Proteomic screening and identification of differentially distributed membrane proteins in Escherichia coli

Molecular Microbiology

Volumn 52, Issue 4, 2004, Pages 1029-1044

  Lai, Erh Min ^a,b   Nair, Usha ^a   Phadke, Nikhil D ^a   Maddock, Janine R ^a  

^a UNIVERSITY OF MICHIGAN   (United States)

^b INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

MEMBRANE ASSOCIATED PROTEIN FTSZ; MEMBRANE PROTEIN; MONOCYTE CHEMOTACTIC PROTEIN; PROTEIN ACRA; PROTEIN ATPA; PROTEIN ATPB; PROTEIN BTUB; PROTEIN FADL; PROTEIN OMPT; PROTEIN OMPW; PROTEIN PAI; PROTEIN TSX; PROTEIN YBHC; PROTEIN YIAF; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL CELL; BACTERIAL MEMBRANE; ESCHERICHIA COLI; IMMUNOHISTOCHEMISTRY; MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN LOCALIZATION; PROTEOMICS; TWO DIMENSIONAL ELECTROPHORESIS;

BACTERIAL OUTER MEMBRANE PROTEINS; CHEMORECEPTORS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; FATTY ACID TRANSPORT PROTEINS; FIMBRIAE PROTEINS; LIPOPROTEINS; MASS SPECTROMETRY; MEMBRANE PROTEINS; MEMBRANE TRANSPORT PROTEINS; MICROSCOPY, FLUORESCENCE; PEPTIDE HYDROLASES; PEPTIDOGLYCAN; PORINS; PROTEOME; RECEPTORS, PEPTIDE; RECEPTORS, VIRUS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA;

EID: 3142781659     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2004.04040.x     Document Type: Article

References (55)

1. Adler, H.I., Fisher, W.D., Cohen, A., and Hardigree, A.A. (1967) Miniature Escherichia coli cells deficient in DNA. Proc Natl Acad Sci USA 60: 321-326.
2. Alley, M.R., Maddock, J.R., and Shapiro, L. (1992) Polar localization of a bacterial chemoreceptor. Genes Dev 6: 825-836.
3. Altendorf, K., Stalz, W., Greie, J., and Deckers-Hebestreit, G. (2000) Structure and function of the F(o) complex of the ATP synthase from Escherichia coli. J Exp Biol 203 Part 1: 19-28.
4. Bahloul, A., Meury, J., Kern, R., Garwood, J., Guha, S., and Kohiyama, M. (1996) Co-ordination between membrane oriC sequestration factors and a chromosome partitioning protein, TolC (MukA). Mol Microbiol 22: 275-282.
5. Bernadac, A., Gavioli, M., Lazzaroni, J.C., Raina, S., and Lloubes, R. (1998) Escherichia coli tol-pal mutants form outer membrane vesicles. J Bacteriol 180: 4872-4878.
6. Bi, E.F., and Lutkenhaus, J. (1991) FtsZ ring structure associated with division in Escherichia coli. Nature 14: 161-164.
7. Bi, E., and Lutkenhaus, J. (1993) Cell division inhibitors SulA and MinCD prevent formation of the FtsZ ring. J Bacteriol 175: 1118-1125.
8. Bi, E., Dai, K., Subbarao, S., Beall, B., and Lutkenhaus, J. (1991) FtsZ and cell division. Res Microbiol 142: 249-252.
9. Bouvier, J., Pugsley, A.P., and Stragier, P. (1991) A gene for a new lipoprotein in the dapA-purC interval of the Escherichia coli chromosome. J Bacteriol 173: 5523-5531.
10. Bremer, E., Middendorf, A., Martinussen, J., and Valentin-Hansen, P. (1990) Analysis of the tsx gene, which encodes a nucleoside-specific channel-forming protein (Tsx) in the outer membrane of Escherichia coli. Gene 96: 59-65.
11. Cantwell, B.J., Draheim, R.R., Weart, R.B., Nguyen, C., Stewart, R.C., and Manson, M.D. (2003) CheZ phosphatase localizes to chemoreceptor patches via CheA-short. J Bacteriol 185: 2354-2361.
12. Cascales, E., Bernadac, A., Gavioli, M., Lazzaroni, J.C., and Lloubes, R. (2002) Pal lipoprotein of Escherichia coli plays a major role in outer membrane integrity. J Bacteriol 184: 754-759.
13. Cornelis, G.R. (2002) The Yersinia Ysc-Yop virulence apparatus. Int J Med Microbiol 291: 455-462.
14. Delgado, M.A., Solbiati, J.O., Chiuchiolo, M.J., Farias, R.N., and Salomon, R.A. (1999) Escherichia coli outer membrane protein TolC is involved in production of the peptide antibiotic microcin J25. J Bacteriol 181: 1968-1970.
15. Draper, G.C., and Gober, J.W. (2002) Bacterial chromosome segregation. Annu Rev Microbiol 56: 567-597.
16. Dvorak, H.F., Wetzel, B.K., and Heppel, L.A. (1970) Biochemical and cytochemical evidence for the polar concentration of periplasmic enzymes in a 'minicell' strain of Escherichia coli. J Bacteriol 104: 543-548.
17. Errington, J., Daniel, R.A., and Scheffers, D.J. (2003) Cytokinesis in bacteria. Microbiol Mol Biol Rev 67: 52-65.
18. Fath, M.J., Zhang, L.H., Rush, J., and Kolter, R. (1994) Purification and characterization of colicin V from Escherichia coli culture supernatants. Biochemistry 33: 6911-6917.
19. Fountoulakis, M., and Gasser, R. (2003) Proteomic analysis of the cell envelope fraction of Escherichia coli. Amino Acids 24: 19-41.
20. Gestwicki, J.E., Lamanna, A.C., Harshey, R.M., McCarter, L.L., Kiessling, L.L., and Adler, J. (2000) Evolutionary conservation of methyl-accepting chemotaxis protein location in bacteria and Archaea. J Bacteriol 182: 6499-6502.
21. Goodell, E.W., and Schwarz, U. (1977) Enzymes synthesizing and hydrolyzing murein in Escherichia coli. Topographical distribution over the cell envelope. Eur J Biochem 81: 205-210.
22. Green, E.W., and Schaechter, M. (1972) The mode of segregation of the bacterial cell membrane. Proc Natl Acad Sci USA 69: 2312-2316.
23. Gudmundsdottir, A., Bradbeer, C., and Kadner, R.J. (1988) Altered binding and transport of vitamin B12 resulting from insertion mutations in the Escherichia coli btuB gene. J Biol Chem 263: 14224-14230.
24. Harrison, D.M., Skidmore, J., Armitage, J.P., and Maddock, J.R. (1999) Localization and environmental regulation of MCP-like proteins in Rhodobacter sphaeroides. Mol Microbiol 31: 885-892.
25. Hiraga, S., Niki, H., Ogura, T., Ichinose, C., Mori, H., Ezaki, B., and Jaffe, A. (1989) Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells. J Bacteriol 171: 1496-1505.
26. Hiraga, S., Niki, H., Imamura, R., Ogura, T., Yamanaka, K., Feng, J., et al. (1991) Mutants defective in chromosome partitioning in E. coli. Res Microbiol 142: 189-194.
27. Hu, Z., and Lutkenhaus, J. (1999) Topological regulation of cell division in Escherichia coli involves rapid pole to pole oscillation of the division inhibitor MinC under the control of MinD and MinE. Mol Microbiol 34: 82-90.
28. Kirby, J.R., Niewold, T.B., Maloy, S., and Ordal, G.W. (2000) CheB is required for behavioural responses to negative stimuli during chemotaxis in Bacillus subtilis. Mol Microbiol 35: 44-57.
29. Koppelman, C.M., Den Blaauwen, T., Duursma, M.C., Heeren, R.M., and Nanninga, N. (2001) Escherichia coli minicell membranes are enriched in cardiolipin. J Bacteriol 183: 6144-6147.
30. Kubori, T., Matsushima, Y., Nakamura, D., Uralil, J., Lara-Tejero, M., Sukhan, A., et al. (1998) Supramolecular structure of the Salmonella typhimurium type III protein secretion system. Science 280: 602-605.
31. Lawley, T.D., Gordon, G.S., Wright, A., and Taylor, D.E. (2002) Bacterial conjugative transfer: visualization of successful mating pairs and plasmid establishment in live Escherichia coli. Mol Microbiol 44: 947-956.
32. Link, A.J., Robison, K., and Church, G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18: 1259-1313.
33. Maddock, J.R., and Shapiro, L. (1993) Polar location of the chemoreceptor complex in the Escherichia coli cell. Science 259: 1717-1723.
34. Meagher, R.B., Tait, R.C., Betlach, M., and Boyer, H.W. (1977) Protein expression in E. coli minicells by recombinant plasmids. Cell 10: 521-536.
35. Mileykovskaya, E., and Dowhan, W. (2000) Visualization of phospholipid domains in Escherichia coli by using the cardiolipin-specific fluorescent dye 10-N-nonyl acridine orange. J Bacteriol 182: 1172-1175.
36. Miller, J.H. (1972) Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
37. Molloy, M.P. (2000) Two-dimensional electrophoresis of membrane proteins using immobilized pH gradients. Anal Biochem 280: 1-10.
38. Molloy, M.P., Herbert, B.R., Slade, M.B., Rabilloud, T., Nouwens, A.S., Williams, K.L., and Gooley, A.A. (2000) Proteomic analysis of the Escherichia coli outer membrane. Eur J Biochem 267: 2871-2881.
39. Molloy, M.P., Phadke, N.D., Chen, H., Tyldesley, R., Garfin, D.E., Maddock, J.R., and Andrews, P.C. (2002) Profiling the alkaline membrane proteome of Caulobacter crescentus with two-dimensional electrophoresis and mass spectrometry. Proteomics 2: 899-910.
40. Pappin, D.J.C., Hojrup, P., and Bleasby, A.J. (1993) Rapid identification of proteins by peptide-mass fingerprinting. Curr Biol 3: 327-332.
41. Phadke, N.D., Molloy, M.P., Steinhoff, S.A., Ulintz, P.J., Andrews, P.C., and Maddock, J.R. (2001) Analysis of the outer membrane proteome of Caulobacter crescentus by two-dimensional electrophoresis and mass spectrometry. Proteomics 1: 705-720.
42. Pilsl, H., Smajs, D., and Braun, V. (1999) Characterization of colicin S4 and its receptor, OmpW, a minor protein of the Escherichia coli outer membrane. J Bacteriol 181: 3578-3581.
43. Raskin, D.M., and de Boer, P.A. (1997) The MinE ring: an FtsZ-independent cell structure required for selection of the correct division site in E. coli. Cell 91: 685-694.
44. Riede, I., Eschbach, M.L., and Henning, U. (1984) DNA sequence heterogeneity in the genes of T-even type Escherichia coli phages encoding the receptor recognizing protein of the long tail fibers. Mol Gen Genet 195: 144-152.
45. Rosqvist, R., Magnusson, K.E., and Wolf-Watz, H. (1994) Target cell contact triggers expression and polarized transfer of Yersinia YopE cytotoxin into mammalian cells. EMBO J 13: 964-972.
46. Rudner, D.Z., Pan, Q., and Losick, R.M. (2002) A sporulation membrane protein tethers the pro-sigmaK processing enzyme to its inhibitor and dictates its subcellular localization. Proc Natl Acad Sci USA 99: 8701-8706.
47. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
48. Shapiro, L., McAdams, H.H., and Losick, R. (2002) Generating and exploiting polarity in bacteria. Science 298: 1942-1946.
49. Shiomi, D., Zhulin, I.B., Homma, M., and Kawagishi, I. (2002) Dual recognition of the bacterial chemoreceptor by chemotaxis-specific domains of the CheR methyltransferase. J Biol Chem 277: 42325-42333.
50. Sourjik, V., and Berg, H.C. (2000) Localization of components of the chemotaxis machinery of Escherichia coli using fluorescent protein fusions. Mol Microbiol 37: 740-751.
51. Steinhauer, J., Agha, R., Pham, T., Varga, A.W., and Goldberg, M.B. (1999) The unipolar Shigella surface protein IcsA is targeted directly to the bacterial old pole: IcsP cleavage of IcsA occurs over the entire bacterial surface. Mol Microbiol 32: 367-377.
52. Urbanus, M.L., Froderberg, L., Drew, D., Bjork, P., de Gier, J.W., Brunner, J., et al. (2002) Targeting, insertion, and localization of Escherichia coli YidC. J Biol Chem 12: 277 (15): 12718-12723.
53. Wilson, G., and Fox, C.F. (1971) Membrane assembly in Escherichia coli. II. Segregation of preformed and newly formed membrane proteins into cells and minicells. Biochem Biophys Res Commun 44: 503-509.
54. Yi, L., Jiang, F., Chen, M., Cain, B., Bolhuis, A., and Dalbey, R.E. (2003) YidC is strictly required for membrane insertion of subunits a and c of the F(1)F(0) ATP synthase and SecE of the SecYEG translocase. Biochemistry 42: 10537-10544.
55. Zhang, L.H., Fath, M.J., Mahanty, H.K., Tai, P.C., and Kolter, R. (1995) Genetic analysis of the colicin V secretion pathway. Genetics 141: 25-32.