Characterization of D-ribose biosynthesis in Bacillus subtilis JY200 deficient in transketolase gene

Journal of Biotechnology

Volumn 121, Issue 4, 2006, Pages 508-516

  Park, Yong Cheol ^a,b   Choi, Jin Ho ^a   Bennett, George N ^b   Seo, Jin Ho ^a  

^a Seoul National University   (South Korea)

^b RICE UNIVERSITY   (United States)

Author keywords

Bacillus subtilis; D Ribose; Fed batch culture; Kinetics; Transketolase; Xylose

Indexed keywords

CELL CULTURE; ENZYMES; GENES; METABOLISM; REACTION KINETICS; XYLOSE;

BACILLUS SUBTILIS; D-RIBOSE; FED-BATCH CULTURE; KINETICS; TRANSKETOLASE;

BIOSYNTHESIS;

GLUCOSE; RIBOSE; TRANSKETOLASE; XYLOSE;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL CHROMOSOME; BACTERIAL GENE; BACTERIAL GENETICS; BACTERIUM CULTURE; CARBOHYDRATE SYNTHESIS; CELL VIABILITY; CULTURE MEDIUM; DEPLETION; ENERGY RESOURCE; FED BATCH CULTURE; FEEDING; GENE CASSETTE; GENE DISRUPTION; GENETIC ENGINEERING; KINETICS; NONHUMAN; PLASMID; PRIORITY JOURNAL; THIN LAYER CHROMATOGRAPHY; WILD TYPE;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; GENE DELETION; GENES, BACTERIAL; RIBOFLAVIN; RIBOSE; TRANSKETOLASE; XYLOSE;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 32044450321     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2005.08.003     Document Type: Article

References (30)

1. N.O. Ali, J. Bignon, G. Rapoport, and M. Debarbouille Regulation of the acetoin catabolic pathway is controlled by sigma L in Bacillus subtilis J. Bacteriol. 183 2001 2497 2504
2. P.W. Atkins Physical Chemistry 1998 Oxford University Press Great Clarendon Street, Oxford, UK
3. P. De Wulf, W. Soetaert, D. Schwengers, and E.J. Vandamme d-Glucose does not catabolite repress a transketolase-deficient d-ribose-producing Bacillus subtilis mutant strain J. Ind. Microbiol. 17 1996 104 109
4. P. De Wulf, and E.J. Vandamme Production of d-ribose Appl. Microbiol. Biotechnol. 48 1997 141 148
5. L. Eidels, and M.J. Osborn Lipopolysaccharide and aldoheptose biosynthesis in transketolase mutants of Salmonella typhimurium Proc. Natl. Acad. Sci. U.S.A. 68 1971 1673 1677
6. S.A. Hansen Thin-layer chromatographic method for the identification of mono-, di- and trisaccharides J. Chromatogr. 107 1975 224 226
7. A. Iida, S. Techiba, and K. Mizobuchi Idendification and characterization of the tktB gene encoding a second transketolase in Escherichia coli K-12 J. Bacteriol. 175 1993 5375 5383
8. M. Ikeda, K. Okamoto, and R. Katsumata A transketolase mutant of Corynebacterium glutamicum Appl. Microbiol. Biotechnol. 50 1998 375 378
9. B. Josephson, and D.G. Frankel Transketolase mutants of Escherichia coli J. Bacteriol. 100 1969 1289 1295
10. Kishimoto, K., Kiotaka, K., Uchiyama, N., 1990. Production of d-ribose. US Patent 4,904,587.
11. K.G. Krebs, D. Heusser, and H. Wimmer Spray reagents E. Stahl Thin-Layer Chromatography 1972 Springer-Verlag Berlin 854 925
12. F. Kunst, N. Ogasawara, I. Moszer, A.M. Albertini, and G. Alloni The complete genome sequence of the Gram-positive bacterium Bacillus subtilis Nature 390 1997 249 256
13. W.J. Lee, M.D. Kim, M.S. Yoo, Y.W. Ryu, and J.H. Seo Effects of xylose reductase activity on xylitol production in two-substrate fermentation of recombinant Saccharomyces cerevisiae J. Microbiol. Biotechnol. 13 2003 725 730
14. C. Lindner, J. Stülke, and M. Hecker Regulation of xylanolytic enzymes in Bacillus subtilis Microbiology 140 1994 753 757
15. Y.C. Park, and J.H. Seo Optimization of culture conditions for d-ribose production by transketolase deficient Bacillus subtilis J. Microbiol. Biotechnol. 14 2004 665 672
16. Y.C. Park, S.G. Kim, K.M. Park, K.H. Lee, and J.H. Seo Fed-batch production of d-ribose from sugar mixtures by transketolase deficient Bacillus subtilis SPK1 Appl. Microbiol. Biotechnol. 66 2004 297 302
17. E. Presecan-Siedel, A. Galinier, R. Longin, J. Deutscher, A. Danchin, P. Glaser, and I. Martin-Verstraete Catabolite regulation of the pta gene as part of carbon flow pathways in Bacillus subtilis J. Bacteriol. 181 1999 6889 6897
18. K. Sasajima, and M. Yoneda Microbial production of d-ribose E.J. Vandamme Biotechnology of Vitamins, Pigments and Growth Factors 1989 Elsevier England 167 197
19. K. Sasajima, and M. Yoneda Carbohydrate metabolism-mutants of a Bacillus species Part II. d-Ribose accumulation by pentose phosphate pathway mutant Agric. Biol. Chem. 35 1971 509 517
20. I. Schaaff-gerstenschläger, G. Mannhaupt, I. Vetter, and F.K. Zimmermann TKL2, a second transketolase gene of Saccharomyces cerevisiae. Cloning, sequence and deletion analysis of the gene Eur. J. Biochem. 217 1993 487 492
21. D. Schmiedel, M. Kintrup, E. Küster, and W. Hillen Regulation of expression, genetic organization and substrate specificity of xylose uptake in Bacillus megaterium Mol. Microbiol. 23 1997 1053 1062
22. M.L. Shuler, and F. Kargi Bioprocess Engineering Basic Concepts 2002 Prentice Hall Englewood Cliffs, New Jersey pp. 124-126
23. J. Stülke, and W. Hillen Regulation of carbon catabolism in Bacillus species Annu. Rev. Microbiol. 54 2000 849 880
24. M. Sumiya, E.O. Davis, L.C. Packman, T.P. McDonald, and P.J. Henderson Molecular genetics of a receptor protein for d-xylose, encoded by the gene xylF, in Escherichia coli Recept. Channels 3 1995 117 128
25. A.J. Turinsky, T.R. Moir-Blais, F.J. Grundy, and T.M. Henkin Bacillus subtilis ccpA gene mutants specifically defective in activation of acetoin biosynthesis J. Bacteriol. 182 2000 5611 5614
26. P. Weisser, R. Krämer, and G.A. Sprenger Expression of the Escherichia coli pmi gene, encoding phosphomannose-isomerase in Zymomonas mobilis, leads to utilization of mannose as a novel growth substrate, which can be used as a selective marker Appl. Environ. Microbiol. 62 1996 4155 4161
27. M.J. Yang, S.H. Jung, E.S. Shin, J.H. Kim, H.D. Yun, U.L. Wong, and H. Kim Expression of a Bacillus subtilis endoglucanase in protease-deficient Bacillus subtilis strains J. Microbiol. Biotechnol. 14 2004 430 434
28. R. Zarzeczny, J.J. Brault, K.A. Abraham, C.R. Hancock, and R.L. Terjung Influence of ribose on adenine salvage after intense muscle contractions J. Appl. Physiol. 91 2001 1775 1781
29. G. Zhao, and M.E. Winkler An Escherichia coli K-12 tktA tktB mutant deficient in transketolase activity requires pyridoxine (Vitamin B6) as well as the aromatic amino acids and vitamins for growth J. Bacteriol. 176 1994 6134 6138
30. H.G. Zimmer Normalization of depressed heart function in rats by ribose Science 220 1983 81 82