Proteomic analysis of the photosystem I light-harvesting antenna in tomato (Lycopersicon esculentum)

Biochemistry

Volumn 43, Issue 28, 2004, Pages 9214-9224

  Storf, Stefanie ^b   Stauber, Einar J ^c   Hippler, Michael ^a   Schmidy, Volkmar H R ^b  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

^b JOHANNES GUTENBERG UNIVERSITY   (Germany)

^c FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CRYSTAL STRUCTURE; ELECTROPHORESIS; GENES; MASS SPECTROMETRY;

GEL ELECTROPHORESIS; LIGHT-HARVESTING ANTENNA;

PROTEINS;

PROTEIN LHCA1; PROTEIN LHCA2; PROTEIN LHCA3; PROTEIN LHCA4; PROTEIN LHCA5; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; CRYSTAL STRUCTURE; GEL ELECTROPHORESIS; IMMUNOBLOTTING; IMMUNODETECTION; LIGHT HARVESTING SYSTEM; MASS SPECTROMETRY; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; PEA; PHOTOSYSTEM II; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; TANDEM MASS SPECTROMETRY; TOMATO; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; ELECTROPHORESIS; IMMUNOBLOTTING; LIGHT-HARVESTING PROTEIN COMPLEXES; LYCOPERSICON ESCULENTUM; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PHOTOSYSTEM I PROTEIN COMPLEX; PROTEIN ISOFORMS; PROTEOMICS; SEQUENCE ANALYSIS, PROTEIN;

EMBRYOPHYTA; LYCOPERSICON; LYCOPERSICON ESCULENTUM; PISUM SATIVUM;

EID: 3142770544     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0498196     Document Type: Article

References (54)

1. Haldrup, A., Jensen, P. E., Lunde, C., and Scheller, H. V. (2001) Balance of power: a view of the mechanism of photosynthetic state transitions, Trends Plant Sci. 6, 301-305.
2. Demmig-Adams, B. (1990) Carotenoid and photoprotection in plants: A role for the xanthophyll zeaxanthin, Biochim. Biophys. Acta 1020, 1-24.
3. Yamamoto, H., and Bassi, R. (1996) Carotenoids: Localization and Function, in Oxygenic Photosynthesis: The Light Reactions (Ort, D. R., and Yocum, C. F., Eds.) pp 507-521, Kluwer Academic Publishers, Dordrecht, The Netherlands.
4. Peter, G. F., and Thornber, J. P. (1991) Biochemical composition and organization of higher plant photosystem II light-harvesting pigment-proteins, J. Biol. Chem. 266, 16745-16754.
5. Bassi, R., Pineau, B., Dainese, P., and Marquardt, J. (1993) Carotenoid-binding proteins of photosystem II, Eur. J. Biochem. 21, 297-303.
6. Haworth, P., Watson, J. L., and Arntzen, C. J. (1983) The detection, isolation, and characterization of a light-harvesting complex which is specifically associated with photosystem I, Biochim. Biophys. Acta 724, 151-158.
7. Lam, E., Ortiz, W., and Malkin, R. (1984) Chlorophyll a/b proteins of photosystem I, FEBS Lett. 168, 10-14.
8. Bassi, R., Machold, O., and Simpson, D. (1985) Chlorophyll-proteins of two photosystem I preparations from maize, Carlsberg Res. Commun. 50, 145-162.
9. Jansson, S., Andersen, B., and Scheller, H. V. (1996) Nearest-neighbor analysis of higher-plant photosystem I holocomplex, Plant Physiol. 112, 409-420.
10. Schmid, V. H. R., Cammarata, K. V., Bruns, B. U., and Schmidt, G. W. (1997) In vitro reconstitution of the photosystem I light harvesting complex LHCI-730: heterodimerization is required for antenna pigment organization, Proc. Natl. Acad. Sci. U.S.A. 94, 7667-7672.
11. Croce, R., Morosinotto, T., Castelletti, S., Breton, J., and Bassi, R. (2002) The Lhca antenna complexes of higher plant photosystem I, Biochim. Biophys. Acta 1556, 29-40.
12. Ikeuchi, M., Hirano, A., and Inoue, Y. (1991) Correspondence of apoproteins of light-harvesting chlorophyll a/b complexes associated with photosystem I to cab genes: evidence for a novel type IV apoprotein, Plant Cell Physiol. 32, 103-112.
13. Knoetzel, J., Svendsen, I., and Simpson, D. J. (1992) Identification of the photosystem-I antenna polypeptides in barley: isolation of 3 pigment-binding antenna complexes, Eur. J. Biochem. 206, 209-215.
14. Tjus, S. E., Roobol-Boza, M., Palsson, L. O., and Andersson, B. (1995) Rapid isolation of photosystem I chlorophyll-binding proteins by anion exchange perfusion chromatography, Photosynth. Res. 45, 41-49.
15. Schmid, V. H. R., Potthast, S., Wiener, M., Bergauer, V., Paulsen, H., and Storf, S. (2002) Pigment Binding of Photosystem I Light-harvesting Proteins, J. Biol. Chem. 277, 37307-37314.
16. Castelletti, S., Morosinotto, T., Robert, B., Caffarri, S., Bassi, R., and Croce, R. (2003) Recombinant Lhca2 and Lhca3 Subunits of the Photosystem I Antenna System, Biochemistry 42, 4226-4234.
17. Boekema, E. J., Wynn, R. M., and Malkin, R. (1990) The structure of spinach photosystem I studied by electron microscopy, Biochim. Biophys. Acta 1017, 49-56.
18. Boekema, E. J., Jensen, P. E., Schlodder, E., van Breemen, J. F. L., van Roon, H., Scheller, H. V., and Dekker, J. P. (2001) Green plant photosystem I binds light-harvesting complex I on one side of the complex, Biochemistry 40, 1029-1036.
19. Ben-Shem, A., Frolow, F., and Nelson, N. (2003) Crystal structure of plant photosystem I, Nature 426, 630-635.
20. Pichersky, E., and Jansson, S. (1996) The light-harvesting chlorophyll a/b-binding polypeptides and their genes in angiosperm and gymnosperm species, in Oxygenic Photosynthesis: The Light Reactions (Ort, D. R., and Yocum, C. F., Eds.) pp 507-521, Kluwer Academic Publishers, Dordrecht, The Netherlands.
21. Jansson, S. (1999) A guide to the Lhc genes and their relatives in Arabidopsis, Trends Plant Sci. 4, 236-240.
22. Stauber, E. J., Fink, A., Markert, C., Kruse, O., Johanningmeier, U., and Hippler, M. (2003) Proteomics of Chlamydomonas reinhardtii light-harvesting proteins, Eukaryotic Cell 2, 978-994.
23. Hoffman, N. E., Pichersky, E., Malik, V. S., Castresana, C., Ko, K., Darr, S. C., and Cashmore, A. R. (1987) The nucleotide sequence of a tomato cDNA clone encoding a photosystem I protein with homology to photosystem II chlorophyll a/b-binding polypeptides, Proc. Natl. Acad. Sci. U.S.A. 84, 8844-8848.
24. Pichersky, E., Hoffman, N. E., Bernatzky, R., Piechulla, B., Tanksley, S. D., and Cashmore, A. R. (1987) Molecular characterization and genetic mapping of DNA sequences encoding type I chlorophyll a/b-binding polypeptide of photosystem I in Lycopersicon esculentum (tomato), Plant Mol. Biol. 9, 205-216.
25. Pichersky, E., Tanksley, S. D., Piechulla, B., Stayton, M. M., and Dunsmuir, P. (1988) Nucleotide sequence and chromosomal location of cab-7, the tomato gene encoding the type II chlorophyll a/b-binding polypeptide of photosystem I, Plant Mol. Biol. 11, 69-71.
26. Pichersky, E., Brock, T. G., Nguyen, D., Hoffman, N. E., Piechulla, B., Tanksley, S. D., and Green, B. R. (1989) A new member of the cab gene family: structure, expression and chromosomal location of cab-8, the tomato gene encoding the type III chlorophyll a/b-binding polypeptide of photosystem I, Plant Mol. Biol. 12, 257-270.
27. Schwartz, E., Shen, D., Aebersold, R., McGrath, J. M., Pichersky, E., and Green, B. R. (1991) Nucleotide sequence and chromosomal location of cab 11 and cab 12, the genes for the fourth polypeptide of the photosystem I light-harvesting antenna (LHCI), FEBS Lett. 280, 229-234.
28. Zolla, L., Rinalducci, S., Timperio, A. M., and Huber, C. G. (2002) Proteomics of Light-Harvesting Proteins in Different Plant Species. Analysis and Comparison by Liquid Chromatography-Electrospray Ionization Mass Spectrometry. Photosystem I, Plant Physiol. 130, 1938-1950.
29. Hippler, M., Klein, J., Fink, A., Allinger, T., and Hoerth, P. (2001) Towards functional proteomics of membrane protein complexes: analysis of thylakoid membranes from Chlamydomonas reinhardtii, Plant J. 28, 595-606.
30. Paulsen, H., and Schmid, V. H. R. (2002) Analysis and Reconstitution of Chlorophyll-Proteins, in Heme, Chlorophyll and Bilins: Methods and Protocols (Smith, A. G., and Witty, M., Eds.) pp 235-253, Humana Press, Totowa, NJ.
31. Porra, R. J., Thompson, W. A., and Kriedemann, P. E. (1989) Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy, Biochim. Biophys. Acta 975, 384-394.
32. Laemmli, U. K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature 227, 680-685.
33. Wessel, D., and Fluegge, U. I. (1984) A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids, Anal. Biochem. 138, 141-143.
34. Sigrist, M., and Staehelin, L. A. (1994) Appearance of type 1, 2, and 3 light-harvesting complex II and light-harvesting complex I proteins during light-induced greening of barley (Hordeum vulgare) etioplasts, Plant Physiol. 104, 135-145.
35. Mortz, E., Vorm, O., Mann, M., and Roepstorff, P. (1994) Identification of proteins in polyacrylamide gels by mass spectrometric peptide mapping combined with database search Biol. Mass Spectrom. 23, 249-261.
36. Knoetzel, J., Meyer, D. U., and Grimme, L. H. (1998) Phosphorylated Photosystem I antenna proteins in Barley, in Photosynthesis: from Light to Biosphere (Mathis, P., Ed.) Vol. 1, pp 131-134, Kluwer Academic Publishers, Dordrecht, The Netherlands.
37. Huber, C. G., Timperio, A.-M., and Zolla, L. (2001) Isoforms of Photosystem II Antenna Proteins in Different Plant Species Revealed by Liquid Chromatography-Electrospray Ionization Mass Spectrometry, J. Biol. Chem. 276, 45755-45761.
38. Gómez, S. M., Nishio, J. N., Faull, K. F., and Whitelegge, J. P. (2002) The Chloroplast Grana Proteome Defined by Intact Mass Measurements from Liquid Chromatography Mass Spectrometry, Mol. Cell. Proteomics 1, 46-59.
39. Obokata, J., Mikami, K., Hayashida, N., Nakamura, M., and Sugiura, M. (1993) Molecular Heterogeneity of Photosystem I, Plant Physiol. 102, 1259-1267.
40. Bennett, J. (1991) Protein phosphorylation in green plant chloroplasts, Annu. Rev. Plant Physiol. Plant Mol. Biol. 42, 281-311.
41. Dunahay, T. G., Schuster, G., and Staehelin, L. A. (1987) Phosphorylation of spinach chlorophyll-protein complexes, FEBS Lett. 215, 25-30.
42. Bassi, R., Giacometti, G. M., and Simpson, D. J. (1988) Changes in the organization of stroma membranes induced by in vivo state 1-state 2 transition, Biochim. Biophys. Acta 935, 152-165.
43. Elich, T. D., Edelman, M., and Mattoo, A. K. (1992) Identification, characterization, and resolution of the in vivo phosphorylated form of the photosystem II reaction center protein, J. Biol. Chem. 267, 3523-3529.
44. Bergantino, E., Sandona, D., Cugini, D., and Bassi, R. (1998) The photosystem II subunit CP29 can be phosphorylated in both C3 and C4 plants as suggested by sequence analysis, Plant Mol. Biol. 36, 11-22.
45. Clark, S. E., Abad, M. S., and Lamppa, G. K. (1989) Mutations at the transit peptide-mature protein junction separate two cleavage events during chloroplast import of the chlorophyll a/b-binding protein, J. Biol. Chem. 264, 17544-17550.
46. Pichersky, E., Hoffman, N. E., Malik, V. S., Bernatzky, R., Szabo, L., and Cashmore, A. R. (1987) The tomato Cab-4 and Cab-5 genes encode a second type of CAB polypeptides localized in photosystem II, Plant Mol. Biol. 9, 109-120.
47. Gómez, S. M., Bil', K. Y., Aguilera, R., Nishio, J. N., Faull, K. F., and Whitelegge, J. P. (2003) Transit peptide cleavage sites of integral thylakoid membrane proteins, Mol. Cell. Proteomics 2, 1068-1085.
48. Schmid, V. H. R., Paulsen, H., and Rupprecht, J. (2002) Identification of N- and C-terminal amino acids of Lhca1 and Lhca4 required for formation of the heterodimeric peripheral photosystem I antenna LHCI-730, Biochemistry 41, 9126-9131.
49. Svensson, P., Andreasson, E., and Albertsson, P.-A. (1991) Heterogeneity among photosystem I, Biochim. Biophys. Acta 1060, 45-50.
50. Jansson, S., Stefansson, H., Nyström, U., Gustafsson, P., and Albertsson, P.-A. (1997) Antenna protein composition of PS I and PS II in thylakoid subdomains, Biochim. Biophys. Acta 1320, 297-309.
51. Bailey, S., Walters, R. G., Jansson, S., and Horton, P. (2001) Acclimation of Arabidopsis thaliana to the light environment: the existence of separate low light and high light responses, Planta 213, 794-801.
52. Bossmann, B., Knoetzel, J., and Jansson, S. (1997) Screening of chlorina mutants of barley (Hordeum vulgare L.) with antibodies against light-harvesting proteins of PSI and PSII: absence of specific antenna proteins, Photosynth. Res. 52, 127-136.
53. Ganeteg, U., Strand, A., Gustafsson, P., and Jansson, S. (2001) The Properties of the Chlorophyll a/b-Binding Proteins Lhca2 and Lhca3 Studied in Vivo Using Antisense Inhibition, Plant Physiol. 127, 150-158.
54. Zhang, H., Goodman, H. M., and Jansson, S. (1997) Antisense inhibition of the Photosystem I Antenna Protein Lhca4 in Arabidopsis thaliana, Plant Physiol. 11, 1525-1531.