D.A. and Eisen,M.B. (2005) GATA: A graphic alignment tool for comparative sequence analysis. BMC Bioinformatics, 6, (http://www.biomedcentral.com/1471-2105/6/9).
    • (2005) BMC Bioinformatics , pp. 6
    • Nix, D.A.1    Eisen, M.B.2
  • 8
    • 13244252316 scopus 로고    scopus 로고
    • Visualization of comparative genomic analyses by BLAST score ratio
    • Rasko,D.A. (2005) Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics, 6, 1471-2105.
    • (2005) BMC Bioinformatics , vol.6 , pp. 1471-2105
    • Rasko, D.A.1
  • 9
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    • Phyto-VISTA: Interactive visualization of multiple DNA sequence alignments
    • Shah,N. et al. (2004) Phyto-VISTA: Interactive visualization of multiple DNA sequence alignments. Bioinformatics, 20, 636-643.
    • (2004) Bioinformatics , vol.20 , pp. 636-643
    • Shah, N.1

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