Proteomics of Chlamydomonas reinhardtii light-harvesting proteins

Eukaryotic Cell

Volumn 2, Issue 5, 2003, Pages 978-994

  Stauber, Einar J ^a   Fink, Andreas ^a   Markert, Christine ^a   Kruse, Olaf ^b   Johanningmeier, Udo ^c   Hippler, Michael ^a  

^a FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

^b BIELEFELD UNIVERSITY   (Germany)

^c MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEOME;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMISTRY; CHLAMYDOMONAS REINHARDTII; GENE EXPRESSION; GENETICS; LIGHT HARVESTING SYSTEM; MASS SPECTROMETRY; MOLECULAR GENETICS; PHOSPHORYLATION; PHOTOSYSTEM I; PHOTOSYSTEM II; PHYLOGENY; PROTEIN DATABASE; PROTEIN PROCESSING; PROTEOMICS; SEQUENCE HOMOLOGY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; ANIMALS; CHLAMYDOMONAS REINHARDTII; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION; LIGHT-HARVESTING PROTEIN COMPLEXES; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PHOSPHORYLATION; PHOTOSYSTEM I PROTEIN COMPLEX; PHOTOSYSTEM II PROTEIN COMPLEX; PHYLOGENY; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOME; PROTEOMICS; SEQUENCE HOMOLOGY, AMINO ACID;

ALGAE; ANIMALIA; CHLAMYDOMONAS; CHLAMYDOMONAS REINHARDTII; EUKARYOTA;

EID: 0142184945     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.2.5.978-994.2003     Document Type: Article

References (47)

1. Asamizu, E., K. Miura, K. Kucho, Y. Inoue, H. Fukuzawa, K. Ohyama, Y. Nakamura, and S. Tabata. 2000. Generation of expressed sequence tags from low-CO2 and high-CO2 adapted cells of Chlamydomonas reinhardtii. DNA Res. 7:305-307.
2. Asamizu, E., Y. Nakamura, S. Sato, H. Fukuzawa, and S. Tabata. 1999. A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags. DNA Res. 6:369-373.
3. Bassi, R., S. Y. Soen, G. Frank H. Zuber, and J. D. Rochaix. 1992. Characterization of chlorophyll a/b proteins of photosystem I from Chlamydomohas reinhardtii. J. Biol. Chem. 267:25714-25721.
4. Boekema, E. J., P. E. Jensen, E. Schlodder, J. F. van Breemen, H. van Roon, H. V. Scheller, and J. P. Dekker. 2001. Green plant photosystem I binds light-harvesting complex I on one side of the complex. Biochemistry 40: 1029-1036.
5. Clark S. E., M. S. Abad, and G. K. Lamppa. 1989. Mutations at the transit peptide-mature protein junction separate two cleavage events during chloroplast import of the chlorophyll a/b-binding protein. J. Biol. Chem. 264: 17544-17550.
6. Clark S. E., J. E. Oblong, and G. K. Lamppa. 1990. Loss of efficient import and thylakoid insertion due to N- and C-terminal deletions in the light-harvesting chlorophyll a/b binding protein. Plant Cell 2:173-184.
7. Clark, S. E., and G. K. Lamppa. 1991. Determinants for cleavage of the chlorophyll a/b binding protein precursor: a requirement for a basic residue that is not universal for chloroplast imported proteins J. Cell Biol. 114:681-688.
8. Cline, K. 1988. Membrane insertion, proteolytic processing assembly into LHCII and localisation to appressed membranes occur in chloroplast lysates. Plant Physiol. 86:1120-1126.
9. Corradini, D., C. G. Huber, A. M. Timperio, and L. Zolla. 2000. Resolution and identification of the protein components of the photosystem II antenna system of higher plants by reversed-phase liquid chromatography with electrospray-mass spectrometric detection. J. Chromatogr. A 886:111-121.
10. Depege, N., S. Bellafiore, and J. D. Rochaix. 2003. Role of chloroplast protein kinase Stt7 in LHCII phosphorylation and state transition in Chlamydomonas. Science 299:1572-1575.
11. Elrad, D., K. K. Niyogi, and A. R. Grossman. 2002. A major light-harvesting polypeptide of photosystem II functions in thermal dissipation. Plant Cell 14:1801-1816.
12. Eng, J., A. L. McCormack and J. R. Yates. 1994. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc Mass Spectrom. 5:976-989.
13. Fernandez, E., R. Schnell, L. P. Ranum, S. C. Hussey, C. D. Silflow, and P. A. Lefebvre. 1989. Isolation and characterization of the nitrate reductase structural gene of Chlamydomonas reinhardtii Proc. Natl. Acad. Sci. USA 86: 6449-6453.
14. Fleischmann, M. M., S. Ravanel, R. Delosme, J. Olive, F. Zito, F. A. Wollman, and J. D. Rochaix. 1999. Isolation and characterization of photoautotrophic mutants of Chlamydomonas reinhardtii deficient in state transition. J. Biol. Chem. 274:30987-30994.
15. Germano, M., A. E. Yakushevska, W. Keegstra, H. J. van Gorkom, J. P. Dekker, and E. J. Boekema. 2002. Supramolecular organization of photosystem I and light-harvesting complex I in Chlamydomonas reinhardtii. FEBS Lett. 525:121-125.
16. Gomez, S. M., J. N. Nishio, K. F. Faull, and J. P. Whitelegge. 2002. The chloroplast grana proteome defined by intact mass measurements from liquid chromatography mass spectrometry. Mol. Cell. Proteomics 1:46-59.
17. Harris, E. H. 1989. The Chlamydomonas sourcebook. A comprehensive guide to biology and laboratory use. Academic Press, Inc, San Diego, Calif.
18. Hippler, M., F. Drepper, J. Farah, and J. D. Rochaix. 1997. Fast electron transfer from cytochrome c6 and plastocyanin to photosystem I of Chlamydomonas reinhardtii requires PsaF. Biochemistry 36:6343-6349.
19. Hippler, M., K. Biehler, A. Krieger-Liszkay, J. van Dillewjin, and J. D. Rochaix. 2000 Limitation in electron transfer in photosystem I donor side mutants of Chlamydomonas reinhardfii. Lethal photo-oxidative damage in high light is overcome in a suppressor strain deficient in the assembly of the light harvesting complex. J. Biol. Chem. 275:5852-5859.
20. Hippler, M., J. Klein, A. Fink, T. Allinger, and P. Hoerth. 2001. Towards functional proteomics of membrane protein complexes: analysis of thylakoid membranes from Chlamydomonas reinhardtii. Plant J. 28:595-606.
21. Hippler, M., B. Rimbault, and Y. Takahashi. 2002. Photosynthetic complex assembly in Chlamydomonas reinhardtii. Protist 153:197-220.
22. Huber, C. G., A. M. Timperio, and L. Zolla. 2001. Isoforms of photosystem II antenna proteins in different plant species revealed by liquid chromatography-electrospray ionization mass spectrometry. J. Biol. Chem. 276:45755-45761.
23. Imbault, P., C. Wittemer, U. Johanningmeier, J. D. Jacobs, and S. H. Howell. 1988. Structure of the Chlamydomonas reinhardtii cabII-1 gene encoding a chlorophyll-a/b-binding protein. Gene 73:397-407.
24. Jansson, S. 1999. A guide to the Lhc genes and their relatives in Arabidopsis. Trends Plant Sci. 4:236-240.
25. Jasper, F., B. Quednau, M. Kortenjan, and U. Johanningmeier. 1991. Control of cab gene expression in synchronized Chlamydomonas reinhardtii cells. J. Photochem. Photobiol. 11:139-150.
26. Kindle, K., R. Schnell, E. Fernandez, and P. Lefebvre. 1989. Stable nuclear transformation of Chlamydomonas reinhardtii. J. Cell Biol. 109:2589-2601.
27. Kohorn, B. D., and D. Yakir. 1990 Movement of newly imported light-harvesting chlororophyll-binding protein from unstacked to stacked thylakoid membranes is not affected by light treatment or absence of amino-terminal threonines. J. Biol. Chem. 265:2118-2123.
28. Kuhlbrandt, W., D. N. Wang, and Y. Fujiyoshi. 1994. Atomic model of plant light-harvesting complex by electron crystallography. Nature 367:614-621.
29. Lamppa, G. K., and M. S. Abad. 1987. Processing of a wheat light-harvesting chlorophyll a/b protein precursor by a soluble enzyme from higher plant chloroplasts. J. Cell Biol. 105:2641-2648.
30. Mayfield, S. P., G. Schirmer-Rahire, H. Frank, H. Zuber, H., and J. D. Roehaix. 1989. Analysis of the genes of the OEE1 and OEE3 proteins of the photosystem II complex from Chlamydomonas reinhardtii. Plant Mol. Biol. 12:683-593.
31. Michel, H., P. R. Griffin, J. Shabanowitz, D. F. Hunt, and J. Bennett. 1991. Tandem mass spectrometry identifies sites of three post-translational modifications of spinach light-harvesting chlorophyll protein II. Proteolytic cleavage, acetylation, and phosphorylation. J. Biol. Chem. 266:17584-17591.
32. Minagawa, J., K. C. Han, N. Dohmae, K. Takio, and Y. Inoue. 2001. Molecular characterization and gene expression of lhcb5 gene encoding CP26 in the light-harvesting complex II of Chlamydomonas reinhardtii. Plant Mol. Biol. 46:277-287.
33. Moseley, J. L., T. Allinger, S. Herzog, P. Hoerth, E. Wehinger, S. Merchant, and M. Hippler. 2002. Adaptation to Fe-deficiency requires remodeling of the photosynthetic apparatus. EMBO J. 21:6709-6720.
34. Peter, G. F., and J. P. Thornber. 1991. Biochemical composition and organization of higher plant photosystem II light-harvesting pigment proteins. J. Biol. Chem. 266:16745-16754.
35. Pichersky, E., N. E. Hoffman, V. S. Malik, R. Bernatzky, L. Szabo, and A. R. Cashmore. 1987. The tomato Cab-4 and Cab-5 genes encode a second type of CAB polypeptides localized in photosystem II. Plant Mol. Biol. 9:109-120.
36. Porra, R. J., W. A. Thompson, and P. E. Kriedemann. 1989. Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochim. Biophys. Acta 975:384-394.
37. Richter, S., and G. K. Lamppa. 1998. A chloroplast processing enzyme functions as the general stromal processing peptidase. Proc Natl. Acad. Sci. USA 95:7463-7468.
38. Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
39. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
40. Santoni, V., M. Molloy, and T. Rabilloud. 2000. Membrane proteins and proteomics: un amour impossible? Electrophoresis 21:1054-1070.
41. Strauss, C., Mussgang, J. H., and O. Kruse. 2001. Ligation-mediated suppression-PCR as a powerful tool to analyse nuclear gene sequences in the green alga Chlamydomonas reinhardtii. Photosynth. Res. 70:311-320.
42. Teramoto, H., T. Ono, and J. Minagawa. 2001. Identification of Lhcb gene family encoding the light-harvesting chlorophyll-a/b proteins of photosystem II in Chlamydomonas reinhardtii. Plant Cell Physiol. 42:849-856.
43. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
44. van Wijk, K. J. 2001. Challenges and prospects of plant proteomics. Plant Physiol. 126:501-508.
45. Vener, A. V., A. Harms, M. R. Sussman, and R. D. Vierstra. 2001. Mass spectrometric resolution of reversible protein phosphorylation in photosynthetic membranes of Arabidopsis thaliana. J. Biol Chem. 276:6959-6966.
46. Wollman, F. A., and P. Delepelaire. 1984. Correlation between changes in light energy distribution and changes in thylakoid membrane polypeptide phosphorylation in Chlamydomonas reinhardtii. J. Cell Biol. 98:1-7.
47. Zolla, L., S. Rinalducci, A. M. Timperio, and C. G. Huber. 2002. Proteomics of light-harvesting proteins in different plant species. Analysis and comparison by liquid chromatography-electrospray ionization mass spectrometry Photosystem I. Plant Physiol. 130:1938-1950.