Transcriptional regulation of post-aggregation genes in Dictyostelium by a feed-forward loop involving GBF and LagC

Developmental Biology

Volumn 290, Issue 2, 2006, Pages 460-469

  Iranfar, Negin ^a   Fuller, Danny ^a   Loomis, William F ^a  

^a UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

Author keywords

Adhesion signaling; Dictyostelium development; DNA binding protein; Feed forward loop; Post aggregative genes; Transcriptional profiling

Indexed keywords

ADENYLATE CYCLASE; CYCLIC AMP; DNA BINDING PROTEIN; PROTEIN GBF; PROTEIN LAGC; PROTOZOAL PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CELL MUTANT; DEVELOPMENTAL GENETICS; DICTYOSTELIUM; GENE EXPRESSION; MICROARRAY ANALYSIS; NONHUMAN; POSITIVE FEEDBACK; PRIORITY JOURNAL; PROTEIN AGGREGATION; PROTEIN EXPRESSION; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; WILD TYPE;

DICTYOSTELIUM;

EID: 31544453604     PISSN: 00121606     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ydbio.2005.11.035     Document Type: Article

References (48)

1. A. Agarwal, M.S. Sloger, M. Oyama, and D.D. Blumberg Analysis of a novel cyclic AMP inducible prespore gene in Dictyostelium discoideum: evidence for different patterns of cAMP regulation Differentiation 57 1994 151 162
2. S. Alexander, S. Srinivasan, and H. Alexander Proteomics opens doors to the mechanisms of developmentally regulated secretion Mol. Cell. Proteomics 2 2003 1156 1163
3. C. Anjard, S. Pinaud, R.R. Kay, and C.D. Reymond Overexpression of Dd PK2 protein kinase causes rapid development and affects the intracellular cAMP pathway of Dictyostelium Dictyostelium Development 115 1992 785 790
4. J.M. Brown, and R.A. Firtel Functional and regulatory analysis of the Dictyostelium G-box binding factor Dev. Biol. 234 2001 521 534
5. A. Ceccarelli, H.J. Mahbubani, R. Insall, G. Schnitzler, R.A. Firtel, and J.G. Williams A G-rich sequence element common to Dictyostelium genes which differ radically in their patterns of expression Dev. Biol. 152 1992 188 193
6. S. Datta, and R.A. Firtel Identification of the sequences controlling cyclic AMP regulation and cell-type-specific expression of a prestalk-specific gene in Dictyostelium discoideum Mol. Cell. Biol. 7 1987 149 159
7. J.L. Dynes, A.M. Clark, G. Shaulsky, A. Kuspa, W.F. Loomis, and R.A. Firtel LagC is required for cell-cell interactions that are essential for cell-type differentiation in Dictyostelium Genes Dev. 8 1994 948 958
8. A.E. Early, J.G. Williams, H.E. Meyer, S.B. Por, E. Smith, K.L. Williams, and A.A. Gooley Structural characterization of Dictyostelium discoideum prespore-specific gene D19 and of its product, cell surface glycoprotein PsA Mol. Cell. Biol. 8 1988 3458 3466
9. P. Eichenberger, M. Fujita, S.T. Jensen, E.M. Conlon, D.Z. Rudner, S.T. Wang, C. Ferguson, K. Haga, T. Sato, J.S. Liu, and R. Losick The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis PLoS Biol. 2 2004 1664 1683
10. L. Eichinger, J. Pachebat, G. Glockner, M.-A. Rajandream, R. Sucgang, M. Berriman, J. Song, R. Olsen, K. Szafranski, Q. Xu, B. Tunggal, S. Kummerfeld, M. Madera, A. Konfortov, F. Rivero, A. Bankier, R. Lehmann, N. Hamlin, R. Davies, P. Gaudet, P. Fey, K. Pilcher, G. Chen, D. Saunders, E. Sodergen, P. Davis, A. Kehornou, X. Nie, N. Hall, C. Anjard, L. Hemphill, N. Bason, P. Farbrother, B. Desany, E. Just, T. Morio, R. Rost, C. Churcher, J. Cooper, S. Haydock, N. van Driessche, A. Cronin, I. Goodhead, D. Muzny, T. Mourier, A. Pain, M. Lu, D. Harper, R. Lindsay, H. Hauser, K. James, M. Quiles, M. Mohan, T. Saito, C. Buchrieser, A. Wardroper, M. Felder, M. Thangavelu, D. Johnson, A. Knights, H. Loulseged, K.M. Mungall, K. Oliver, C. Price, M. Quail, H. Urushihara, J. Hernadez, E. Rabbinowitsch, D. Steffen, M. Sanders, J. Ma, Y. Kohara, S. Sharp, M. Simmonds, S. Spiegler, A. Tivey, S. Sugano, B. White, D. Walker, J. Woodward, T. Winckler, Y. Tanaka, G. Shaulsky, M. Schleicher, G. Weinstock, A. Rosenthal, E. Cox, R. Chisholm, R. Gibbs, W.F. Loomis, M. Platzer, R.R. Kay, J. Williams, P. Dear, A.A. Noegel, B. Barrell, and A. Kuspa The genome of the social amoeba Dictyostelium discoideum Nature 435 2005 43 57
11. R. Escalante, N. Iranfar, L. Sastre, and W.F. Loomis Identification of genes dependent on the MADS-box transcription factor SrFA in Dictyostelium development Euk. Cell 3 2004 564 566
12. R.A. Firtel Interacting signaling pathways controlling multicellular development in Dictyostelium Curr. Opin. Genet. Devel. 6 1996 545 554
13. K.L. Fosnaugh, and W.F. Loomis Coordinate regulation of the spore coat genes in Dictyostelium discoideum Dev. Genet. 12 1991 123 132
14. K.L. Fosnaugh, and W.F. Loomis Enhancer regions responsible for temporal and cell-type-specific expression of a spore coat gene in Dictyostelium Dev. Biol. 157 1993 38 48
15. J. Gerhart, and M. Kirschner Cells, Embryos, and Evolution 1997 Blackewell Science Malden, MA
16. G. Gerisch, and U. Wick Intracellular oscillations and release of cyclic AMP from Dictyostelium cells Biochem. Biophys. Res. Commun. 65 1975 364 370
17. A.J. Harwood, N.A. Hopper, M.N. Simon, S. Bouzid, M. Veron, and J.G. Williams Multiple roles for cAMP-dependent protein kinase during Dictyostelium development Dev. Biol. 149 1992 90 99
18. A.L. Hjorth, C. Pears, J.G. Williams, and R.A. Firtel A developmentally regulated trans-acting factor recognizes dissimilar G/C-rich elements controlling a class of cAMP-inducible Dictyostelium genes Genes Dev. 4 1990 419 432
19. N.A. Hopper, C. Anjard, C.D. Reymond, and J.G. Williams Induction of terminal differentiation of Dictyostelium by cAMP-dependent protein kinase and opposing effects of intracellular and extracellular cAMP on stalk cell differentiation Development 119 1993 147 154
20. N.A. Hopper, A.J. Harwood, S. Bouzid, M. Veron, and J.G. Williams Activation of the prespore and spore cell pathway of Dictyostelium differentiation by cAMP-dependent protein kinase and evidence for its upstream regulation by ammonia EMBO J. 12 1993 2459 2466
21. N.A. Hopper, G.M. Sanders, K.L. Fosnaugh, J.G. Williams, and W.F. Loomis Protein kinase A is a positive regulator of spore coat gene transcription in Dictyostelium Differentiation 58 1995 183 188
22. R.O. Hynes Integrins:bidirectional allosteric signaling machines Cell 110 2002 673 687
23. N. Iranfar, D. Fuller, R. Sasik, T. Hwa, M. Laub, and W.F. Loomis Expression patterns of cell-type-specific genes in Dictyostelium Mol. Biol. Cell 12 2001 2590 2600
24. N. Iranfar, D. Fuller, and W.F. Loomis Genome-wide expression analyses of gene regulation during early development of Dictyostelium discoideum Euk. Cell 2 2003 664 670
25. T. Kaplan, N. Friedman, and H. Margalit Ab initio prediction of transcription factor targets using structural knowledge PLos Computational Bio. 1 2005 5 13
26. A.R. Kimmel, and R.A. Firtel Breaking symmetries: regulation of Dictyostelium development through chemoattractant and morphogen signal-response Curr. Opin. Genet. Devel. 14 2004 540 549
27. D.A. Knecht, S.M. Cohen, W.F. Loomis, and H.F. Lodish Developmental regulation of Dictyostelium Dictyostelium actin gene fusions carried on low-copy and high-copy transformation vectors Mol. Cell. Biol. 6 1986 3973 3983
28. A. Kuspa, and W.F. Loomis Tagging developmental genes in Dictyostelium by restriction enzyme-mediated integration of plasmid DNA Proc. Natl. Acad. Sci. U. S. A. 89 1992 8803 8807
29. W.F. Loomis Role of PKA in the timing of developmental events in Dictyostelium cells Microbiol. Mol. Biol. Rev. 62 1998 684
30. W.F. Loomis, S. White, and R.L. Dimond A sequence of dependent stages in the development of Dictyostelium discoideum Dev. Biol. 53 1976 171 177
31. M. Maeda, H. Sakamoto, N. Iranfar, D.T. Fuller, S. Ogihara, T. Morio, H. Urushihara, Y. Tanaka, and W.F. Loomis Changing patterns of gene expression in Dictyostelium prestalk cell subtypes recognized by in situ hybridization with genes from microarray analyses Euk. Cell 2 2003 627 637
32. S. Mangan, A. Zaslaver, and U. Alon The coherent feedforward loop serves as a sign-sensitive delay element in transcription networks J. Mol. biol. 334 2003 197 204
33. S.K.O. Mann, W.M. Yonemoto, S.S. Taylor, and R.A. Firtel DdPK3, which plays essential roles during Dictyostelium development, encodes the catalytic subunit of cAMP-dependent protein kinase Proc. Natl. Acad. Sci. U. S. A. 89 1992 10701 10705
34. S.K.O. Mann, J.M. Brown, C. Briscoe, C. Parent, G. Pitt, P.N. Devreotes, and R.A. Firtel Role of cAMP-dependent protein kinase in controlling aggregation and postaggregative development in Dictyostelium Dev. Biol. 183 1997 208 221
35. T. Maruo, H. Sakamoto, N. Iranfar, D. Fuller, T. Morio, H. Urushihara, Y. Tanaka, M. Maeda, and W.F. Loomis Control of cell type proportioning in Dictyostelium discoideum by differentiation-inducing factor as determined by in situ hybridization Euk. Cell 3 2004 1241 1248
36. M. Mendoza, F. Du, N. Iranfar, N. Tang, H. Ma, W.F. Loomis, and R.A. Firtel Loss of SMEK, a novel, conserved protein, suppresses mek1 null cell polarity and chemotaxis defects Mol. Cell. Biol. 25 2005 7839 7853
37. R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, and U. Alon Network motifs: simple building blocks of complex networks Science 298 2002 824 827
38. C.A. Parent, and P.N. Devreotes Molecular genetics of signal transduction in Dictyostelium Annu. Rev. Biochem. 65 1996 411 440
39. C.J. Pears, and J.G. Williams Identification of a DNA sequence element required for efficient expression of a developmentally regulated and cAMP-inducible gene of Dictyostelium discoideum EMBO J. 6 1987 195 200
40. C.J. Pears, and J.G. Williams Multiple copies of a G-rich element upstream of a cAMP-inducible Dictyostelium gene are necessary but not sufficient for efficient gene expression Nucleic Acids Res. 16 1988 8467 8486
41. G.R. Schnitzler, W.H. Fischer, and R.A. Firtel Cloning and characterization of the G-box binding factor, an essential component of the developmental switch between early and late development in Dictyostelium Genes Dev. 8 1994 502 514
42. G.R. Schnitzler, C. Briscoe, J.M. Brown, and R.A. Firtel Serpentine cAMP receptors may act through a G protein-independent pathway to induce postaggregative development in Dictyostelium Cell 81 1995 737 745
43. M.N. Simon, O. Pelegrini, M. Veron, and R.R. Kay Mutation of protein kinase A causes heterochronic development of Dictyostelium Nature 356 1992 171 172
44. S. Sukumaran, J.M. Brown, R.A. Firtel, and J.G. McNally lagC-null and gbf-null cells define key steps in the morphogenesis of Dictyostelium mounds Dev. Biol. 200 1998 16 26
45. M. Sussman Cultivation and synchronous morphogenesis of Dictyostelium under controlled experimental conditions J.A. Spudich Methods in Cell Biology vol. 28 1987 Ac. Press Orlando, FL 9 29
46. N. Van Driessche, C. Shaw, M. Katoh, T. Morio, R. Sucgang, M. Ibarra, H. Kuwayama, T. Saito, H. Urushihara, M. Maeda, I. Takeuchi, H. Ochiai, W. Eaton, J. Tollett, J. Halter, A. Kuspa, Y. Tanaka, and G. Shaulsky A transcriptional profile of multicellular development in Dictyostelium discoideum Development 129 2002 1543 1552
47. J. Wang, L. Huo, D. Awrey, W.F. Loomis, R.A. Firtel, and C.-H. Siu Membrane glycoprotein gp150 is encoded by the lagC gene and mediates cell-cell adhesion via heterophilic binding during Dictyostelium development Dev. Biol. 227 2000 734 745
48. T. Winckler, N. Iranfar, P. Beck, I. Jennes, O. Siol, U. Baik, W.F. Loomis, and T. Dingermann CbfA, the C-module DNA-binding factor, plays an essential role in the initiation of Dictyostelium discoideum development Euk. Cell 3 2004 1349 1358